Wall clock time and date at job start Tue Mar 31 2020 12:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35779 * 117.00046 * 2 1 4 4 C 1.38571 * 120.13850 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.08282 * 180.02562 * 4 3 2 6 6 C 1.38511 * 120.36593 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.27028 * 359.74307 * 6 5 4 8 8 C 1.50705 * 120.04512 * 180.25431 * 7 6 5 9 9 C 1.53003 * 117.49585 * 9.02413 * 8 7 6 10 10 C 1.52998 * 117.49732 * 300.36520 * 8 7 6 11 11 C 1.39591 * 119.91327 * 0.53240 * 7 6 5 12 12 C 1.47888 * 120.18139 * 179.74672 * 11 7 6 13 13 C 1.40044 * 119.50605 * 294.72088 * 12 11 7 14 14 C 1.35965 * 121.19053 * 179.97438 * 13 12 11 15 15 C 1.41069 * 120.11192 * 0.02562 * 14 13 12 16 16 C 1.40413 * 120.48272 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99659 * 154.62971 * 16 15 14 18 18 C 1.40286 * 119.99821 * 334.63939 * 16 15 14 19 19 N 1.30647 * 120.00358 * 334.60287 * 18 16 15 20 20 Si 1.86808 * 119.99609 * 154.60547 * 18 16 15 21 21 H 1.48498 * 109.46983 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47040 * 299.99474 * 20 18 16 23 23 H 1.48499 * 109.47220 * 59.99993 * 20 18 16 24 24 C 1.46655 * 119.03358 * 0.25224 * 15 14 13 25 25 C 1.43201 * 120.56370 * 179.74569 * 24 15 14 26 26 N 5.86241 * 126.08949 * 138.91265 * 2 1 3 27 27 C 1.39057 * 118.87163 * 359.48721 * 24 15 14 28 28 H 1.08998 * 109.46713 * 299.99892 * 1 2 3 29 29 H 1.08994 * 109.47047 * 59.99424 * 1 2 3 30 30 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.95881 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.82004 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.86520 * 179.97438 * 6 5 4 34 34 H 1.08998 * 115.55081 * 154.69257 * 8 7 6 35 35 H 1.09001 * 117.50276 * 359.97438 * 9 8 7 36 36 H 1.09001 * 117.49690 * 145.01974 * 9 8 7 37 37 H 1.08999 * 117.49807 * 214.97683 * 10 8 7 38 38 H 1.09005 * 117.50254 * 359.97438 * 10 8 7 39 39 H 1.08000 * 119.40141 * 0.02562 * 13 12 11 40 40 H 1.07999 * 119.94239 * 180.02562 * 14 13 12 41 41 H 0.96995 * 119.99427 * 354.18271 * 19 18 16 42 42 H 1.08003 * 120.09612 * 180.21826 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2936 2.3738 -0.0005 5 6 1.9221 3.6043 -0.0011 6 6 3.3049 3.6843 -0.0005 7 6 4.0675 2.5357 0.0059 8 6 5.5717 2.6286 0.0122 9 6 6.1931 4.0106 0.2241 10 6 6.2395 3.3538 -1.1578 11 6 3.4445 1.2865 0.0006 12 6 4.2568 0.0506 0.0018 13 6 5.0665 -0.2436 -1.1023 14 6 5.8274 -1.3699 -1.1372 15 6 5.8118 -2.2686 -0.0500 16 6 6.5941 -3.4342 -0.0780 17 1 6.9104 -3.8946 0.8462 18 6 6.9651 -4.0005 -1.3067 19 7 6.2334 -3.7932 -2.3691 20 14 8.5053 -5.0512 -1.4238 21 1 8.6741 -5.5281 -2.8199 22 1 9.6870 -4.2428 -1.0301 23 1 8.3786 -6.2183 -0.5144 24 6 4.9618 -1.9707 1.1074 25 6 4.9167 -2.8630 2.2266 26 7 4.8823 -3.5706 3.1135 27 6 4.2046 -0.8044 1.1020 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2150 2.3191 -0.0005 32 1 1.3319 4.5089 -0.0019 33 1 3.7877 4.6503 -0.0014 34 1 6.0939 1.7714 0.4372 35 1 5.5141 4.8526 0.3585 36 1 7.1244 4.0625 0.7882 37 1 7.2013 2.9739 -1.5023 38 1 5.5911 3.7633 -1.9324 39 1 5.0874 0.4368 -1.9408 40 1 6.4449 -1.5767 -1.9988 41 1 5.3905 -3.3195 -2.2924 42 1 3.5745 -0.5639 1.9455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244254549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:14 Heat of formation + Delta-G solvation = 46.095908 kcal Electronic energy + Delta-G solvation = -25744.805949 eV Core-core repulsion = 22234.049445 eV Total energy + Delta-G solvation = -3510.756505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11398 -38.19461 -37.67901 -35.81235 -35.18774 -34.44701 -31.58870 -30.00712 -29.62731 -28.76042 -27.14341 -25.48708 -23.40737 -22.57925 -22.26245 -22.03655 -20.56364 -19.90541 -18.36824 -17.64462 -16.81516 -16.12728 -15.58634 -15.47237 -15.04172 -14.79773 -14.60743 -14.25447 -14.07527 -13.53436 -13.27663 -12.81842 -12.77659 -12.56411 -12.41386 -12.25270 -11.90173 -11.76018 -11.66359 -11.46489 -11.34432 -11.28205 -11.14575 -11.07606 -10.69364 -10.54696 -10.45460 -10.29807 -10.17311 -9.97733 -9.73212 -9.29317 -8.33436 -7.98391 -7.88541 -7.63465 -7.39604 -4.77990 1.50307 1.68985 2.17506 2.60901 3.03022 3.12247 3.23194 3.54056 3.78722 3.80057 3.89595 4.07500 4.30262 4.42194 4.79791 4.98264 5.08122 5.16601 5.17606 5.23104 5.24666 5.25617 5.33404 5.41365 5.57770 5.59220 5.74447 5.76655 5.93635 5.95078 6.02178 6.12111 6.22690 6.26317 6.41882 6.58364 6.63037 6.72501 6.75278 6.88501 7.06245 7.08765 7.31733 7.43866 7.51305 7.66563 7.76323 7.81481 7.95103 8.35765 8.47078 8.79860 9.65576 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.004368 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.028619 B = 6408.990201 C = 7413.626213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.298 6.298 3 C 0.128 3.872 4 C -0.217 4.217 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.014 4.014 8 C -0.103 4.103 9 C -0.183 4.183 10 C -0.168 4.168 11 C -0.022 4.022 12 C -0.197 4.197 13 C -0.028 4.028 14 C -0.220 4.220 15 C 0.134 3.866 16 C -0.475 4.475 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.761 5.761 20 Si 1.065 2.935 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.193 4.193 25 C 0.301 3.699 26 N -0.510 5.510 27 C 0.017 3.983 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.307 0.693 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 12.946 -1.831 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.083 3.917 4 C -0.235 4.235 5 C -0.114 4.114 6 C -0.178 4.178 7 C -0.014 4.014 8 C -0.121 4.121 9 C -0.219 4.219 10 C -0.205 4.205 11 C -0.023 4.023 12 C -0.198 4.198 13 C -0.047 4.047 14 C -0.239 4.239 15 C 0.128 3.872 16 C -0.501 4.501 17 H 0.102 0.898 18 C -0.188 4.188 19 N -0.382 5.382 20 Si 0.887 3.113 21 H -0.193 1.193 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.198 4.198 25 C -0.009 4.009 26 N -0.189 5.189 27 C -0.004 4.004 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.941 10.815 -1.582 11.619 hybrid contribution -1.471 1.366 0.699 2.126 sum -5.412 12.181 -0.883 13.358 Atomic orbital electron populations 1.23005 0.79527 1.03616 1.00647 1.86213 1.20117 1.26515 1.88246 1.19227 0.91863 0.84003 0.96652 1.21075 0.99469 0.92479 1.10506 1.20753 0.94345 0.96523 0.99753 1.20787 0.93515 0.97821 1.05704 1.19055 0.93191 0.91448 0.97748 1.21002 0.91300 0.96415 1.03400 1.23065 1.02682 0.96128 1.00071 1.22976 1.02301 1.03743 0.91493 1.18008 0.88846 0.93193 1.02214 1.17388 1.07884 0.97028 0.97541 1.20330 0.93680 0.95466 0.95263 1.20721 1.05795 0.96463 1.00961 1.18449 0.87442 0.91894 0.89378 1.20810 1.24996 1.07567 0.96724 0.89798 1.27323 1.03100 0.97380 0.91016 1.70395 1.10772 1.25047 1.31958 0.83618 0.73702 0.76225 0.77754 1.19336 1.19399 1.19683 1.16668 1.10608 0.97689 0.94882 1.25721 0.91287 0.92002 0.91867 1.80976 1.12885 1.11767 1.13305 1.20477 0.93496 0.90912 0.95528 0.93183 0.93118 0.88537 0.86136 0.86565 0.86378 0.85987 0.88774 0.88732 0.88523 0.88945 0.88766 0.86951 0.87848 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.05 9.69 -19.05 -0.18 -5.23 16 3 C 0.13 2.13 6.66 -38.75 -0.26 1.87 16 4 C -0.22 -2.98 9.03 -39.48 -0.36 -3.33 16 5 C -0.10 -1.21 10.03 -39.50 -0.40 -1.61 16 6 C -0.16 -2.15 9.28 -39.61 -0.37 -2.52 16 7 C -0.01 -0.22 5.63 -104.25 -0.59 -0.81 16 8 C -0.10 -1.50 4.98 -91.77 -0.46 -1.95 16 9 C -0.18 -2.11 9.86 -26.69 -0.26 -2.37 16 10 C -0.17 -2.07 10.16 -26.69 -0.27 -2.34 16 11 C -0.02 -0.39 5.28 -104.74 -0.55 -0.94 16 12 C -0.20 -3.92 3.92 -104.82 -0.41 -4.33 16 13 C -0.03 -0.57 8.59 -39.72 -0.34 -0.91 16 14 C -0.22 -4.91 7.88 -39.32 -0.31 -5.22 16 15 C 0.13 3.22 5.46 -104.61 -0.57 2.65 16 16 C -0.47 -11.64 8.48 -37.99 -0.32 -11.96 16 17 H 0.08 2.11 7.45 -52.49 -0.39 1.72 16 18 C 0.04 0.88 4.95 -17.29 -0.09 0.80 16 19 N -0.76 -18.13 12.31 55.57 0.68 -17.45 16 20 Si 1.07 19.83 30.01 -169.99 -5.10 14.73 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 C -0.19 -4.49 5.93 -104.27 -0.62 -5.11 16 25 C 0.30 7.26 14.30 -22.50 -0.32 6.94 16 26 N -0.51 -12.61 18.53 41.80 0.77 -11.84 16 27 C 0.02 0.36 9.11 -38.83 -0.35 0.00 16 28 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.33 6.02 -52.49 -0.32 1.01 16 34 H 0.12 2.02 7.13 -51.93 -0.37 1.64 16 35 H 0.09 0.97 6.19 -51.93 -0.32 0.65 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.55 6.49 -52.49 -0.34 2.21 16 41 H 0.31 7.48 6.68 -40.82 -0.27 7.21 16 42 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -26.72 359.51 -9.16 -35.87 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.89 Total: 8.34 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -5.85 Total: -29.84 kcal Atomic # 7 Polarization: -30.74 SS G_CDS: 1.46 Total: -29.29 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.10 Total: 14.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.72 -9.16 -35.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244254549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.968 kcal (2) G-P(sol) polarization free energy of solvation -26.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds