Wall clock time and date at job start Tue Mar 31 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35932 * 116.99765 * 2 1 4 4 C 1.36329 * 119.59792 * 359.73173 * 3 2 1 5 5 C 1.40552 * 119.87688 * 180.27808 * 4 3 2 6 6 C 1.40538 * 121.08472 * 179.97438 * 5 4 3 7 7 C 1.36134 * 119.69913 * 180.02562 * 6 5 4 8 8 C 1.39349 * 120.99359 * 359.97438 * 7 6 5 9 9 C 1.36112 * 120.97391 * 0.02562 * 8 7 6 10 10 C 1.40574 * 119.67337 * 359.97438 * 9 8 7 11 11 C 1.40476 * 121.12562 * 179.97438 * 10 9 8 12 12 C 1.37687 * 119.56981 * 180.02562 * 11 10 9 13 13 N 1.39607 * 119.69139 * 180.02562 * 12 11 10 14 14 C 1.38626 * 120.00455 * 259.24428 * 13 12 11 15 15 C 1.38835 * 120.29567 * 4.71504 * 14 13 12 16 16 C 1.38108 * 120.02026 * 180.02562 * 15 14 13 17 17 C 1.38940 * 120.63479 * 359.97195 * 16 15 14 18 18 C 1.36428 * 120.61004 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.95182 * 359.73804 * 18 17 16 20 20 C 1.41000 * 120.31108 * 180.26017 * 19 18 17 21 21 H 1.08003 * 120.00426 * 209.07399 * 20 19 18 22 22 C 1.39911 * 119.99786 * 29.07756 * 20 19 18 23 23 N 1.30890 * 120.00075 * 15.02690 * 22 20 19 24 24 Si 1.86801 * 119.99809 * 195.02977 * 22 20 19 25 25 H 1.48502 * 109.47341 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47373 * 119.99979 * 24 22 20 27 27 H 1.48500 * 109.47149 * 239.99962 * 24 22 20 28 28 H 1.08995 * 109.46966 * 299.99791 * 1 2 3 29 29 H 1.09001 * 109.47422 * 59.99463 * 1 2 3 30 30 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.06055 * 0.25486 * 4 3 2 32 32 H 1.08002 * 120.14723 * 0.02562 * 6 5 4 33 33 H 1.07994 * 119.49831 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.51265 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.16742 * 180.02562 * 9 8 7 36 36 H 1.08008 * 120.21310 * 0.05035 * 11 10 9 37 37 H 0.97000 * 119.99816 * 79.23934 * 13 12 11 38 38 H 1.07997 * 119.99409 * 359.97438 * 15 14 13 39 39 H 1.07997 * 119.67990 * 179.97438 * 16 15 14 40 40 H 1.07992 * 119.69447 * 179.97438 * 17 16 15 41 41 H 1.07998 * 120.01771 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99854 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2956 2.3493 -0.0056 5 6 1.9275 3.6047 -0.0115 6 6 1.1787 4.7939 -0.0178 7 6 1.8200 5.9947 -0.0240 8 6 3.2117 6.0650 -0.0237 9 6 3.9702 4.9348 -0.0176 10 6 3.3437 3.6763 -0.0111 11 6 4.0966 2.4904 -0.0053 12 6 3.4498 1.2749 0.0005 13 7 4.1956 0.0948 0.0068 14 6 4.3771 -0.6169 -1.1690 15 6 3.9040 -0.1127 -2.3729 16 6 4.0876 -0.8267 -3.5408 17 6 4.7444 -2.0509 -3.5264 18 6 5.2197 -2.5705 -2.3579 19 6 5.0510 -1.8619 -1.1537 20 6 5.5441 -2.3892 0.0574 21 1 5.0561 -2.1474 0.9901 22 6 6.6656 -3.2257 0.0510 23 7 7.4296 -3.2878 -1.0100 24 14 7.0725 -4.2539 1.5565 25 1 6.0609 -4.0042 2.6147 26 1 7.0621 -5.6930 1.1907 27 1 8.4184 -3.8812 2.0614 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2174 2.2863 -0.0058 32 1 0.0994 4.7553 -0.0178 33 1 1.2414 6.9066 -0.0293 34 1 3.6957 7.0305 -0.0291 35 1 5.0479 5.0044 -0.0170 36 1 5.1759 2.5318 -0.0050 37 1 4.5868 -0.2273 0.8339 38 1 3.3917 0.8377 -2.3962 39 1 3.7170 -0.4295 -4.4742 40 1 4.8791 -2.5966 -4.4485 41 1 5.7285 -3.5232 -2.3577 42 1 8.2073 -3.8675 -1.0143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249551060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:44 Heat of formation + Delta-G solvation = 21.665917 kcal Electronic energy + Delta-G solvation = -25774.962402 eV Core-core repulsion = 22263.146533 eV Total energy + Delta-G solvation = -3511.815869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73542 -39.88119 -39.54624 -37.27381 -35.39346 -35.05196 -33.32618 -31.58790 -30.71443 -29.91755 -28.73968 -28.15427 -26.90508 -24.10044 -23.62508 -22.81904 -22.66414 -21.77248 -19.27238 -19.10864 -18.36094 -18.09456 -17.91480 -16.71817 -16.50032 -16.39545 -16.09899 -15.82840 -15.52138 -15.22824 -14.58119 -14.48270 -14.44830 -14.34757 -14.11559 -13.97379 -13.62716 -13.30141 -13.07044 -12.78873 -12.72061 -12.64071 -12.57405 -12.14290 -12.06519 -11.80043 -11.49019 -11.38751 -11.25452 -10.99979 -10.86332 -10.75597 -9.24871 -9.12458 -8.67041 -8.56752 -8.11119 -6.08978 -0.42132 0.09838 1.03778 1.11373 1.30916 1.39968 1.52189 1.53546 2.01455 2.25757 2.39571 2.82182 2.90241 3.18246 3.67049 3.83517 4.00690 4.10730 4.14281 4.21379 4.32883 4.37706 4.44404 4.44547 4.50495 4.63985 4.69141 4.70293 4.78625 4.87809 5.02000 5.10403 5.16203 5.24695 5.32593 5.39844 5.44950 5.60334 5.64806 5.67088 5.75381 5.86324 5.99486 6.09567 6.28059 6.35815 6.45730 6.63523 6.91679 6.99105 7.22965 7.27803 8.49098 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003740 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.625729 B = 7485.296551 C = 7700.104967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.118 3.882 4 C -0.210 4.210 5 C -0.034 4.034 6 C -0.123 4.123 7 C -0.108 4.108 8 C -0.128 4.128 9 C -0.108 4.108 10 C -0.087 4.087 11 C -0.090 4.090 12 C 0.129 3.871 13 N -0.693 5.693 14 C 0.121 3.879 15 C -0.169 4.169 16 C -0.192 4.192 17 C -0.155 4.155 18 C -0.156 4.156 19 C 0.040 3.960 20 C -0.493 4.493 21 H 0.070 0.930 22 C 0.036 3.964 23 N -0.839 5.839 24 Si 0.975 3.025 25 H -0.261 1.261 26 H -0.269 1.269 27 H -0.270 1.270 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 15.206 3.969 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.070 3.930 4 C -0.229 4.229 5 C -0.034 4.034 6 C -0.141 4.141 7 C -0.125 4.125 8 C -0.146 4.146 9 C -0.126 4.126 10 C -0.088 4.088 11 C -0.110 4.110 12 C 0.035 3.965 13 N -0.323 5.323 14 C 0.022 3.978 15 C -0.192 4.192 16 C -0.212 4.212 17 C -0.174 4.174 18 C -0.177 4.177 19 C 0.036 3.964 20 C -0.524 4.524 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.467 5.467 24 Si 0.797 3.203 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.195 1.195 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.238 0.762 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.516 14.996 3.826 19.291 hybrid contribution 0.547 -1.018 0.669 1.335 sum -10.969 13.978 4.495 18.327 Atomic orbital electron populations 1.23324 0.76977 1.05055 1.02302 1.86235 1.23018 1.26966 1.88000 1.19431 0.91909 0.85291 0.96324 1.21098 1.00745 0.90488 1.10556 1.18070 0.92364 0.94028 0.98948 1.21230 1.00630 0.91025 1.01217 1.21243 0.94787 0.98539 0.97957 1.21163 0.94359 0.98943 1.00118 1.21234 1.00755 0.91163 0.99445 1.18131 0.93050 0.93699 1.03937 1.21615 1.00143 0.90464 0.98739 1.17167 0.87482 0.87206 1.04659 1.41089 1.58617 1.23946 1.08655 1.18000 1.02221 0.91666 0.85924 1.20180 1.06733 1.00147 0.92120 1.20472 1.06669 0.97171 0.96868 1.20500 1.02402 0.97330 0.97188 1.20731 1.04140 1.00013 0.92834 1.17511 0.94398 0.89939 0.94581 1.19325 1.11458 1.27820 0.93795 0.91147 1.26536 0.94685 0.96389 1.00049 1.69918 1.12673 1.32878 1.31257 0.85269 0.78547 0.78197 0.78294 1.18442 1.19439 1.19481 0.90979 0.91653 0.87475 0.82580 0.83463 0.82943 0.83358 0.84625 0.84862 0.76240 0.88842 0.86955 0.87770 0.88595 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.80 113.37 1.11 1.52 16 2 O -0.33 -11.79 10.21 -92.78 -0.95 -12.73 16 3 C 0.12 4.10 6.41 22.38 0.14 4.24 16 4 C -0.21 -5.79 8.72 22.39 0.20 -5.60 16 5 C -0.03 -0.90 5.74 -21.27 -0.12 -1.02 16 6 C -0.12 -2.43 9.76 22.34 0.22 -2.21 16 7 C -0.11 -1.78 9.95 22.05 0.22 -1.56 16 8 C -0.13 -2.30 9.95 22.04 0.22 -2.08 16 9 C -0.11 -2.49 9.76 22.34 0.22 -2.27 16 10 C -0.09 -2.52 5.74 -21.28 -0.12 -2.64 16 11 C -0.09 -3.03 9.71 22.69 0.22 -2.81 16 12 C 0.13 4.93 4.41 38.33 0.17 5.09 16 13 N -0.69 -30.86 4.99 -179.14 -0.89 -31.76 16 14 C 0.12 6.10 6.65 39.03 0.26 6.36 16 15 C -0.17 -8.14 9.24 22.38 0.21 -7.93 16 16 C -0.19 -9.02 10.03 22.41 0.22 -8.79 16 17 C -0.15 -7.67 9.97 22.02 0.22 -7.45 16 18 C -0.16 -8.66 8.60 22.46 0.19 -8.46 16 19 C 0.04 2.23 5.54 -21.17 -0.12 2.11 16 20 C -0.49 -26.92 8.39 23.35 0.20 -26.72 16 21 H 0.07 3.72 6.87 -2.91 -0.02 3.70 16 22 C 0.04 1.86 5.16 85.24 0.44 2.30 16 23 N -0.84 -45.70 11.10 21.82 0.24 -45.45 16 24 Si 0.97 39.91 29.59 68.60 2.03 41.94 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 28 H 0.07 1.33 7.64 -2.39 -0.02 1.32 16 29 H 0.06 1.32 7.62 -2.39 -0.02 1.31 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.16 3.28 6.17 -2.91 -0.02 3.26 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.40 17.90 7.15 -92.71 -0.66 17.24 16 38 H 0.09 4.27 6.85 -2.91 -0.02 4.25 16 39 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.10 5.54 6.40 -2.91 -0.02 5.52 16 42 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 Total: -1.00 -67.06 352.31 4.91 -62.14 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: 0.39 Total: 43.78 kcal Atomic # 6 Polarization: -62.01 SS G_CDS: 4.09 Total: -57.92 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -0.65 Total: -77.21 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.95 Total: -12.73 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -67.06 4.91 -62.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249551060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.811 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds