Wall clock time and date at job start Tue Mar 31 2020 12:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35962 * 116.99881 * 2 1 4 4 C 1.38666 * 120.06155 * 359.72768 * 3 2 1 5 5 C 1.38176 * 119.96754 * 179.78965 * 4 3 2 6 6 C 1.50701 * 119.95233 * 180.23212 * 5 4 3 7 7 N 1.46903 * 109.46846 * 264.63101 * 6 5 4 8 8 C 1.46904 * 110.99595 * 75.83338 * 7 6 5 9 9 C 1.50700 * 109.46830 * 189.99398 * 8 7 6 10 10 H 1.07999 * 120.00410 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99941 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00295 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99964 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47176 * 89.99898 * 13 11 9 15 15 H 1.48501 * 109.46989 * 209.99627 * 13 11 9 16 16 H 1.48503 * 109.46978 * 329.99576 * 13 11 9 17 17 C 1.46902 * 111.00042 * 199.78714 * 7 6 5 18 18 C 1.50694 * 109.46926 * 75.59121 * 17 7 6 19 19 C 1.34513 * 125.78991 * 84.71911 * 18 17 7 20 20 C 1.41385 * 106.84221 * 179.88763 * 19 18 17 21 21 C 1.34514 * 106.84106 * 0.37375 * 20 19 18 22 22 O 1.34304 * 108.42057 * 359.76841 * 21 20 19 23 23 C 1.38267 * 120.09790 * 0.48251 * 5 4 3 24 24 C 1.38258 * 120.12163 * 359.75131 * 23 5 4 25 25 C 1.38330 * 120.03337 * 0.02562 * 24 23 5 26 26 F 1.35101 * 120.05016 * 179.97438 * 25 24 23 27 27 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47036 * 59.99634 * 1 2 3 29 29 H 1.09000 * 109.47112 * 299.99766 * 1 2 3 30 30 H 1.07994 * 120.00935 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.46750 * 24.63211 * 6 5 4 32 32 H 1.09001 * 109.47113 * 144.63329 * 6 5 4 33 33 H 1.08989 * 109.47471 * 309.99683 * 8 7 6 34 34 H 1.09006 * 109.46591 * 70.00142 * 8 7 6 35 35 H 0.97001 * 120.00893 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47285 * 195.59617 * 17 7 6 37 37 H 1.09006 * 109.46697 * 315.59266 * 17 7 6 38 38 H 1.08003 * 126.57701 * 0.02562 * 19 18 17 39 39 H 1.07998 * 126.57475 * 180.16730 * 20 19 18 40 40 H 1.07997 * 125.78815 * 179.75480 * 21 20 19 41 41 H 1.07998 * 119.93769 * 179.76693 * 23 5 4 42 42 H 1.08001 * 119.98347 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3752 -0.0057 5 6 1.9215 3.6053 -0.0013 6 6 1.1017 4.8698 -0.0022 7 7 0.9492 5.3535 -1.3809 8 6 -0.0345 4.5471 -2.1158 9 6 0.0128 4.9074 -3.5784 10 1 0.7046 5.6597 -3.9272 11 6 -0.8266 4.2757 -4.4714 12 7 -0.7850 4.5897 -5.7478 13 14 -2.0228 2.9739 -3.8683 14 1 -3.3086 3.6172 -3.4969 15 1 -2.2594 1.9812 -4.9472 16 1 -1.4512 2.2882 -2.6815 17 6 0.5850 6.7765 -1.4024 18 6 1.7991 7.6105 -1.0842 19 6 2.7330 8.0091 -1.9666 20 6 3.6827 8.7669 -1.2436 21 6 3.2769 8.7791 0.0388 22 8 2.1355 8.0771 0.1295 23 6 3.3023 3.6778 -0.0013 24 6 4.0579 2.5200 -0.0005 25 6 3.4333 1.2857 -0.0002 26 9 4.1713 0.1541 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 0.2137 2.3200 -0.0097 31 1 0.1187 4.6658 0.4221 32 1 1.6050 5.6296 0.5958 33 1 0.1991 3.4895 -1.9944 34 1 -1.0323 4.7461 -1.7247 35 1 -1.3752 4.1450 -6.3762 36 1 0.2115 7.0411 -2.3916 37 1 -0.1899 6.9644 -0.6592 38 1 2.7522 7.7936 -3.0247 39 1 4.5664 9.2417 -1.6436 40 1 3.7832 9.2699 0.8568 41 1 3.7914 4.6407 -0.0016 42 1 5.1362 2.5792 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253963713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:24 Heat of formation + Delta-G solvation = -47.093824 kcal Electronic energy + Delta-G solvation = -26926.788798 eV Core-core repulsion = 22981.222058 eV Total energy + Delta-G solvation = -3945.566740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.83139 -43.34905 -41.13559 -39.22429 -37.82431 -34.70190 -33.83451 -32.73896 -31.46971 -31.29976 -29.58042 -28.33840 -26.98144 -25.40848 -23.58359 -23.09163 -22.55589 -21.93535 -21.08264 -19.13756 -18.97792 -18.19342 -18.10765 -17.79761 -17.19851 -17.11995 -16.42932 -16.12291 -16.10065 -16.07548 -15.53663 -15.34082 -15.27501 -15.00261 -14.48603 -14.19327 -13.94866 -13.65495 -13.57572 -13.34378 -13.22841 -13.18647 -13.00452 -12.72635 -12.53823 -12.47407 -12.19915 -12.11493 -11.93619 -11.79773 -11.43619 -10.78339 -10.71729 -9.88893 -9.33103 -9.16897 -9.11157 -8.26644 -6.29358 0.06176 0.26770 0.91419 1.32417 1.34820 1.43922 1.82502 2.15126 2.17934 2.33995 2.49849 3.07406 3.21041 3.37844 3.67149 3.74570 3.90411 4.01033 4.19127 4.23052 4.26634 4.27619 4.27917 4.43669 4.49311 4.56163 4.57976 4.64278 4.71327 4.90237 4.93783 4.96041 5.02002 5.04607 5.18323 5.19607 5.33960 5.51024 5.55981 5.65122 5.72061 5.95307 6.18917 6.23618 6.36971 6.59123 6.77392 7.33544 8.89588 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.006099 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.035713 B = 4589.951915 C = 7193.272405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.082 3.918 4 C -0.177 4.177 5 C -0.042 4.042 6 C 0.091 3.909 7 N -0.529 5.529 8 C 0.173 3.827 9 C -0.512 4.512 10 H 0.042 0.958 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.936 3.064 14 H -0.264 1.264 15 H -0.288 1.288 16 H -0.244 1.244 17 C 0.143 3.857 18 C -0.010 4.010 19 C -0.211 4.211 20 C -0.225 4.225 21 C -0.037 4.037 22 O -0.187 6.187 23 C -0.105 4.105 24 C -0.109 4.109 25 C 0.040 3.960 26 F -0.144 7.144 27 H 0.127 0.873 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.035 0.965 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.165 0.835 40 H 0.243 0.757 41 H 0.144 0.856 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 0.451 17.234 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.036 3.964 4 C -0.196 4.196 5 C -0.043 4.043 6 C -0.036 4.036 7 N -0.253 5.253 8 C 0.047 3.953 9 C -0.551 4.551 10 H 0.060 0.940 11 C -0.187 4.187 12 N -0.587 5.587 13 Si 0.760 3.240 14 H -0.189 1.189 15 H -0.214 1.214 16 H -0.167 1.167 17 C 0.016 3.984 18 C -0.060 4.060 19 C -0.231 4.231 20 C -0.244 4.244 21 C -0.104 4.104 22 O -0.084 6.084 23 C -0.124 4.124 24 C -0.128 4.128 25 C 0.020 3.980 26 F -0.123 7.123 27 H 0.145 0.855 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.183 0.817 40 H 0.259 0.741 41 H 0.162 0.838 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.795 0.069 17.095 18.051 hybrid contribution -1.284 -0.530 -0.617 1.520 sum 4.511 -0.461 16.477 17.090 Atomic orbital electron populations 1.23388 0.76304 1.05926 1.02071 1.86067 1.23529 1.25860 1.88919 1.19107 0.91126 0.85856 1.00303 1.21159 1.00639 0.91039 1.06791 1.19757 0.94546 0.93866 0.96111 1.21134 0.98317 0.94143 0.90048 1.61726 1.49405 1.01398 1.12740 1.19997 0.88889 0.94002 0.92436 1.21234 1.19883 1.22047 0.91893 0.93994 1.25771 0.99098 0.99081 0.94731 1.70040 1.40536 1.44562 1.03590 0.85884 0.79711 0.79454 0.78996 1.18939 1.21371 1.16748 1.20332 0.89896 0.86119 1.02082 1.22277 0.99828 1.01382 0.82506 1.21698 0.96835 1.03801 1.00768 1.22076 1.02824 1.05274 0.94218 1.24754 0.86700 0.99051 0.99902 1.83988 1.37538 1.54945 1.31940 1.20927 0.92668 0.98579 1.00205 1.21214 1.02128 0.89222 1.00231 1.17239 0.86091 0.83353 1.11289 1.91438 1.76520 1.49710 1.94662 0.85468 0.93314 0.90808 0.84121 0.92965 0.88802 0.94676 0.98724 0.92606 0.88954 0.92519 0.85441 0.81726 0.74069 0.83786 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -10.09 10.36 -93.12 -0.96 -11.05 16 3 C 0.08 2.62 6.69 22.53 0.15 2.78 16 4 C -0.18 -5.45 7.38 22.36 0.17 -5.29 16 5 C -0.04 -1.28 5.04 -19.87 -0.10 -1.38 16 6 C 0.09 2.76 4.94 85.56 0.42 3.19 16 7 N -0.53 -20.13 4.33 -909.94 -3.94 -24.07 16 8 C 0.17 7.67 3.61 85.56 0.31 7.98 16 9 C -0.51 -28.16 8.79 25.60 0.22 -27.94 16 10 H 0.04 2.59 7.55 -2.91 -0.02 2.56 16 11 C 0.01 0.60 5.47 84.66 0.46 1.06 16 12 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 13 Si 0.94 42.05 27.47 68.60 1.88 43.93 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 17 C 0.14 5.13 5.33 85.55 0.46 5.59 16 18 C -0.01 -0.32 6.16 24.83 0.15 -0.17 16 19 C -0.21 -6.94 10.81 22.19 0.24 -6.70 16 20 C -0.23 -5.61 10.91 22.19 0.24 -5.36 16 21 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 22 O -0.19 -5.18 10.17 -2.57 -0.03 -5.21 16 23 C -0.11 -2.95 9.72 22.28 0.22 -2.73 16 24 C -0.11 -2.94 10.02 22.30 0.22 -2.72 16 25 C 0.04 1.26 7.31 22.45 0.16 1.42 16 26 F -0.14 -4.66 17.11 44.97 0.77 -3.89 16 27 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.21 7.65 -2.39 -0.02 1.19 16 29 H 0.07 1.37 7.67 -2.39 -0.02 1.35 16 30 H 0.14 4.01 6.22 -2.91 -0.02 3.99 16 31 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 32 H 0.09 2.60 6.87 -2.39 -0.02 2.58 16 33 H 0.04 1.58 5.37 -2.39 -0.01 1.57 16 34 H 0.00 -0.21 7.55 -2.38 -0.02 -0.23 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.09 3.86 6.58 -2.39 -0.02 3.85 16 37 H 0.06 1.80 8.00 -2.38 -0.02 1.78 16 38 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 42 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.07 356.35 4.25 -64.82 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.98 Total: 21.92 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 5.25 Total: -28.75 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.65 Total: -81.77 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.99 Total: -16.26 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -69.07 4.25 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253963713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.729 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds