Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00343 * 2 1 4 4 H 1.08996 * 110.43688 * 54.29454 * 3 2 1 5 5 C 1.54270 * 110.48555 * 291.75849 * 3 2 1 6 6 C 1.53877 * 106.59835 * 217.57828 * 5 3 2 7 7 C 1.54260 * 106.59877 * 359.97438 * 6 5 3 8 8 H 1.08995 * 110.48771 * 264.93112 * 7 6 5 9 9 N 1.46504 * 110.48439 * 142.42133 * 7 6 5 10 10 C 1.46504 * 120.00001 * 301.44929 * 9 7 6 11 11 C 1.34775 * 120.00219 * 121.45805 * 9 7 6 12 12 O 1.21614 * 119.99614 * 5.45903 * 11 9 7 13 13 C 1.47427 * 120.00322 * 185.46961 * 11 9 7 14 14 C 1.39228 * 120.28257 * 46.86122 * 13 11 9 15 15 C 1.38219 * 120.08863 * 180.02562 * 14 13 11 16 16 C 1.38829 * 120.68126 * 0.02606 * 15 14 13 17 17 C 1.37601 * 120.56662 * 359.97438 * 16 15 14 18 18 C 1.40707 * 119.88099 * 359.67877 * 17 16 15 19 19 C 1.40888 * 120.32964 * 180.29677 * 18 17 16 20 20 H 1.07997 * 120.00506 * 149.23468 * 19 18 17 21 21 C 1.40280 * 119.99748 * 329.23644 * 19 18 17 22 22 N 1.30628 * 119.99939 * 159.85818 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 339.86259 * 21 19 18 24 24 H 1.48496 * 109.47389 * 88.60410 * 23 21 19 25 25 H 1.48506 * 109.46956 * 208.60878 * 23 21 19 26 26 H 1.48499 * 109.46942 * 328.60281 * 23 21 19 27 27 C 1.54894 * 110.48792 * 176.84374 * 3 2 1 28 28 H 1.08999 * 109.46709 * 300.00258 * 1 2 3 29 29 H 1.08997 * 109.46813 * 59.99983 * 1 2 3 30 30 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.09005 * 110.02997 * 336.86427 * 5 3 2 32 32 H 1.09001 * 110.03429 * 98.29310 * 5 3 2 33 33 H 1.08997 * 110.03100 * 119.28614 * 6 5 3 34 34 H 1.09000 * 110.03234 * 240.71197 * 6 5 3 35 35 H 1.09001 * 109.46256 * 95.31216 * 10 9 7 36 36 H 1.08997 * 109.47257 * 215.31049 * 10 9 7 37 37 H 1.09000 * 109.46882 * 335.32023 * 10 9 7 38 38 H 1.07994 * 119.95484 * 0.03054 * 14 13 11 39 39 H 1.08005 * 119.66165 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.71905 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.05518 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00397 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.74858 * 275.06265 * 27 3 2 44 44 H 1.08992 * 110.75494 * 38.43409 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7270 2.2724 0.8294 5 6 1.8217 2.4140 -1.3422 6 6 2.9155 3.4429 -1.6781 7 6 3.9420 3.3862 -0.5281 8 1 3.7245 4.1526 0.2157 9 7 5.3025 3.5484 -1.0468 10 6 5.8225 2.6108 -2.0452 11 6 6.0759 4.5601 -0.6055 12 8 5.6828 5.2782 0.2939 13 6 7.3982 4.7965 -1.2130 14 6 7.5424 4.8097 -2.5977 15 6 8.7841 5.0311 -3.1631 16 6 9.8991 5.2419 -2.3633 17 6 9.7881 5.2346 -0.9918 18 6 8.5341 5.0188 -0.3912 19 6 8.4084 5.0156 1.0120 20 1 7.4883 5.3435 1.4726 21 6 9.4786 4.5866 1.8111 22 7 9.5362 4.9363 3.0683 23 14 10.8214 3.5154 1.0771 24 1 11.8835 4.3784 0.5007 25 1 11.4040 2.6554 2.1384 26 1 10.2441 2.6606 0.0088 27 6 3.7558 1.9697 0.0799 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7714 1.6544 -2.1223 32 1 0.8575 2.9128 -1.2434 33 1 3.3959 3.1826 -2.6212 34 1 2.4821 4.4410 -1.7424 35 1 5.6770 3.0250 -3.0429 36 1 6.8860 2.4475 -1.8712 37 1 5.2911 1.6625 -1.9645 38 1 6.6829 4.6467 -3.2310 39 1 8.8880 5.0403 -4.2381 40 1 10.8620 5.4130 -2.8215 41 1 10.6610 5.3991 -0.3776 42 1 10.2760 4.6393 3.6210 43 1 4.0953 1.9435 1.1153 44 1 4.2757 1.2208 -0.5174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261851680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = -20.171140 kcal Electronic energy + Delta-G solvation = -24851.889500 eV Core-core repulsion = 21473.703392 eV Total energy + Delta-G solvation = -3378.186108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72996 -37.99509 -36.68028 -34.30033 -33.61854 -30.53790 -30.27157 -29.26935 -28.86747 -27.75669 -26.31065 -25.21640 -22.48065 -21.36696 -20.86765 -19.96441 -18.66230 -17.46962 -17.00047 -16.52548 -15.75668 -15.61741 -15.36234 -14.67026 -14.41031 -14.12859 -13.80777 -13.70701 -13.66695 -13.56104 -13.16347 -12.85306 -12.61042 -12.33651 -12.20698 -12.00457 -11.86580 -11.81295 -11.53406 -11.35993 -11.24975 -10.98560 -10.83042 -10.79016 -10.50054 -10.43727 -10.11402 -9.97433 -9.84305 -9.18129 -8.70885 -8.08205 -7.84528 -7.78699 -7.68451 -7.03549 -4.55943 1.51162 2.21549 2.39664 2.60435 3.05397 3.12923 3.24082 3.52924 3.77853 3.90774 4.37844 4.44413 4.61155 4.79581 4.88930 4.91555 5.23007 5.25776 5.32501 5.36475 5.41099 5.42151 5.47117 5.58688 5.70051 5.72269 5.80703 5.90399 5.96754 6.05438 6.06181 6.17468 6.20994 6.30842 6.41819 6.58270 6.78873 7.06729 7.08480 7.27376 7.46022 7.60196 7.77564 8.01024 8.10036 8.37925 8.60834 8.77767 9.14173 9.95749 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.003705 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.014264 B = 7554.999927 C = 8339.249196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.259 6.259 3 C -0.056 4.056 4 H 0.093 0.907 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.145 3.855 8 H 0.106 0.894 9 N -0.617 5.617 10 C 0.085 3.915 11 C 0.585 3.415 12 O -0.540 6.540 13 C -0.248 4.248 14 C -0.040 4.040 15 C -0.258 4.258 16 C -0.063 4.063 17 C -0.237 4.237 18 C 0.124 3.876 19 C -0.430 4.430 20 H 0.115 0.885 21 C 0.084 3.916 22 N -0.786 5.786 23 Si 0.910 3.090 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.247 1.247 27 C -0.111 4.111 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.288 0.712 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.192 -8.595 -8.073 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.031 6.031 3 C -0.185 4.185 4 H 0.111 0.889 5 C -0.155 4.155 6 C -0.172 4.172 7 C 0.039 3.961 8 H 0.124 0.876 9 N -0.351 5.351 10 C -0.058 4.058 11 C 0.378 3.622 12 O -0.417 6.417 13 C -0.252 4.252 14 C -0.059 4.059 15 C -0.277 4.277 16 C -0.081 4.081 17 C -0.256 4.256 18 C 0.120 3.880 19 C -0.457 4.457 20 H 0.133 0.867 21 C -0.137 4.137 22 N -0.408 5.408 23 Si 0.736 3.264 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.170 1.170 27 C -0.151 4.151 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.662 -9.091 -7.256 16.471 hybrid contribution -0.212 0.531 -0.211 0.609 sum -11.875 -8.560 -7.467 16.433 Atomic orbital electron populations 1.23354 0.94757 1.06175 1.04836 1.86925 1.06818 1.11516 1.97861 1.23991 1.00611 0.92897 1.01043 0.88912 1.22493 0.98743 0.98558 0.95688 1.22512 0.95963 0.99154 0.99582 1.21786 0.81942 0.96803 0.95547 0.87591 1.47740 1.13507 1.30140 1.43737 1.21737 1.00625 0.92327 0.91139 1.18446 0.84131 0.78666 0.80960 1.90665 1.73529 1.47621 1.29900 1.19306 0.93344 1.19550 0.93003 1.20755 0.96073 0.95913 0.93153 1.20263 0.93184 1.16730 0.97524 1.20731 0.96900 0.96687 0.93813 1.21181 0.97752 1.12422 0.94287 1.17433 0.89810 0.87584 0.93174 1.19993 1.01611 1.34352 0.89745 0.86693 1.26377 0.97983 0.94784 0.94600 1.69636 1.29939 1.33526 1.07699 0.86396 0.80393 0.80386 0.79273 1.18953 1.21509 1.17040 1.22777 0.91588 0.97872 1.02834 0.90637 0.90568 0.88376 0.90410 0.91612 0.90779 0.91262 0.93279 0.90454 0.91868 0.88397 0.88623 0.88691 0.87539 0.90129 0.90056 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.67 101.05 1.08 0.16 16 2 S -0.26 -2.82 21.64 -107.50 -2.33 -5.15 16 3 C -0.06 -0.61 3.36 -25.07 -0.08 -0.70 16 4 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 5 C -0.11 -1.11 6.30 -25.61 -0.16 -1.28 16 6 C -0.13 -1.54 6.43 -25.61 -0.16 -1.70 16 7 C 0.15 2.16 3.27 -66.07 -0.22 1.95 16 8 H 0.11 1.82 6.98 -51.93 -0.36 1.45 16 9 N -0.62 -10.85 2.87 -173.07 -0.50 -11.35 16 10 C 0.08 1.24 7.78 59.85 0.47 1.70 16 11 C 0.58 13.22 6.79 -12.52 -0.08 13.14 16 12 O -0.54 -14.08 14.35 5.27 0.08 -14.00 16 13 C -0.25 -5.76 4.83 -104.37 -0.50 -6.27 16 14 C -0.04 -0.81 8.06 -39.22 -0.32 -1.12 16 15 C -0.26 -5.06 10.03 -39.37 -0.39 -5.46 16 16 C -0.06 -1.31 10.01 -39.60 -0.40 -1.70 16 17 C -0.24 -5.62 7.35 -38.88 -0.29 -5.91 16 18 C 0.12 3.18 5.08 -106.54 -0.54 2.64 16 19 C -0.43 -11.96 8.85 -37.81 -0.33 -12.29 16 20 H 0.12 3.55 6.13 -52.49 -0.32 3.23 16 21 C 0.08 2.21 5.37 -17.30 -0.09 2.12 16 22 N -0.79 -20.94 13.92 55.56 0.77 -20.17 16 23 Si 0.91 20.32 24.82 -169.99 -4.22 16.10 16 24 H -0.26 -5.66 6.39 56.52 0.36 -5.30 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.25 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.11 -1.47 5.87 -24.53 -0.14 -1.62 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.84 7.05 -51.93 -0.37 0.48 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.63 6.75 -51.93 -0.35 0.28 16 36 H 0.08 1.27 6.89 -51.93 -0.36 0.91 16 37 H 0.06 0.77 6.19 -51.93 -0.32 0.45 16 38 H 0.10 1.69 6.43 -52.49 -0.34 1.35 16 39 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.11 2.51 4.82 -52.49 -0.25 2.25 16 42 H 0.29 6.87 8.29 -40.82 -0.34 6.53 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.11 6.12 -51.93 -0.32 0.79 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -29.67 354.81 -9.40 -39.06 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.37 Total: 6.49 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.18 Total: -16.34 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.28 Total: -31.52 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.22 Total: 16.10 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.33 Total: -5.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.67 -9.40 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261851680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.892 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds