Wall clock time and date at job start Tue Mar 31 2020 12:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65607 * 119.99833 * 2 1 4 4 O 1.42092 * 104.28013 * 309.14977 * 3 2 1 5 5 O 1.42104 * 104.27424 * 181.28953 * 3 2 1 6 6 C 1.81403 * 104.44582 * 65.22066 * 3 2 1 7 7 H 1.09000 * 110.88906 * 298.76328 * 6 3 2 8 8 C 1.55155 * 111.03938 * 62.67260 * 6 3 2 9 9 C 1.54331 * 103.02303 * 153.39455 * 8 6 3 10 10 N 1.47026 * 107.26539 * 338.13951 * 9 8 6 11 11 C 1.34772 * 125.64807 * 178.84999 * 10 9 8 12 12 O 1.21591 * 119.99838 * 179.69043 * 11 10 9 13 13 N 1.34773 * 120.00019 * 359.69466 * 11 10 9 14 14 C 1.46508 * 119.99992 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47135 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46928 * 179.97438 * 15 14 13 17 17 C 1.50709 * 109.47113 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99563 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99999 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00368 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47127 * 60.00374 * 21 19 17 23 23 H 1.48498 * 109.47179 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47016 * 300.00430 * 21 19 17 25 25 C 1.47430 * 108.70000 * 358.58380 * 10 9 8 26 26 H 1.08998 * 109.47169 * 184.88225 * 1 2 3 27 27 H 1.08999 * 109.47308 * 304.89287 * 1 2 3 28 28 H 1.09006 * 109.47335 * 64.88886 * 1 2 3 29 29 H 0.96998 * 120.00332 * 180.02562 * 2 1 3 30 30 H 1.09002 * 110.71644 * 271.95553 * 8 6 3 31 31 H 1.09000 * 110.71919 * 35.04254 * 8 6 3 32 32 H 1.08998 * 109.99264 * 218.66113 * 9 8 6 33 33 H 1.08997 * 109.77997 * 97.49512 * 9 8 6 34 34 H 0.96995 * 120.00331 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47346 * 59.99239 * 14 13 11 36 36 H 1.09002 * 109.46783 * 299.99469 * 14 13 11 37 37 H 1.09002 * 109.46953 * 299.99489 * 15 14 13 38 38 H 1.08996 * 109.47522 * 59.99472 * 15 14 13 39 39 H 1.09002 * 109.47018 * 299.99611 * 16 15 14 40 40 H 1.09004 * 109.47187 * 59.99824 * 16 15 14 41 41 H 0.96997 * 120.00548 * 179.97438 * 20 19 17 42 42 H 1.09007 * 110.36155 * 143.19446 * 25 10 9 43 43 H 1.08992 * 110.36651 * 265.40831 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7153 2.1724 -1.0679 5 8 3.6605 1.0493 -0.0310 6 6 1.8816 2.1942 1.5949 7 1 0.8099 2.3770 1.6735 8 6 2.3848 1.3208 2.7745 9 6 2.5901 2.3498 3.9062 10 7 2.7480 3.6679 3.2743 11 6 2.9266 4.8346 3.9249 12 8 3.0518 5.8680 3.2967 13 7 2.9664 4.8557 5.2719 14 6 3.1600 6.1241 5.9792 15 6 3.1660 5.8708 7.4881 16 6 3.3688 7.1953 8.2266 17 6 3.3740 6.9460 9.7129 18 1 3.2460 5.9431 10.0926 19 6 3.5434 7.9980 10.5878 20 7 3.6998 9.2192 10.1254 21 14 3.5506 7.6889 12.4300 22 1 4.6555 6.7572 12.7713 23 1 3.7473 8.9744 13.1469 24 1 2.2542 7.0893 12.8364 25 6 2.6849 3.5011 1.8108 26 1 -0.3633 -1.0239 0.0875 27 1 -0.3634 0.5879 0.8429 28 1 -0.3634 0.4361 -0.9306 29 1 1.9500 -0.8400 -0.0004 30 1 1.6346 0.5811 3.0540 31 1 3.3270 0.8353 2.5202 32 1 3.4853 2.1026 4.4768 33 1 1.7197 2.3551 4.5623 34 1 2.8662 4.0314 5.7731 35 1 2.3484 6.8072 5.7290 36 1 4.1111 6.5650 5.6807 37 1 2.2147 5.4301 7.7862 38 1 3.9773 5.1875 7.7387 39 1 4.3203 7.6356 7.9284 40 1 2.5576 7.8789 7.9761 41 1 3.8186 9.9595 10.7409 42 1 2.1667 4.3447 1.3549 43 1 3.6884 3.4043 1.3965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319613183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:28 Heat of formation + Delta-G solvation = -104.285491 kcal Electronic energy + Delta-G solvation = -24524.297190 eV Core-core repulsion = 20731.614346 eV Total energy + Delta-G solvation = -3792.682843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36529 -37.99708 -37.56341 -36.47160 -35.58295 -35.39432 -33.40899 -32.26155 -30.89532 -29.68505 -26.77382 -26.56361 -24.38651 -22.76949 -22.37411 -20.65725 -19.92374 -19.79459 -18.49508 -18.21127 -17.53818 -16.75065 -16.47294 -15.86147 -15.81638 -15.37546 -15.13356 -14.51847 -14.44517 -14.24227 -14.19633 -14.01734 -13.44670 -13.33905 -13.25437 -12.68491 -12.56482 -12.48517 -12.29184 -12.23823 -12.14061 -11.82671 -11.73374 -11.67754 -11.20450 -10.90111 -10.74867 -10.63885 -10.23443 -10.13486 -9.88426 -9.47075 -9.15571 -9.08064 -8.62410 -8.38247 -6.02826 -4.06254 -0.33069 2.13375 2.48730 3.13970 3.24906 3.30690 3.35454 3.35814 3.37385 3.69432 3.94318 4.09765 4.25826 4.38849 4.43181 4.59700 4.65280 4.83047 4.97779 5.11871 5.14294 5.16773 5.18193 5.25354 5.32689 5.39442 5.62250 5.77795 5.88662 6.14957 6.33416 6.46747 6.58810 6.76276 6.96843 6.99955 7.61912 7.74768 7.95531 7.96723 8.36185 8.61650 9.00105 9.57822 11.08366 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.036736 B = 0.001986 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.012136 B =14093.218692 C =14473.000185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.120 6.120 3 S 2.626 3.374 4 O -0.947 6.947 5 O -0.948 6.948 6 C -0.618 4.618 7 H 0.149 0.851 8 C -0.103 4.103 9 C 0.104 3.896 10 N -0.636 5.636 11 C 0.719 3.281 12 O -0.585 6.585 13 N -0.736 5.736 14 C 0.134 3.866 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.152 3.848 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.419 0.581 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.097 0.903 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 -23.907 -19.546 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.880 5.880 3 S 2.716 3.284 4 O -0.937 6.937 5 O -0.938 6.938 6 C -0.727 4.727 7 H 0.167 0.833 8 C -0.142 4.142 9 C -0.020 4.020 10 N -0.377 5.377 11 C 0.421 3.579 12 O -0.463 6.463 13 N -0.391 5.391 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.026 3.974 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.254 0.746 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.639 -22.328 -20.573 31.078 hybrid contribution -0.339 -0.919 2.008 2.235 sum -6.978 -23.248 -18.565 30.558 Atomic orbital electron populations 1.21519 0.78513 1.04281 1.02163 1.55352 1.16090 1.24517 1.92052 1.04693 0.73783 0.73950 0.76010 1.93627 1.78754 1.72292 1.49020 1.93630 1.32375 1.81070 1.86735 1.31996 1.11154 1.08192 1.21374 0.83273 1.22431 1.02849 0.96694 0.92220 1.21947 1.02166 0.82240 0.95671 1.47454 1.78425 1.05923 1.05900 1.15494 0.78122 0.82012 0.82273 1.90947 1.57852 1.30819 1.66639 1.45394 1.77617 1.12150 1.03893 1.21572 1.01636 0.83186 0.92540 1.21890 1.00837 1.02187 0.90863 1.19026 0.97561 0.90416 0.94341 1.21152 1.50005 0.93663 0.91341 0.92721 1.25034 0.95286 0.95180 0.98991 1.69954 1.49344 0.99038 1.34871 0.86633 0.78519 0.77397 0.85271 1.20252 1.21269 1.20273 1.21582 0.98844 0.94233 0.82693 0.89814 0.92064 0.91375 0.74644 0.88258 0.88709 0.90542 0.90850 0.77237 0.91808 0.91757 0.92786 0.92743 0.96198 0.96226 0.92842 0.88451 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.18 11.02 59.85 0.66 0.84 16 2 N -1.12 -4.07 6.07 -16.63 -0.10 -4.17 16 3 S 2.63 18.40 4.99 -107.50 -0.54 17.86 16 4 O -0.95 -10.12 17.81 -57.54 -1.02 -11.15 16 5 O -0.95 -9.47 17.62 -57.54 -1.01 -10.49 16 6 C -0.62 -3.63 3.56 -24.58 -0.09 -3.72 16 7 H 0.15 0.58 7.76 -51.93 -0.40 0.18 16 8 C -0.10 -0.47 6.42 -24.89 -0.16 -0.63 16 9 C 0.10 0.74 6.15 -3.06 -0.02 0.72 16 10 N -0.64 -7.32 3.33 -176.23 -0.59 -7.90 16 11 C 0.72 11.36 8.49 -86.93 -0.74 10.62 16 12 O -0.59 -11.74 16.60 5.29 0.09 -11.65 16 13 N -0.74 -10.84 5.52 -65.22 -0.36 -11.20 16 14 C 0.13 2.38 5.67 -4.04 -0.02 2.35 16 15 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 1.50 6.38 -2.53 -0.02 1.49 16 26 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.06 0.04 7.63 -51.93 -0.40 -0.35 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.42 0.85 8.92 -34.47 -0.31 0.55 16 30 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.40 7.64 -51.93 -0.40 0.01 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 4.62 7.46 -40.82 -0.30 4.32 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 1.02 8.04 -51.93 -0.42 0.61 16 43 H 0.08 0.73 8.03 -51.93 -0.42 0.32 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -38.91 369.66 -10.16 -49.06 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.83 Total: -2.65 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.07 Total: -3.62 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.31 Total: -49.27 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.95 Total: -33.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 18.40 SS G_CDS: -0.54 Total: 17.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.91 -10.16 -49.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319613183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.221 kcal (2) G-P(sol) polarization free energy of solvation -38.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds