Wall clock time and date at job start Tue Mar 31 2020 12:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00343 * 2 1 4 4 H 1.08996 * 110.43688 * 54.29454 * 3 2 1 5 5 C 1.54270 * 110.48555 * 291.75849 * 3 2 1 6 6 C 1.53877 * 106.59835 * 217.57828 * 5 3 2 7 7 C 1.54260 * 106.59877 * 359.97438 * 6 5 3 8 8 H 1.08995 * 110.48771 * 264.93112 * 7 6 5 9 9 N 1.46504 * 110.48439 * 142.42133 * 7 6 5 10 10 C 1.46504 * 120.00001 * 301.44929 * 9 7 6 11 11 C 1.34775 * 120.00219 * 121.45805 * 9 7 6 12 12 O 1.21614 * 119.99614 * 5.45903 * 11 9 7 13 13 C 1.47427 * 120.00322 * 185.46961 * 11 9 7 14 14 C 1.39228 * 120.28257 * 46.86122 * 13 11 9 15 15 C 1.38219 * 120.08863 * 180.02562 * 14 13 11 16 16 C 1.38829 * 120.68126 * 0.02606 * 15 14 13 17 17 C 1.37601 * 120.56662 * 359.97438 * 16 15 14 18 18 C 1.40707 * 119.88099 * 359.67877 * 17 16 15 19 19 C 1.40888 * 120.32964 * 180.29677 * 18 17 16 20 20 H 1.07997 * 120.00506 * 149.23468 * 19 18 17 21 21 C 1.40280 * 119.99748 * 329.23644 * 19 18 17 22 22 N 1.30628 * 119.99939 * 159.85818 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 339.86259 * 21 19 18 24 24 H 1.48496 * 109.47389 * 88.60410 * 23 21 19 25 25 H 1.48506 * 109.46956 * 208.60878 * 23 21 19 26 26 H 1.48499 * 109.46942 * 328.60281 * 23 21 19 27 27 C 1.54894 * 110.48792 * 176.84374 * 3 2 1 28 28 H 1.08999 * 109.46709 * 300.00258 * 1 2 3 29 29 H 1.08997 * 109.46813 * 59.99983 * 1 2 3 30 30 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.09005 * 110.02997 * 336.86427 * 5 3 2 32 32 H 1.09001 * 110.03429 * 98.29310 * 5 3 2 33 33 H 1.08997 * 110.03100 * 119.28614 * 6 5 3 34 34 H 1.09000 * 110.03234 * 240.71197 * 6 5 3 35 35 H 1.09001 * 109.46256 * 95.31216 * 10 9 7 36 36 H 1.08997 * 109.47257 * 215.31049 * 10 9 7 37 37 H 1.09000 * 109.46882 * 335.32023 * 10 9 7 38 38 H 1.07994 * 119.95484 * 0.03054 * 14 13 11 39 39 H 1.08005 * 119.66165 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.71905 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.05518 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00397 * 179.97438 * 22 21 19 43 43 H 1.08999 * 110.74858 * 275.06265 * 27 3 2 44 44 H 1.08992 * 110.75494 * 38.43409 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7270 2.2724 0.8294 5 6 1.8217 2.4140 -1.3422 6 6 2.9155 3.4429 -1.6781 7 6 3.9420 3.3862 -0.5281 8 1 3.7245 4.1526 0.2157 9 7 5.3025 3.5484 -1.0468 10 6 5.8225 2.6108 -2.0452 11 6 6.0759 4.5601 -0.6055 12 8 5.6828 5.2782 0.2939 13 6 7.3982 4.7965 -1.2130 14 6 7.5424 4.8097 -2.5977 15 6 8.7841 5.0311 -3.1631 16 6 9.8991 5.2419 -2.3633 17 6 9.7881 5.2346 -0.9918 18 6 8.5341 5.0188 -0.3912 19 6 8.4084 5.0156 1.0120 20 1 7.4883 5.3435 1.4726 21 6 9.4786 4.5866 1.8111 22 7 9.5362 4.9363 3.0683 23 14 10.8214 3.5154 1.0771 24 1 11.8835 4.3784 0.5007 25 1 11.4040 2.6554 2.1384 26 1 10.2441 2.6606 0.0088 27 6 3.7558 1.9697 0.0799 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7714 1.6544 -2.1223 32 1 0.8575 2.9128 -1.2434 33 1 3.3959 3.1826 -2.6212 34 1 2.4821 4.4410 -1.7424 35 1 5.6770 3.0250 -3.0429 36 1 6.8860 2.4475 -1.8712 37 1 5.2911 1.6625 -1.9645 38 1 6.6829 4.6467 -3.2310 39 1 8.8880 5.0403 -4.2381 40 1 10.8620 5.4130 -2.8215 41 1 10.6610 5.3991 -0.3776 42 1 10.2760 4.6393 3.6210 43 1 4.0953 1.9435 1.1153 44 1 4.2757 1.2208 -0.5174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261851680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:39 Heat of formation + Delta-G solvation = -37.009377 kcal Electronic energy + Delta-G solvation = -24852.619661 eV Core-core repulsion = 21473.703392 eV Total energy + Delta-G solvation = -3378.916269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25909 -39.43296 -38.29862 -35.86846 -35.36764 -32.36071 -31.87024 -30.02820 -29.81883 -28.85362 -27.77273 -26.93608 -24.09110 -23.10763 -21.82797 -21.33352 -20.10435 -19.34994 -18.38820 -17.87434 -17.26510 -16.75340 -16.71611 -16.27816 -15.87609 -15.58420 -15.25380 -14.93521 -14.66923 -14.45826 -14.33140 -14.23223 -14.05252 -13.93186 -13.69831 -13.43775 -13.19903 -13.10046 -12.73334 -12.67187 -12.50886 -12.45710 -12.19148 -12.14568 -11.99881 -11.90128 -11.64058 -11.52036 -10.99173 -10.77869 -10.48966 -9.58411 -9.50375 -9.44074 -8.94400 -8.68446 -6.54672 0.46898 0.71061 0.84044 1.23015 1.36814 1.45869 1.64541 1.96414 2.09093 2.23450 2.58818 3.40741 3.48289 3.60231 3.78177 4.07459 4.19483 4.24602 4.27869 4.34098 4.35696 4.38623 4.40963 4.45675 4.46815 4.54432 4.71877 4.73994 4.75618 4.87449 4.89700 4.92175 5.01175 5.02893 5.09682 5.21184 5.26482 5.28232 5.47484 5.71872 5.76455 5.89308 5.99502 6.22457 6.39061 6.50544 6.76091 6.78898 7.44728 8.12703 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.003705 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.014264 B = 7554.999927 C = 8339.249196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.298 6.298 3 C -0.047 4.047 4 H 0.092 0.908 5 C -0.103 4.103 6 C -0.121 4.121 7 C 0.136 3.864 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.080 3.920 11 C 0.574 3.426 12 O -0.593 6.593 13 C -0.260 4.260 14 C -0.038 4.038 15 C -0.231 4.231 16 C -0.061 4.061 17 C -0.256 4.256 18 C 0.105 3.895 19 C -0.480 4.480 20 H 0.060 0.940 21 C 0.045 3.955 22 N -0.839 5.839 23 Si 0.969 3.031 24 H -0.245 1.245 25 H -0.275 1.275 26 H -0.252 1.252 27 C -0.106 4.106 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.296 0.704 43 H 0.054 0.946 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -10.359 -12.880 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.070 6.070 3 C -0.176 4.176 4 H 0.110 0.890 5 C -0.142 4.142 6 C -0.161 4.161 7 C 0.031 3.969 8 H 0.090 0.910 9 N -0.340 5.340 10 C -0.062 4.062 11 C 0.367 3.633 12 O -0.474 6.474 13 C -0.264 4.264 14 C -0.056 4.056 15 C -0.250 4.250 16 C -0.079 4.079 17 C -0.275 4.275 18 C 0.102 3.898 19 C -0.508 4.508 20 H 0.078 0.922 21 C -0.171 4.171 22 N -0.464 5.464 23 Si 0.791 3.209 24 H -0.170 1.170 25 H -0.201 1.201 26 H -0.175 1.175 27 C -0.146 4.146 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.250 -10.885 -12.101 20.371 hybrid contribution -0.208 1.078 1.037 1.510 sum -12.458 -9.807 -11.064 19.334 Atomic orbital electron populations 1.23428 0.91180 1.07387 1.05909 1.87056 1.10751 1.11252 1.97989 1.23852 0.98369 0.93316 1.02104 0.89011 1.22451 0.98741 0.98144 0.94891 1.22430 0.95327 1.00101 0.98204 1.21945 0.81550 0.96761 0.96652 0.91024 1.47749 1.13954 1.28881 1.43453 1.21958 0.99821 0.92995 0.91396 1.18636 0.84646 0.79461 0.80605 1.90640 1.74659 1.50051 1.32079 1.19680 0.92959 1.19114 0.94692 1.21142 0.98023 0.94673 0.91778 1.20888 0.92056 1.12249 0.99828 1.21208 0.99326 0.94893 0.92509 1.21277 0.96734 1.13548 0.95981 1.17668 0.91836 0.87793 0.92535 1.19767 1.00647 1.38883 0.91489 0.92179 1.27126 0.99835 0.95368 0.94755 1.69680 1.31667 1.35957 1.09109 0.85503 0.77998 0.78810 0.78634 1.16994 1.20129 1.17543 1.22652 0.93981 0.96790 1.01162 0.90030 0.89031 0.87077 0.89042 0.89605 0.89502 0.91146 0.90328 0.92241 0.89217 0.84789 0.83949 0.84771 0.87982 0.89348 0.92668 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.67 113.37 1.21 -0.14 16 2 S -0.30 -6.00 21.64 -56.49 -1.22 -7.22 16 3 C -0.05 -0.98 3.36 31.67 0.11 -0.87 16 4 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 5 C -0.10 -1.69 6.30 31.32 0.20 -1.49 16 6 C -0.12 -2.56 6.43 31.32 0.20 -2.36 16 7 C 0.14 4.14 3.27 46.19 0.15 4.29 16 8 H 0.07 2.68 6.98 -2.39 -0.02 2.66 16 9 N -0.61 -21.53 2.87 -819.72 -2.35 -23.88 16 10 C 0.08 2.15 7.78 127.77 0.99 3.14 16 11 C 0.57 27.17 6.79 86.66 0.59 27.76 16 12 O -0.59 -33.78 14.35 -4.07 -0.06 -33.84 16 13 C -0.26 -12.20 4.83 -19.70 -0.10 -12.30 16 14 C -0.04 -1.39 8.06 22.50 0.18 -1.21 16 15 C -0.23 -7.83 10.03 22.41 0.22 -7.61 16 16 C -0.06 -2.30 10.01 22.26 0.22 -2.08 16 17 C -0.26 -11.93 7.35 22.72 0.17 -11.76 16 18 C 0.11 5.57 5.08 -21.11 -0.11 5.46 16 19 C -0.48 -28.96 8.85 23.42 0.21 -28.75 16 20 H 0.06 4.18 6.13 -2.91 -0.02 4.16 16 21 C 0.05 2.53 5.37 85.37 0.46 2.99 16 22 N -0.84 -48.36 13.92 21.88 0.30 -48.06 16 23 Si 0.97 43.04 24.82 68.60 1.70 44.74 16 24 H -0.25 -10.03 6.39 99.48 0.64 -9.39 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.25 -11.17 7.11 99.48 0.71 -10.47 16 27 C -0.11 -2.88 5.87 32.02 0.19 -2.69 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.33 7.80 -2.38 -0.02 1.31 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.65 7.05 -2.39 -0.02 1.63 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.67 6.75 -2.39 -0.02 1.66 16 36 H 0.06 1.84 6.89 -2.39 -0.02 1.82 16 37 H 0.09 1.94 6.19 -2.39 -0.01 1.93 16 38 H 0.13 3.94 6.43 -2.91 -0.02 3.92 16 39 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.10 4.77 4.82 -2.91 -0.01 4.75 16 42 H 0.30 15.12 8.29 -92.71 -0.77 14.35 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.27 6.12 -2.39 -0.01 2.26 16 Total: -1.00 -73.53 354.81 4.20 -69.33 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.93 Total: 26.55 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.89 Total: -27.61 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -2.04 Total: -71.94 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.06 Total: -33.84 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.70 Total: 44.74 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.22 Total: -7.22 kcal Total: -73.53 4.20 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261851680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.316 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds