Wall clock time and date at job start Tue Mar 31 2020 12:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35962 * 116.99881 * 2 1 4 4 C 1.38666 * 120.06155 * 359.72768 * 3 2 1 5 5 C 1.38176 * 119.96754 * 179.78965 * 4 3 2 6 6 C 1.50701 * 119.95233 * 180.23212 * 5 4 3 7 7 N 1.46903 * 109.46846 * 264.63101 * 6 5 4 8 8 C 1.46904 * 110.99595 * 75.83338 * 7 6 5 9 9 C 1.50700 * 109.46830 * 189.99398 * 8 7 6 10 10 H 1.07999 * 120.00410 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99941 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00295 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99964 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47176 * 89.99898 * 13 11 9 15 15 H 1.48501 * 109.46989 * 209.99627 * 13 11 9 16 16 H 1.48503 * 109.46978 * 329.99576 * 13 11 9 17 17 C 1.46902 * 111.00042 * 199.78714 * 7 6 5 18 18 C 1.50694 * 109.46926 * 75.59121 * 17 7 6 19 19 C 1.34513 * 125.78991 * 84.71911 * 18 17 7 20 20 C 1.41385 * 106.84221 * 179.88763 * 19 18 17 21 21 C 1.34514 * 106.84106 * 0.37375 * 20 19 18 22 22 O 1.34304 * 108.42057 * 359.76841 * 21 20 19 23 23 C 1.38267 * 120.09790 * 0.48251 * 5 4 3 24 24 C 1.38258 * 120.12163 * 359.75131 * 23 5 4 25 25 C 1.38330 * 120.03337 * 0.02562 * 24 23 5 26 26 F 1.35101 * 120.05016 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47036 * 59.99634 * 1 2 3 29 29 H 1.09000 * 109.47112 * 299.99766 * 1 2 3 30 30 H 1.07994 * 120.00935 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.46750 * 24.63211 * 6 5 4 32 32 H 1.09001 * 109.47113 * 144.63329 * 6 5 4 33 33 H 1.08989 * 109.47471 * 309.99683 * 8 7 6 34 34 H 1.09006 * 109.46591 * 70.00142 * 8 7 6 35 35 H 0.97001 * 120.00893 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47285 * 195.59617 * 17 7 6 37 37 H 1.09006 * 109.46697 * 315.59266 * 17 7 6 38 38 H 1.08003 * 126.57701 * 0.02562 * 19 18 17 39 39 H 1.07998 * 126.57475 * 180.16730 * 20 19 18 40 40 H 1.07997 * 125.78815 * 179.75480 * 21 20 19 41 41 H 1.07998 * 119.93769 * 179.76693 * 23 5 4 42 42 H 1.08001 * 119.98347 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3752 -0.0057 5 6 1.9215 3.6053 -0.0013 6 6 1.1017 4.8698 -0.0022 7 7 0.9492 5.3535 -1.3809 8 6 -0.0345 4.5471 -2.1158 9 6 0.0128 4.9074 -3.5784 10 1 0.7046 5.6597 -3.9272 11 6 -0.8266 4.2757 -4.4714 12 7 -0.7850 4.5897 -5.7478 13 14 -2.0228 2.9739 -3.8683 14 1 -3.3086 3.6172 -3.4969 15 1 -2.2594 1.9812 -4.9472 16 1 -1.4512 2.2882 -2.6815 17 6 0.5850 6.7765 -1.4024 18 6 1.7991 7.6105 -1.0842 19 6 2.7330 8.0091 -1.9666 20 6 3.6827 8.7669 -1.2436 21 6 3.2769 8.7791 0.0388 22 8 2.1355 8.0771 0.1295 23 6 3.3023 3.6778 -0.0013 24 6 4.0579 2.5200 -0.0005 25 6 3.4333 1.2857 -0.0002 26 9 4.1713 0.1541 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 0.2137 2.3200 -0.0097 31 1 0.1187 4.6658 0.4221 32 1 1.6050 5.6296 0.5958 33 1 0.1991 3.4895 -1.9944 34 1 -1.0323 4.7461 -1.7247 35 1 -1.3752 4.1450 -6.3762 36 1 0.2115 7.0411 -2.3916 37 1 -0.1899 6.9644 -0.6592 38 1 2.7522 7.7936 -3.0247 39 1 4.5664 9.2417 -1.6436 40 1 3.7832 9.2699 0.8568 41 1 3.7914 4.6407 -0.0016 42 1 5.1362 2.5792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253963713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:25 Heat of formation + Delta-G solvation = -28.492656 kcal Electronic energy + Delta-G solvation = -26925.982190 eV Core-core repulsion = 22981.222058 eV Total energy + Delta-G solvation = -3944.760132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.58794 -42.20000 -39.96137 -37.94852 -36.46082 -32.69100 -32.65160 -31.51083 -30.15879 -29.98191 -28.08895 -27.14696 -25.74376 -23.81074 -22.42799 -21.66847 -21.35407 -20.59073 -19.79692 -17.90332 -17.10831 -16.98625 -16.93212 -16.54091 -16.02527 -15.84785 -14.91591 -14.89861 -14.75174 -14.56314 -14.36034 -14.16485 -13.90768 -13.66463 -12.92067 -12.65725 -12.46811 -12.44592 -12.34901 -12.17790 -11.96872 -11.87644 -11.58718 -11.37776 -11.22297 -10.99069 -10.88394 -10.77718 -10.42972 -9.94148 -9.57329 -9.40920 -8.71635 -8.65036 -8.14836 -7.96771 -7.63264 -6.14361 -4.12424 1.27219 1.45281 2.05568 2.98449 3.18389 3.21739 3.24112 3.27586 3.32284 3.70557 4.31831 4.40147 4.70872 4.86096 4.93197 5.07725 5.13705 5.17892 5.20453 5.26177 5.34419 5.38210 5.38769 5.52042 5.55543 5.69254 5.79025 5.88765 6.11201 6.13203 6.16669 6.20902 6.35619 6.36951 6.47883 6.64873 6.72166 6.74653 6.81257 6.87685 7.37010 7.42789 7.52447 7.70088 7.81281 8.52234 8.93641 9.46435 10.98493 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.006099 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.035713 B = 4589.951915 C = 7193.272405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.093 3.907 4 C -0.169 4.169 5 C -0.029 4.029 6 C 0.085 3.915 7 N -0.515 5.515 8 C 0.161 3.839 9 C -0.513 4.513 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.895 5.895 13 Si 0.872 3.128 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.269 1.269 17 C 0.137 3.863 18 C 0.007 3.993 19 C -0.193 4.193 20 C -0.212 4.212 21 C -0.060 4.060 22 O -0.184 6.184 23 C -0.102 4.102 24 C -0.118 4.118 25 C 0.060 3.940 26 F -0.139 7.139 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.134 0.866 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.036 0.964 34 H -0.014 1.014 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.040 0.960 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.195 0.805 41 H 0.132 0.868 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 0.511 14.348 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.047 3.953 4 C -0.189 4.189 5 C -0.030 4.030 6 C -0.042 4.042 7 N -0.239 5.239 8 C 0.035 3.965 9 C -0.551 4.551 10 H 0.101 0.899 11 C -0.130 4.130 12 N -0.534 5.534 13 Si 0.699 3.301 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.010 3.990 18 C -0.043 4.043 19 C -0.213 4.213 20 C -0.231 4.231 21 C -0.128 4.128 22 O -0.081 6.081 23 C -0.121 4.121 24 C -0.137 4.137 25 C 0.040 3.960 26 F -0.117 7.117 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.004 0.996 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.058 0.942 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.211 0.789 41 H 0.150 0.850 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.477 0.120 14.178 15.199 hybrid contribution -1.305 -0.659 0.276 1.487 sum 4.172 -0.539 14.453 15.053 Atomic orbital electron populations 1.23121 0.78066 1.03986 1.01862 1.86084 1.21620 1.25965 1.88969 1.18917 0.90756 0.85436 1.00196 1.21061 1.00190 0.91109 1.06500 1.19623 0.93916 0.93923 0.95574 1.21121 0.97404 0.93771 0.91938 1.61870 1.50327 1.01011 1.10702 1.20289 0.87624 0.93717 0.94838 1.20991 1.21362 1.23536 0.89248 0.89866 1.24867 0.96895 0.96504 0.94758 1.69872 1.38903 1.42621 1.01976 0.86924 0.81893 0.82429 0.78835 1.20247 1.21034 1.19392 1.20578 0.88552 0.86582 1.03283 1.22693 0.99840 1.00168 0.81619 1.21616 0.95468 1.02814 1.01392 1.21820 1.02357 1.05042 0.93898 1.23827 0.88469 1.01467 0.99020 1.83995 1.36423 1.54622 1.33052 1.20742 0.92916 0.97852 1.00594 1.20932 1.00734 0.90163 1.01855 1.16917 0.85832 0.82890 1.10373 1.91459 1.76445 1.49324 1.94520 0.88130 0.92070 0.92590 0.84842 0.94220 0.90183 0.94561 0.99613 0.92544 0.85765 0.94158 0.83319 0.84039 0.78866 0.84974 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.98 10.36 -19.62 -0.20 -5.18 16 3 C 0.09 1.54 6.69 -39.17 -0.26 1.27 16 4 C -0.17 -2.74 7.38 -39.45 -0.29 -3.03 16 5 C -0.03 -0.48 5.04 -104.63 -0.53 -1.00 16 6 C 0.09 1.38 4.94 -4.97 -0.02 1.36 16 7 N -0.52 -9.89 4.33 -238.96 -1.04 -10.93 16 8 C 0.16 3.59 3.61 -4.97 -0.02 3.57 16 9 C -0.51 -13.65 8.79 -34.44 -0.30 -13.95 16 10 H 0.08 2.41 7.55 -52.49 -0.40 2.01 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 13 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 17 C 0.14 2.44 5.33 -4.98 -0.03 2.42 16 18 C 0.01 0.12 6.16 -35.63 -0.22 -0.10 16 19 C -0.19 -3.14 10.81 -39.70 -0.43 -3.57 16 20 C -0.21 -2.86 10.91 -39.70 -0.43 -3.29 16 21 C -0.06 -0.75 12.09 29.42 0.36 -0.39 16 22 O -0.18 -2.78 10.17 5.68 0.06 -2.72 16 23 C -0.10 -1.53 9.72 -39.56 -0.38 -1.91 16 24 C -0.12 -1.70 10.02 -39.54 -0.40 -2.09 16 25 C 0.06 0.97 7.31 -39.30 -0.29 0.68 16 26 F -0.14 -2.30 17.11 2.25 0.04 -2.26 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.82 7.65 -51.93 -0.40 0.42 16 29 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 30 H 0.13 2.03 6.22 -52.49 -0.33 1.71 16 31 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.08 1.21 6.87 -51.93 -0.36 0.85 16 33 H 0.04 0.84 5.37 -51.94 -0.28 0.56 16 34 H -0.01 -0.30 7.55 -51.93 -0.39 -0.69 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 2.44 6.58 -51.93 -0.34 2.10 16 37 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 38 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.19 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.73 356.35 -7.44 -38.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.42 Total: 4.28 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.35 Total: -16.87 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.26 Total: -36.56 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.15 Total: -7.90 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.73 -7.44 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253963713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.672 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds