Wall clock time and date at job start Tue Mar 31 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35932 * 116.99765 * 2 1 4 4 C 1.36329 * 119.59792 * 359.73173 * 3 2 1 5 5 C 1.40552 * 119.87688 * 180.27808 * 4 3 2 6 6 C 1.40538 * 121.08472 * 179.97438 * 5 4 3 7 7 C 1.36134 * 119.69913 * 180.02562 * 6 5 4 8 8 C 1.39349 * 120.99359 * 359.97438 * 7 6 5 9 9 C 1.36112 * 120.97391 * 0.02562 * 8 7 6 10 10 C 1.40574 * 119.67337 * 359.97438 * 9 8 7 11 11 C 1.40476 * 121.12562 * 179.97438 * 10 9 8 12 12 C 1.37687 * 119.56981 * 180.02562 * 11 10 9 13 13 N 1.39607 * 119.69139 * 180.02562 * 12 11 10 14 14 C 1.38626 * 120.00455 * 259.24428 * 13 12 11 15 15 C 1.38835 * 120.29567 * 4.71504 * 14 13 12 16 16 C 1.38108 * 120.02026 * 180.02562 * 15 14 13 17 17 C 1.38940 * 120.63479 * 359.97195 * 16 15 14 18 18 C 1.36428 * 120.61004 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.95182 * 359.73804 * 18 17 16 20 20 C 1.41000 * 120.31108 * 180.26017 * 19 18 17 21 21 H 1.08003 * 120.00426 * 209.07399 * 20 19 18 22 22 C 1.39911 * 119.99786 * 29.07756 * 20 19 18 23 23 N 1.30890 * 120.00075 * 15.02690 * 22 20 19 24 24 Si 1.86801 * 119.99809 * 195.02977 * 22 20 19 25 25 H 1.48502 * 109.47341 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47373 * 119.99979 * 24 22 20 27 27 H 1.48500 * 109.47149 * 239.99962 * 24 22 20 28 28 H 1.08995 * 109.46966 * 299.99791 * 1 2 3 29 29 H 1.09001 * 109.47422 * 59.99463 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.06055 * 0.25486 * 4 3 2 32 32 H 1.08002 * 120.14723 * 0.02562 * 6 5 4 33 33 H 1.07994 * 119.49831 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.51265 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.16742 * 180.02562 * 9 8 7 36 36 H 1.08008 * 120.21310 * 0.05035 * 11 10 9 37 37 H 0.97000 * 119.99816 * 79.23934 * 13 12 11 38 38 H 1.07997 * 119.99409 * 359.97438 * 15 14 13 39 39 H 1.07997 * 119.67990 * 179.97438 * 16 15 14 40 40 H 1.07992 * 119.69447 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.01771 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99854 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2956 2.3493 -0.0056 5 6 1.9275 3.6047 -0.0115 6 6 1.1787 4.7939 -0.0178 7 6 1.8200 5.9947 -0.0240 8 6 3.2117 6.0650 -0.0237 9 6 3.9702 4.9348 -0.0176 10 6 3.3437 3.6763 -0.0111 11 6 4.0966 2.4904 -0.0053 12 6 3.4498 1.2749 0.0005 13 7 4.1956 0.0948 0.0068 14 6 4.3771 -0.6169 -1.1690 15 6 3.9040 -0.1127 -2.3729 16 6 4.0876 -0.8267 -3.5408 17 6 4.7444 -2.0509 -3.5264 18 6 5.2197 -2.5705 -2.3579 19 6 5.0510 -1.8619 -1.1537 20 6 5.5441 -2.3892 0.0574 21 1 5.0561 -2.1474 0.9901 22 6 6.6656 -3.2257 0.0510 23 7 7.4296 -3.2878 -1.0100 24 14 7.0725 -4.2539 1.5565 25 1 6.0609 -4.0042 2.6147 26 1 7.0621 -5.6930 1.1907 27 1 8.4184 -3.8812 2.0614 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2174 2.2863 -0.0058 32 1 0.0994 4.7553 -0.0178 33 1 1.2414 6.9066 -0.0293 34 1 3.6957 7.0305 -0.0291 35 1 5.0479 5.0044 -0.0170 36 1 5.1759 2.5318 -0.0050 37 1 4.5868 -0.2273 0.8339 38 1 3.3917 0.8377 -2.3962 39 1 3.7170 -0.4295 -4.4742 40 1 4.8791 -2.5966 -4.4485 41 1 5.7285 -3.5232 -2.3577 42 1 8.2073 -3.8675 -1.0143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249551060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:45 Heat of formation + Delta-G solvation = 35.503348 kcal Electronic energy + Delta-G solvation = -25774.362366 eV Core-core repulsion = 22263.146533 eV Total energy + Delta-G solvation = -3511.215833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58224 -38.69281 -37.91708 -35.89727 -33.74723 -33.45058 -32.24746 -29.88211 -29.17636 -28.72791 -27.38053 -26.99382 -25.00547 -22.85317 -22.52553 -21.75466 -20.83722 -20.05662 -18.18423 -17.21368 -17.03222 -16.94696 -16.21787 -15.42697 -15.25773 -15.07077 -14.81820 -14.48108 -14.18669 -13.86103 -13.43773 -13.32905 -13.01871 -12.75386 -12.59832 -12.41423 -12.21381 -11.78051 -11.62908 -11.60438 -11.28338 -11.09935 -11.04067 -10.83865 -10.77877 -10.42693 -10.27206 -9.76202 -9.56294 -9.42281 -9.14060 -9.08842 -7.94895 -7.62317 -7.28546 -6.67957 -6.29668 -4.12968 0.65090 1.17922 2.16888 2.86452 3.06505 3.13377 3.17873 3.24191 3.28141 3.48099 4.02312 4.21679 4.37635 4.69789 4.77492 4.91150 5.04974 5.14423 5.16763 5.24753 5.30052 5.39392 5.48045 5.59371 5.78055 5.80139 5.85993 6.03273 6.12085 6.24505 6.32691 6.49932 6.51461 6.58621 6.63172 6.68768 6.83883 7.01640 7.07582 7.23247 7.33798 7.47827 7.61901 7.77204 7.90704 8.22579 8.28041 8.48330 8.78060 8.84457 9.03406 9.14958 10.35864 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003740 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.625729 B = 7485.296551 C = 7700.104967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.291 6.291 3 C 0.140 3.860 4 C -0.224 4.224 5 C -0.019 4.019 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.137 4.137 9 C -0.091 4.091 10 C -0.071 4.071 11 C -0.090 4.090 12 C 0.167 3.833 13 N -0.695 5.695 14 C 0.114 3.886 15 C -0.159 4.159 16 C -0.197 4.197 17 C -0.142 4.142 18 C -0.134 4.134 19 C 0.075 3.925 20 C -0.468 4.468 21 H 0.072 0.928 22 C 0.077 3.923 23 N -0.805 5.805 24 Si 0.902 3.098 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.406 0.594 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 12.328 3.461 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.203 6.203 3 C 0.092 3.908 4 C -0.243 4.243 5 C -0.019 4.019 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.155 4.155 9 C -0.109 4.109 10 C -0.072 4.072 11 C -0.110 4.110 12 C 0.072 3.928 13 N -0.327 5.327 14 C 0.017 3.983 15 C -0.181 4.181 16 C -0.217 4.217 17 C -0.162 4.162 18 C -0.155 4.155 19 C 0.071 3.929 20 C -0.499 4.499 21 H 0.090 0.910 22 C -0.138 4.138 23 N -0.432 5.432 24 Si 0.727 3.273 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.203 1.203 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.244 0.756 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.712 12.077 3.311 15.847 hybrid contribution 0.110 -0.430 0.849 0.958 sum -9.602 11.647 4.160 15.657 Atomic orbital electron populations 1.23055 0.79341 1.03836 1.00756 1.86305 1.20351 1.26186 1.87462 1.19484 0.92367 0.84519 0.94432 1.20819 0.99577 0.91257 1.12662 1.17743 0.92324 0.93002 0.98849 1.20898 0.99245 0.91737 1.01695 1.20760 0.94641 0.97533 1.00400 1.20718 0.93927 0.98273 1.02626 1.21015 0.99744 0.91473 0.98647 1.17940 0.92440 0.93526 1.03248 1.21584 1.00132 0.90129 0.99160 1.16909 0.86651 0.87944 1.01302 1.41152 1.58479 1.23226 1.09863 1.17838 1.03814 0.92199 0.84468 1.20029 1.06289 0.99611 0.92177 1.20130 1.07942 0.97816 0.95785 1.20293 1.02224 0.96617 0.97059 1.20746 1.02873 1.00191 0.91661 1.17182 0.92914 0.88656 0.94138 1.19144 1.10602 1.26346 0.93851 0.91023 1.25735 0.95261 0.95789 0.97045 1.69847 1.12065 1.32032 1.29231 0.86371 0.78715 0.80055 0.82144 1.18697 1.19973 1.20292 0.93053 0.92876 0.88336 0.85299 0.86148 0.86489 0.86404 0.85723 0.84438 0.75574 0.89777 0.89760 0.89806 0.86785 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.30 16 2 O -0.29 -5.13 10.21 -19.52 -0.20 -5.33 16 3 C 0.14 2.42 6.41 -39.41 -0.25 2.16 16 4 C -0.22 -3.26 8.72 -39.40 -0.34 -3.60 16 5 C -0.02 -0.27 5.74 -106.80 -0.61 -0.89 16 6 C -0.12 -1.39 9.76 -39.47 -0.39 -1.78 16 7 C -0.12 -1.23 9.95 -39.92 -0.40 -1.63 16 8 C -0.14 -1.51 9.95 -39.93 -0.40 -1.91 16 9 C -0.09 -1.14 9.76 -39.47 -0.39 -1.53 16 10 C -0.07 -1.05 5.74 -106.81 -0.61 -1.67 16 11 C -0.09 -1.48 9.71 -38.94 -0.38 -1.86 16 12 C 0.17 3.09 4.41 -83.66 -0.37 2.72 16 13 N -0.70 -14.70 4.99 -7.97 -0.04 -14.74 16 14 C 0.11 2.76 6.65 -83.30 -0.55 2.20 16 15 C -0.16 -3.75 9.24 -39.41 -0.36 -4.11 16 16 C -0.20 -4.61 10.03 -39.37 -0.40 -5.01 16 17 C -0.14 -3.46 9.97 -39.97 -0.40 -3.86 16 18 C -0.13 -3.55 8.60 -39.29 -0.34 -3.88 16 19 C 0.08 2.00 5.54 -106.63 -0.59 1.41 16 20 C -0.47 -12.19 8.39 -37.91 -0.32 -12.50 16 21 H 0.07 1.79 6.87 -52.48 -0.36 1.43 16 22 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 23 N -0.80 -21.07 11.10 55.55 0.62 -20.45 16 24 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 25 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 28 H 0.05 0.52 7.64 -51.93 -0.40 0.12 16 29 H 0.05 0.58 7.62 -51.93 -0.40 0.18 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.13 1.53 6.17 -52.49 -0.32 1.21 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 37 H 0.41 8.47 7.15 -40.82 -0.29 8.18 16 38 H 0.08 1.90 6.85 -52.49 -0.36 1.54 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.08 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.11 3.11 6.40 -52.49 -0.34 2.77 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -29.53 352.31 -10.52 -40.05 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.98 Total: 13.85 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -6.19 Total: -32.56 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.58 Total: -35.20 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.20 Total: -5.33 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.53 -10.52 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249551060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.555 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds