Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35599 * 116.99985 * 2 1 4 4 C 1.39148 * 119.88572 * 0.02562 * 3 2 1 5 5 C 1.36413 * 120.43954 * 179.97438 * 4 3 2 6 6 C 1.40902 * 120.19007 * 0.02617 * 5 4 3 7 7 C 1.41247 * 120.11839 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99852 * 24.49358 * 7 6 5 9 9 C 1.39863 * 119.99717 * 204.48308 * 7 6 5 10 10 N 1.30894 * 120.00498 * 17.82451 * 9 7 6 11 11 Si 1.86805 * 119.99719 * 197.82255 * 9 7 6 12 12 H 1.48501 * 109.47248 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47396 * 120.00370 * 11 9 7 14 14 H 1.48507 * 109.47053 * 240.00244 * 11 9 7 15 15 C 1.40613 * 119.76286 * 359.72631 * 6 5 4 16 16 C 1.38597 * 119.57125 * 0.50248 * 15 6 5 17 17 C 1.48335 * 120.10015 * 179.79780 * 16 15 6 18 18 C 1.39386 * 120.12471 * 129.69610 * 17 16 15 19 19 C 1.37994 * 119.87381 * 179.74806 * 18 17 16 20 20 C 1.38341 * 120.12391 * 0.55093 * 19 18 17 21 21 C 1.38310 * 120.24770 * 359.44776 * 20 19 18 22 22 C 1.50696 * 119.93698 * 180.25312 * 21 20 19 23 23 C 1.47203 * 115.55117 * 214.41667 * 22 21 20 24 24 N 7.50093 * 159.33151 * 285.30397 * 2 1 3 25 25 C 1.53007 * 117.50013 * 68.74795 * 22 21 20 26 26 C 1.53004 * 117.50140 * 0.08895 * 22 21 20 27 27 C 1.38034 * 120.12536 * 0.27543 * 21 20 19 28 28 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46808 * 300.00093 * 1 2 3 30 30 H 1.08994 * 109.47008 * 60.00179 * 1 2 3 31 31 H 1.08001 * 119.77769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.90246 * 180.02562 * 5 4 3 33 33 H 0.96997 * 119.99841 * 179.97438 * 10 9 7 34 34 H 1.08006 * 120.21961 * 180.29622 * 15 6 5 35 35 H 1.08006 * 120.05990 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.93346 * 180.27340 * 19 18 17 37 37 H 1.07998 * 119.87782 * 179.72384 * 20 19 18 38 38 H 1.09003 * 117.49870 * 359.97438 * 25 22 21 39 39 H 1.09002 * 117.50232 * 145.01984 * 25 22 21 40 40 H 1.08999 * 117.50079 * 214.98211 * 26 22 21 41 41 H 1.09003 * 117.49319 * 359.97438 * 26 22 21 42 42 H 1.07994 * 120.06378 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0005 7 6 3.9255 4.9525 0.0005 8 1 3.4029 5.8143 0.3887 9 6 5.2235 5.0894 -0.5020 10 7 5.7267 4.1620 -1.2766 11 14 6.2392 6.5958 -0.0675 12 1 5.4472 7.4889 0.8159 13 1 7.4763 6.1726 0.6365 14 1 6.6012 7.3239 -1.3102 15 6 4.0742 2.5146 0.0053 16 6 3.4467 1.2789 -0.0002 17 6 4.2542 0.0345 0.0002 18 6 3.9853 -0.9736 0.9244 19 6 4.7363 -2.1313 0.9168 20 6 5.7618 -2.2875 0.0015 21 6 6.0331 -1.2905 -0.9178 22 6 7.1482 -1.4704 -1.9153 23 6 7.8812 -0.2459 -2.2760 24 7 8.4472 0.6988 -2.5536 25 6 6.9569 -2.5263 -3.0060 26 6 7.9408 -2.7780 -1.8607 27 6 5.2847 -0.1306 -0.9231 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2063 2.3108 0.0014 32 1 1.2935 4.4941 0.0019 33 1 6.6268 4.2572 -1.6254 34 1 5.1525 2.5766 0.0097 35 1 3.1882 -0.8504 1.6428 36 1 4.5259 -2.9149 1.6296 37 1 6.3500 -3.1933 0.0020 38 1 6.0246 -3.0911 -3.0018 39 1 7.3741 -2.3144 -3.9905 40 1 9.0049 -2.7316 -2.0921 41 1 7.6559 -3.5079 -1.1029 42 1 5.4971 0.6471 -1.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244071885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = 60.748916 kcal Electronic energy + Delta-G solvation = -25599.089335 eV Core-core repulsion = 22088.968232 eV Total energy + Delta-G solvation = -3510.121103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83393 -38.83129 -37.26203 -36.30320 -35.40126 -33.39540 -31.80669 -30.54700 -29.12702 -28.22754 -26.86763 -24.74909 -24.66031 -23.00209 -22.27504 -21.69889 -20.62448 -19.77482 -17.87257 -16.94539 -16.81521 -16.31378 -15.34145 -15.10014 -14.87484 -14.77242 -14.51238 -14.17234 -13.74719 -13.38236 -13.36358 -13.09107 -12.85016 -12.74253 -12.48218 -12.28749 -12.09125 -12.03412 -11.69437 -11.58004 -11.27840 -11.12593 -11.07839 -10.94664 -10.70791 -10.64841 -10.54632 -10.38166 -10.03713 -9.83223 -9.45306 -9.05638 -8.51639 -8.29878 -7.41224 -7.02155 -6.71383 -4.27891 1.60945 1.78696 2.66636 2.75953 2.85313 2.94577 3.10577 3.14971 3.18360 3.82677 3.84816 3.95797 4.20412 4.29893 4.39367 4.61815 4.78696 4.93432 5.18365 5.36614 5.44382 5.46369 5.57823 5.60312 5.62779 5.68514 5.72660 5.84599 5.88456 5.94167 5.99961 6.08846 6.28548 6.45517 6.52292 6.85652 6.87148 6.90389 7.01731 7.10000 7.22096 7.32099 7.43903 7.48336 7.71989 7.74564 7.93948 8.13812 8.40106 8.58990 8.87173 8.91847 10.21005 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.005607 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.493253 B = 4992.315413 C = 7582.448505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.011 3.989 4 C -0.169 4.169 5 C -0.187 4.187 6 C 0.086 3.914 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.793 5.793 11 Si 0.904 3.096 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.275 1.275 15 C -0.114 4.114 16 C -0.070 4.070 17 C 0.003 3.997 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.058 4.058 22 C -0.001 4.001 23 C 0.238 3.762 24 N -0.415 5.415 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.094 4.094 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.281 0.719 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -14.598 0.613 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.239 6.239 3 C -0.032 4.032 4 C -0.188 4.188 5 C -0.207 4.207 6 C 0.084 3.916 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.419 5.419 11 Si 0.728 3.272 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.200 1.200 15 C -0.134 4.134 16 C -0.071 4.071 17 C 0.003 3.997 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.059 4.059 22 C -0.004 4.004 23 C -0.080 4.080 24 N -0.089 5.089 25 C -0.177 4.177 26 C -0.185 4.185 27 C -0.112 4.112 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.839 -13.361 0.041 13.387 hybrid contribution -0.098 0.759 0.169 0.784 sum 0.741 -12.602 0.210 12.626 Atomic orbital electron populations 1.22717 0.81153 1.01724 1.00292 1.85867 1.18880 1.28233 1.90918 1.18477 0.90667 0.83070 1.11017 1.20352 0.97427 0.92849 1.08158 1.20631 0.94828 0.95159 1.10108 1.17500 0.90568 0.93324 0.90213 1.19460 0.98427 0.94945 1.36389 0.90432 1.25854 0.97969 0.97704 0.92662 1.69790 1.16303 1.33437 1.22339 0.86331 0.79929 0.81631 0.79291 1.18429 1.19728 1.20033 1.21341 0.99956 0.89253 1.02811 1.17889 0.88836 0.92212 1.08151 1.18836 0.93649 0.93588 0.93600 1.21257 0.98813 0.92847 0.98316 1.20915 0.96319 0.97693 0.99161 1.20769 0.98978 0.98643 0.96105 1.18429 0.95407 0.95855 0.96216 1.16790 0.97681 0.83863 1.02083 1.27510 0.93467 0.93485 0.93490 1.81259 1.09802 1.09294 1.08547 1.23267 1.02078 0.98507 0.93885 1.23286 0.98151 0.95479 1.01624 1.21152 0.94788 0.96523 0.98747 0.90018 0.93977 0.93978 0.88407 0.88599 0.90779 0.85356 0.86044 0.86374 0.86243 0.86658 0.87717 0.87736 0.86532 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 16 2 O -0.32 -6.29 8.82 -18.49 -0.16 -6.46 16 3 C 0.01 0.25 6.63 -38.44 -0.25 0.00 16 4 C -0.17 -3.71 8.95 -39.90 -0.36 -4.07 16 5 C -0.19 -4.51 9.72 -39.23 -0.38 -4.89 16 6 C 0.09 2.27 5.57 -106.85 -0.60 1.68 16 7 C -0.46 -12.24 9.04 -37.83 -0.34 -12.58 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 10 N -0.79 -21.01 10.96 55.54 0.61 -20.40 16 11 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 16 12 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 15 C -0.11 -2.94 8.14 -38.55 -0.31 -3.26 16 16 C -0.07 -1.64 5.48 -104.80 -0.57 -2.21 16 17 C 0.00 0.07 5.27 -104.90 -0.55 -0.49 16 18 C -0.09 -1.64 8.78 -39.24 -0.34 -1.98 16 19 C -0.12 -1.72 10.03 -39.63 -0.40 -2.12 16 20 C -0.13 -1.66 9.39 -39.52 -0.37 -2.03 16 21 C -0.06 -0.88 5.43 -104.67 -0.57 -1.45 16 22 C 0.00 -0.01 2.43 -158.44 -0.39 -0.39 16 23 C 0.24 3.91 14.08 -20.77 -0.29 3.61 16 24 N -0.41 -7.94 18.54 42.14 0.78 -7.16 16 25 C -0.14 -1.29 9.91 -26.69 -0.26 -1.55 16 26 C -0.15 -1.26 9.55 -26.69 -0.25 -1.52 16 27 C -0.09 -1.81 8.78 -39.25 -0.34 -2.15 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.10 1.85 6.26 -52.49 -0.33 1.52 16 32 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 34 H 0.13 3.48 6.15 -52.48 -0.32 3.16 16 35 H 0.12 2.09 7.69 -52.48 -0.40 1.69 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.13 5.91 -52.49 -0.31 0.82 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.12 0.78 6.07 -51.93 -0.32 0.47 16 42 H 0.12 2.69 7.45 -52.49 -0.39 2.30 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -30.06 361.04 -9.01 -39.06 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.95 Total: 7.26 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -5.69 Total: -32.02 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: 1.39 Total: -27.56 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.16 Total: -6.46 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.06 -9.01 -39.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244071885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.810 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds