Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35599 * 116.99985 * 2 1 4 4 C 1.39148 * 119.88572 * 0.02562 * 3 2 1 5 5 C 1.36413 * 120.43954 * 179.97438 * 4 3 2 6 6 C 1.40902 * 120.19007 * 0.02617 * 5 4 3 7 7 C 1.41247 * 120.11839 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99852 * 24.49358 * 7 6 5 9 9 C 1.39863 * 119.99717 * 204.48308 * 7 6 5 10 10 N 1.30894 * 120.00498 * 17.82451 * 9 7 6 11 11 Si 1.86805 * 119.99719 * 197.82255 * 9 7 6 12 12 H 1.48501 * 109.47248 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47396 * 120.00370 * 11 9 7 14 14 H 1.48507 * 109.47053 * 240.00244 * 11 9 7 15 15 C 1.40613 * 119.76286 * 359.72631 * 6 5 4 16 16 C 1.38597 * 119.57125 * 0.50248 * 15 6 5 17 17 C 1.48335 * 120.10015 * 179.79780 * 16 15 6 18 18 C 1.39386 * 120.12471 * 129.69610 * 17 16 15 19 19 C 1.37994 * 119.87381 * 179.74806 * 18 17 16 20 20 C 1.38341 * 120.12391 * 0.55093 * 19 18 17 21 21 C 1.38310 * 120.24770 * 359.44776 * 20 19 18 22 22 C 1.50696 * 119.93698 * 180.25312 * 21 20 19 23 23 C 1.47203 * 115.55117 * 214.41667 * 22 21 20 24 24 N 7.50093 * 159.33151 * 285.30397 * 2 1 3 25 25 C 1.53007 * 117.50013 * 68.74795 * 22 21 20 26 26 C 1.53004 * 117.50140 * 0.08895 * 22 21 20 27 27 C 1.38034 * 120.12536 * 0.27543 * 21 20 19 28 28 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46808 * 300.00093 * 1 2 3 30 30 H 1.08994 * 109.47008 * 60.00179 * 1 2 3 31 31 H 1.08001 * 119.77769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.90246 * 180.02562 * 5 4 3 33 33 H 0.96997 * 119.99841 * 179.97438 * 10 9 7 34 34 H 1.08006 * 120.21961 * 180.29622 * 15 6 5 35 35 H 1.08006 * 120.05990 * 359.97438 * 18 17 16 36 36 H 1.08000 * 119.93346 * 180.27340 * 19 18 17 37 37 H 1.07998 * 119.87782 * 179.72384 * 20 19 18 38 38 H 1.09003 * 117.49870 * 359.97438 * 25 22 21 39 39 H 1.09002 * 117.50232 * 145.01984 * 25 22 21 40 40 H 1.08999 * 117.50079 * 214.98211 * 26 22 21 41 41 H 1.09003 * 117.49319 * 359.97438 * 26 22 21 42 42 H 1.07994 * 120.06378 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0005 7 6 3.9255 4.9525 0.0005 8 1 3.4029 5.8143 0.3887 9 6 5.2235 5.0894 -0.5020 10 7 5.7267 4.1620 -1.2766 11 14 6.2392 6.5958 -0.0675 12 1 5.4472 7.4889 0.8159 13 1 7.4763 6.1726 0.6365 14 1 6.6012 7.3239 -1.3102 15 6 4.0742 2.5146 0.0053 16 6 3.4467 1.2789 -0.0002 17 6 4.2542 0.0345 0.0002 18 6 3.9853 -0.9736 0.9244 19 6 4.7363 -2.1313 0.9168 20 6 5.7618 -2.2875 0.0015 21 6 6.0331 -1.2905 -0.9178 22 6 7.1482 -1.4704 -1.9153 23 6 7.8812 -0.2459 -2.2760 24 7 8.4472 0.6988 -2.5536 25 6 6.9569 -2.5263 -3.0060 26 6 7.9408 -2.7780 -1.8607 27 6 5.2847 -0.1306 -0.9231 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2063 2.3108 0.0014 32 1 1.2935 4.4941 0.0019 33 1 6.6268 4.2572 -1.6254 34 1 5.1525 2.5766 0.0097 35 1 3.1882 -0.8504 1.6428 36 1 4.5259 -2.9149 1.6296 37 1 6.3500 -3.1933 0.0020 38 1 6.0246 -3.0911 -3.0018 39 1 7.3741 -2.3144 -3.9905 40 1 9.0049 -2.7316 -2.0921 41 1 7.6559 -3.5079 -1.1029 42 1 5.4971 0.6471 -1.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244071885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = 45.979594 kcal Electronic energy + Delta-G solvation = -25599.729781 eV Core-core repulsion = 22088.968232 eV Total energy + Delta-G solvation = -3510.761549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09837 -40.30915 -38.49394 -37.99974 -36.65975 -35.25498 -33.32787 -31.75337 -30.98719 -29.72147 -28.30662 -26.47384 -25.82087 -24.19745 -23.25025 -23.07274 -22.35984 -21.29826 -19.38253 -18.61853 -18.22989 -17.48910 -17.09059 -16.50142 -16.30568 -16.15934 -15.77537 -15.55700 -15.04891 -14.88491 -14.63954 -14.59821 -14.33849 -14.20308 -13.83546 -13.82516 -13.62273 -13.30776 -13.23349 -12.92933 -12.78004 -12.54151 -12.48433 -12.36215 -12.10248 -12.07101 -11.74395 -11.60953 -11.54565 -11.43458 -11.13162 -10.92062 -9.97345 -9.53142 -9.16511 -8.84023 -8.57259 -6.27645 0.27303 0.50198 0.94800 1.08299 1.30067 1.43014 1.45834 1.55246 1.67261 2.14648 2.62438 2.74339 2.81039 2.89361 3.13242 3.42966 3.64600 3.87201 3.99820 4.05467 4.20669 4.27397 4.31460 4.46851 4.51621 4.53516 4.67080 4.74683 4.77337 4.79953 4.82969 5.01569 5.03387 5.13117 5.15273 5.19531 5.24269 5.27409 5.48837 5.51473 5.63207 5.70665 5.79591 5.86596 6.05638 6.18364 6.23575 6.50680 6.52504 6.78005 6.90986 7.06255 8.29108 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.005607 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.493253 B = 4992.315413 C = 7582.448505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C 0.023 3.977 4 C -0.170 4.170 5 C -0.199 4.199 6 C 0.052 3.948 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.033 3.967 10 N -0.829 5.829 11 Si 0.973 3.027 12 H -0.250 1.250 13 H -0.272 1.272 14 H -0.268 1.268 15 C -0.138 4.138 16 C -0.080 4.080 17 C -0.033 4.033 18 C -0.106 4.106 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.049 4.049 22 C -0.046 4.046 23 C 0.257 3.743 24 N -0.484 5.484 25 C -0.123 4.123 26 C -0.110 4.110 27 C -0.123 4.123 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.279 0.721 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.150 0.850 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -19.078 1.572 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.244 6.244 3 C -0.022 4.022 4 C -0.189 4.189 5 C -0.219 4.219 6 C 0.050 3.950 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.181 4.181 10 N -0.456 5.456 11 Si 0.794 3.206 12 H -0.173 1.173 13 H -0.197 1.197 14 H -0.193 1.193 15 C -0.158 4.158 16 C -0.081 4.081 17 C -0.033 4.033 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.050 4.050 22 C -0.050 4.050 23 C -0.059 4.059 24 N -0.160 5.160 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.141 4.141 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.152 0.848 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.168 0.832 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.350 -17.853 1.001 17.884 hybrid contribution -0.117 1.867 -0.140 1.876 sum 0.233 -15.986 0.862 16.011 Atomic orbital electron populations 1.23113 0.78318 1.04534 1.00972 1.85867 1.21682 1.26423 1.90427 1.18608 0.90575 0.84312 1.08684 1.20692 0.99265 0.91947 1.06994 1.20837 0.94115 0.96651 1.10275 1.17859 0.91986 0.93701 0.91487 1.19687 0.99736 0.95220 1.38073 0.90445 1.26685 0.98706 1.00649 0.92019 1.69919 1.16366 1.35532 1.23784 0.85289 0.78057 0.78023 0.79201 1.17287 1.19679 1.19332 1.21160 0.98742 0.90660 1.05198 1.18264 0.90287 0.92915 1.06592 1.18829 0.94820 0.93619 0.96045 1.21300 0.99813 0.93523 0.97726 1.21398 0.94907 0.96891 0.99346 1.21314 0.98222 0.99274 0.93577 1.18627 0.94790 0.94664 0.96895 1.17131 0.98955 0.84119 1.04817 1.28370 0.92212 0.93602 0.91740 1.81247 1.12581 1.11113 1.11042 1.23482 1.03374 0.95389 0.93847 1.23583 0.98611 0.91348 1.01171 1.20928 0.96570 0.97685 0.98954 0.86292 0.92872 0.93572 0.84879 0.87591 0.91104 0.88200 0.86371 0.81968 0.80846 0.84822 0.87152 0.86455 0.83208 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.80 113.37 1.11 1.79 16 2 O -0.33 -12.37 8.82 -89.09 -0.79 -13.16 16 3 C 0.02 1.02 6.63 23.01 0.15 1.17 16 4 C -0.17 -7.54 8.95 22.06 0.20 -7.35 16 5 C -0.20 -9.99 9.72 22.50 0.22 -9.77 16 6 C 0.05 2.93 5.57 -21.31 -0.12 2.81 16 7 C -0.50 -28.25 9.04 23.40 0.21 -28.04 16 8 H 0.08 4.21 7.91 -2.91 -0.02 4.18 16 9 C 0.03 1.80 5.13 85.23 0.44 2.23 16 10 N -0.83 -48.05 10.96 21.81 0.24 -47.81 16 11 Si 0.97 42.05 29.59 68.60 2.03 44.08 16 12 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 C -0.14 -7.76 8.14 22.94 0.19 -7.57 16 16 C -0.08 -3.96 5.48 -19.98 -0.11 -4.06 16 17 C -0.03 -1.40 5.27 -20.05 -0.11 -1.51 16 18 C -0.11 -3.55 8.78 22.49 0.20 -3.35 16 19 C -0.11 -2.55 10.03 22.24 0.22 -2.33 16 20 C -0.11 -2.26 9.39 22.31 0.21 -2.05 16 21 C -0.05 -1.41 5.43 -19.90 -0.11 -1.52 16 22 C -0.05 -1.12 2.43 -54.73 -0.13 -1.25 16 23 C 0.26 8.77 14.08 89.45 1.26 10.03 16 24 N -0.48 -19.96 18.54 20.00 0.37 -19.59 16 25 C -0.12 -1.82 9.91 30.62 0.30 -1.52 16 26 C -0.11 -1.31 9.55 30.62 0.29 -1.02 16 27 C -0.12 -5.01 8.78 22.49 0.20 -4.81 16 28 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.32 7.65 -2.39 -0.02 1.30 16 30 H 0.05 1.21 7.65 -2.39 -0.02 1.19 16 31 H 0.13 4.82 6.26 -2.91 -0.02 4.81 16 32 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 33 H 0.28 15.35 8.30 -92.71 -0.77 14.58 16 34 H 0.10 6.08 6.15 -2.91 -0.02 6.06 16 35 H 0.12 3.95 7.69 -2.91 -0.02 3.93 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.17 1.84 5.91 -2.91 -0.02 1.83 16 38 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.15 0.82 6.07 -2.39 -0.01 0.81 16 42 H 0.08 3.81 7.45 -2.91 -0.02 3.79 16 Total: -1.00 -76.66 361.04 7.53 -69.13 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 1.06 Total: 25.47 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 4.62 Total: -58.12 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: 0.61 Total: -67.40 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.79 Total: -13.16 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -76.66 7.53 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244071885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.108 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds