Wall clock time and date at job start Tue Mar 31 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35687 * 117.00107 * 2 1 4 4 C 1.37911 * 120.18847 * 0.25096 * 3 2 1 5 5 C 1.39716 * 119.92798 * 180.27043 * 4 3 2 6 6 C 1.47890 * 119.84451 * 179.72513 * 5 4 3 7 7 C 1.40654 * 119.74021 * 359.73380 * 6 5 4 8 8 C 1.35678 * 120.82040 * 179.97438 * 7 6 5 9 9 C 1.40824 * 120.03418 * 0.02562 * 8 7 6 10 10 C 1.40293 * 120.94396 * 179.97438 * 9 8 7 11 11 C 1.37894 * 119.56877 * 180.29986 * 10 9 8 12 12 N 1.39491 * 119.65585 * 179.72579 * 11 10 9 13 13 C 1.40054 * 120.68985 * 359.40104 * 11 10 9 14 14 C 1.35888 * 120.86858 * 0.62846 * 13 11 10 15 15 C 1.40758 * 119.91764 * 359.67879 * 14 13 11 16 16 C 1.38596 * 119.74390 * 179.70665 * 6 5 4 17 17 C 1.40139 * 120.30901 * 359.45657 * 5 4 3 18 18 C 1.36081 * 120.38570 * 0.29076 * 17 5 4 19 19 C 1.40934 * 120.06515 * 359.97438 * 18 17 5 20 20 C 1.40795 * 120.15395 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99813 * 204.94218 * 20 19 18 22 22 C 1.39960 * 120.00113 * 24.93813 * 20 19 18 23 23 N 1.30855 * 120.00183 * 17.83864 * 22 20 19 24 24 Si 1.86805 * 120.00007 * 197.83569 * 22 20 19 25 25 H 1.48494 * 109.47022 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47113 * 120.00663 * 24 22 20 27 27 H 1.48501 * 109.46968 * 240.00247 * 24 22 20 28 28 H 1.09003 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47327 * 299.99873 * 1 2 3 30 30 H 1.09001 * 109.47633 * 59.99822 * 1 2 3 31 31 H 1.08000 * 120.03573 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.59231 * 359.96726 * 7 6 5 33 33 H 1.08000 * 119.98088 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.21146 * 0.02742 * 10 9 8 35 35 H 0.97005 * 119.99446 * 359.97438 * 12 11 10 36 36 H 0.96998 * 120.00322 * 180.02562 * 12 11 10 37 37 H 1.07995 * 119.56233 * 180.28426 * 13 11 10 38 38 H 1.07995 * 120.03979 * 179.70188 * 14 13 11 39 39 H 1.08000 * 120.25692 * 0.04717 * 16 6 5 40 40 H 1.07997 * 119.81111 * 180.27329 * 17 5 4 41 41 H 1.08003 * 119.96548 * 179.97438 * 18 17 5 42 42 H 0.97000 * 120.00087 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2977 2.3681 0.0052 5 6 1.9376 3.6100 -0.0005 6 6 1.1344 4.8518 -0.0011 7 6 -0.2700 4.7744 -0.0015 8 6 -1.0282 5.8996 -0.0014 9 6 -0.4111 7.1654 -0.0016 10 6 -1.1765 8.3411 -0.0021 11 6 -0.5427 9.5657 -0.0085 12 7 -1.3020 10.7358 -0.0148 13 6 0.8555 9.6470 -0.0018 14 6 1.6192 8.5230 -0.0018 15 6 1.0047 7.2567 -0.0016 16 6 1.7714 6.0827 -0.0006 17 6 3.3370 3.6846 -0.0001 18 6 4.0868 2.5490 -0.0001 19 6 3.4580 1.2877 0.0001 20 6 4.2319 0.1115 0.0007 21 1 3.8204 -0.8058 -0.3936 22 6 5.5345 0.1312 0.5122 23 7 5.9161 1.1094 1.2931 24 14 6.7285 -1.2389 0.0800 25 1 6.0570 -2.2173 -0.8128 26 1 7.9097 -0.6657 -0.6138 27 1 7.1681 -1.9227 1.3228 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 0.2189 2.3158 0.0097 32 1 -0.7508 3.8074 -0.0019 33 1 -2.1056 5.8243 -0.0013 34 1 -2.2551 8.2873 -0.0019 35 1 -2.2707 10.6853 -0.0151 36 1 -0.8613 11.6000 -0.0197 37 1 1.3329 10.6157 -0.0023 38 1 2.6963 8.6013 -0.0015 39 1 2.8500 6.1373 -0.0006 40 1 3.8233 4.6489 -0.0001 41 1 5.1649 2.6143 -0.0002 42 1 6.8188 1.1228 1.6479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245365158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:16 Heat of formation + Delta-G solvation = 4.125817 kcal Electronic energy + Delta-G solvation = -24845.000651 eV Core-core repulsion = 21332.424187 eV Total energy + Delta-G solvation = -3512.576465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17479 -40.37771 -38.46223 -37.48122 -35.71693 -34.55773 -33.35263 -31.56395 -31.01541 -30.12097 -28.94240 -28.06190 -26.37347 -24.39824 -23.70467 -23.07969 -22.05092 -21.65516 -19.44203 -18.77488 -18.36422 -17.68168 -17.38727 -17.06451 -16.45332 -16.24744 -16.16520 -15.64207 -15.44498 -15.14125 -14.77974 -14.61501 -14.35133 -14.24476 -14.03553 -13.78358 -13.59386 -13.30203 -13.08449 -12.83225 -12.80852 -12.66914 -12.44366 -12.20486 -11.98529 -11.79887 -11.71939 -11.35966 -11.23552 -11.14566 -11.03958 -10.40252 -9.27639 -9.05251 -8.93570 -8.62778 -7.92299 -6.16134 -0.28682 0.11273 0.95785 1.14287 1.31758 1.38764 1.52205 1.54704 2.21051 2.27827 2.78466 2.90780 3.07865 3.37555 3.74612 3.80148 4.03112 4.06257 4.21946 4.25738 4.43304 4.47751 4.48813 4.49448 4.56667 4.57061 4.63357 4.74699 4.92413 4.99490 5.09539 5.13296 5.23172 5.28760 5.36649 5.41828 5.49749 5.51036 5.65061 5.76030 5.85922 5.94026 5.97221 6.22963 6.25963 6.27853 6.50948 6.66046 6.75341 6.86055 7.07852 7.21643 8.29761 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002886 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.868220 B = 9699.013024 C =10937.530496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.006 4.006 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.036 4.036 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.031 4.031 10 C -0.219 4.219 11 C 0.210 3.790 12 N -0.865 5.865 13 C -0.170 4.170 14 C -0.077 4.077 15 C -0.103 4.103 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.170 4.170 19 C 0.067 3.933 20 C -0.470 4.470 21 H 0.073 0.927 22 C 0.033 3.967 23 N -0.817 5.817 24 Si 0.984 3.016 25 H -0.261 1.261 26 H -0.260 1.260 27 H -0.264 1.264 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.406 0.594 36 H 0.407 0.593 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 14.727 -1.964 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.050 4.050 4 C -0.178 4.178 5 C -0.159 4.159 6 C -0.037 4.037 7 C -0.134 4.134 8 C -0.139 4.139 9 C -0.032 4.032 10 C -0.243 4.243 11 C 0.104 3.896 12 N -0.405 5.405 13 C -0.190 4.190 14 C -0.096 4.096 15 C -0.104 4.104 16 C -0.142 4.142 17 C -0.129 4.129 18 C -0.190 4.190 19 C 0.065 3.935 20 C -0.499 4.499 21 H 0.091 0.909 22 C -0.183 4.183 23 N -0.443 5.443 24 Si 0.804 3.196 25 H -0.184 1.184 26 H -0.185 1.185 27 H -0.189 1.189 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.237 0.763 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.112 14.627 -1.812 18.459 hybrid contribution 0.387 -0.451 0.042 0.596 sum -10.725 14.176 -1.769 17.864 Atomic orbital electron populations 1.23088 0.78721 1.04273 1.00884 1.85912 1.21414 1.27641 1.90385 1.19246 0.92241 0.83972 1.09530 1.20956 0.98704 0.91371 1.06777 1.18229 0.92385 0.91555 1.13683 1.18811 0.93244 0.92092 0.99543 1.21012 0.92694 0.99277 1.00436 1.21050 1.00351 0.90887 1.01658 1.18012 0.92213 0.94090 0.98883 1.20589 0.99638 0.89915 1.14194 1.17797 0.91020 0.87599 0.93195 1.42381 1.08998 1.04887 1.84235 1.20678 0.91965 0.99574 1.06811 1.21077 1.00522 0.90856 0.97096 1.18114 0.93198 0.93804 1.05293 1.21373 0.99396 0.91178 1.02270 1.20688 0.93226 0.97447 1.01519 1.20720 0.99251 0.91241 1.07772 1.17518 0.88876 0.94631 0.92523 1.19621 0.98232 0.96591 1.35430 0.90881 1.26793 0.99941 0.99585 0.91962 1.69881 1.20111 1.32210 1.22064 0.85138 0.77390 0.77824 0.79254 1.18449 1.18467 1.18896 0.86891 0.93270 0.92955 0.85397 0.85832 0.83559 0.84458 0.76392 0.76307 0.83469 0.84363 0.86052 0.87058 0.87141 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.81 113.37 1.11 1.95 16 2 O -0.34 -16.00 9.77 -90.06 -0.88 -16.88 16 3 C -0.01 -0.29 6.71 23.00 0.15 -0.13 16 4 C -0.16 -7.30 8.39 22.55 0.19 -7.11 16 5 C -0.16 -7.21 5.89 -19.90 -0.12 -7.33 16 6 C -0.04 -1.44 5.87 -20.05 -0.12 -1.56 16 7 C -0.12 -3.94 9.32 22.27 0.21 -3.73 16 8 C -0.12 -3.51 9.73 22.31 0.22 -3.29 16 9 C -0.03 -0.92 5.75 -21.25 -0.12 -1.04 16 10 C -0.22 -5.04 9.62 22.69 0.22 -4.83 16 11 C 0.21 4.13 6.74 38.28 0.26 4.39 16 12 N -0.87 -9.95 9.07 -51.39 -0.47 -10.42 16 13 C -0.17 -3.44 9.78 22.16 0.22 -3.22 16 14 C -0.08 -1.94 9.74 22.34 0.22 -1.72 16 15 C -0.10 -3.24 5.74 -21.28 -0.12 -3.37 16 16 C -0.12 -4.50 9.16 22.84 0.21 -4.29 16 17 C -0.11 -5.36 9.33 22.23 0.21 -5.15 16 18 C -0.17 -9.20 8.61 22.43 0.19 -9.01 16 19 C 0.07 3.79 5.58 -21.18 -0.12 3.67 16 20 C -0.47 -26.38 8.69 23.31 0.20 -26.18 16 21 H 0.07 4.11 7.64 -2.91 -0.02 4.09 16 22 C 0.03 1.67 5.13 85.26 0.44 2.11 16 23 N -0.82 -43.11 10.97 21.83 0.24 -42.87 16 24 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 28 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 30 H 0.05 1.59 7.67 -2.39 -0.02 1.57 16 31 H 0.13 4.98 4.36 -2.91 -0.01 4.97 16 32 H 0.12 3.86 6.12 -2.91 -0.02 3.84 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.41 3.31 8.82 -92.70 -0.82 2.49 16 36 H 0.41 2.95 8.83 -92.71 -0.82 2.13 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.12 4.27 6.12 -2.91 -0.02 4.25 16 40 H 0.11 4.82 6.13 -2.91 -0.02 4.80 16 41 H 0.11 6.14 6.17 -2.91 -0.02 6.12 16 42 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -68.36 348.52 3.83 -64.54 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.54 Total: 34.40 kcal Atomic # 6 Polarization: -73.27 SS G_CDS: 3.44 Total: -69.83 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.23 Total: -53.29 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.88 Total: -16.88 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -68.36 3.83 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245365158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.662 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds