Wall clock time and date at job start Tue Mar 31 2020 12:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99846 * 2 1 4 4 H 1.08998 * 110.43814 * 52.46150 * 3 2 1 5 5 C 1.54888 * 110.48976 * 289.77154 * 3 2 1 6 6 C 1.54878 * 102.75242 * 203.38076 * 5 3 2 7 7 C 1.54263 * 104.19724 * 37.94297 * 6 5 3 8 8 H 1.09000 * 110.03339 * 95.67504 * 7 6 5 9 9 N 1.46497 * 110.07789 * 217.08253 * 7 6 5 10 10 C 1.46503 * 119.99690 * 57.87783 * 9 7 6 11 11 C 1.34780 * 120.00409 * 237.88410 * 9 7 6 12 12 O 1.21583 * 119.99417 * 355.46918 * 11 9 7 13 13 C 1.47634 * 119.99953 * 175.47687 * 11 9 7 14 14 C 1.40020 * 119.89369 * 221.70304 * 13 11 9 15 15 C 1.36316 * 120.10934 * 179.75996 * 14 13 11 16 16 C 1.40897 * 119.88806 * 0.51592 * 15 14 13 17 17 C 1.41109 * 120.10095 * 179.71931 * 16 15 14 18 18 H 1.07992 * 120.00109 * 209.15509 * 17 16 15 19 19 C 1.40228 * 119.99751 * 29.15597 * 17 16 15 20 20 N 1.30645 * 120.00294 * 10.54905 * 19 17 16 21 21 Si 1.86810 * 119.99651 * 190.54595 * 19 17 16 22 22 H 1.48504 * 109.46690 * 60.00298 * 21 19 17 23 23 H 1.48498 * 109.47029 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46961 * 300.00350 * 21 19 17 25 25 C 1.40884 * 119.79142 * 359.73600 * 16 15 14 26 26 C 1.36309 * 119.89750 * 0.02562 * 25 16 15 27 27 C 1.53881 * 106.59903 * 336.39129 * 7 6 5 28 28 H 1.08992 * 109.47268 * 300.00005 * 1 2 3 29 29 H 1.09005 * 109.46948 * 60.00320 * 1 2 3 30 30 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09007 * 110.75377 * 321.70107 * 5 3 2 32 32 H 1.09003 * 110.75517 * 85.06149 * 5 3 2 33 33 H 1.09005 * 110.48842 * 279.26541 * 6 5 3 34 34 H 1.09001 * 110.48761 * 156.62064 * 6 5 3 35 35 H 1.09005 * 109.46966 * 95.25477 * 10 9 7 36 36 H 1.09002 * 109.47454 * 215.25160 * 10 9 7 37 37 H 1.08993 * 109.47482 * 335.25739 * 10 9 7 38 38 H 1.08000 * 119.94391 * 0.02578 * 14 13 11 39 39 H 1.07991 * 120.05790 * 180.27838 * 15 14 13 40 40 H 0.97006 * 119.99746 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.04667 * 180.02562 * 25 16 15 42 42 H 1.08000 * 119.94980 * 179.97438 * 26 25 16 43 43 H 1.08999 * 110.03288 * 119.28488 * 27 7 6 44 44 H 1.08994 * 110.03155 * 240.71569 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7012 2.2784 0.8099 5 6 1.8657 2.4062 -1.3654 6 6 2.7889 3.6489 -1.4128 7 6 4.1066 3.1660 -0.7723 8 1 4.8060 2.8534 -1.5476 9 7 4.6969 4.2382 0.0327 10 6 3.9335 4.8339 1.1321 11 6 5.9423 4.6766 -0.2380 12 8 6.6069 4.1278 -1.0956 13 6 6.4995 5.8230 0.5069 14 6 7.2339 6.8045 -0.1698 15 6 7.7463 7.8674 0.5128 16 6 7.5450 7.9718 1.9034 17 6 8.0783 9.0671 2.6154 18 1 8.3524 8.9542 3.6539 19 6 8.2525 10.3021 1.9745 20 7 7.7368 10.5024 0.7910 21 14 9.2219 11.6610 2.8132 22 1 10.6071 11.1930 3.0728 23 1 9.2606 12.8567 1.9335 24 1 8.5691 12.0132 4.0996 25 6 6.8098 6.9790 2.5807 26 6 6.2973 5.9223 1.8888 27 6 3.7462 1.9697 0.1260 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0953 1.7229 -2.1831 32 1 0.8171 2.7027 -1.3913 33 1 2.3594 4.4656 -0.8324 34 1 2.9574 3.9599 -2.4438 35 1 4.2011 4.3434 2.0680 36 1 4.1640 5.8971 1.2003 37 1 2.8674 4.7045 0.9461 38 1 7.3911 6.7214 -1.2351 39 1 8.3087 8.6262 -0.0107 40 1 7.8576 11.3567 0.3476 41 1 6.6527 7.0551 3.6465 42 1 5.7340 5.1605 2.4073 43 1 4.2707 1.0766 -0.2134 44 1 4.0097 2.1873 1.1610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320271009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:49 Heat of formation + Delta-G solvation = -35.184322 kcal Electronic energy + Delta-G solvation = -24121.206736 eV Core-core repulsion = 20742.369607 eV Total energy + Delta-G solvation = -3378.837129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33335 -39.41604 -38.46160 -35.88348 -35.32065 -31.99943 -31.48851 -30.05898 -29.82599 -29.03924 -27.97509 -26.99582 -23.67957 -22.91246 -21.93957 -21.49885 -20.08175 -19.34222 -18.35362 -17.65548 -17.41137 -17.10228 -16.43180 -16.01356 -15.80334 -15.63707 -15.18137 -14.78165 -14.66482 -14.45659 -14.19514 -14.14166 -14.03248 -13.67950 -13.66374 -13.34594 -13.01198 -12.89758 -12.85238 -12.74978 -12.67238 -12.49449 -12.27998 -12.14767 -11.90123 -11.77069 -11.62453 -11.34036 -11.12896 -10.77308 -10.66837 -9.66076 -9.50257 -9.30012 -8.69404 -8.66662 -6.46379 0.53806 0.76144 1.14388 1.39383 1.45431 1.51821 1.67168 1.94812 2.13960 2.19316 2.74372 3.39485 3.48777 3.66276 3.97435 4.03919 4.21855 4.24710 4.33754 4.34684 4.35890 4.38434 4.38818 4.40323 4.44493 4.58840 4.72654 4.78470 4.90092 4.95427 4.97826 5.00751 5.05367 5.07900 5.17823 5.21460 5.27179 5.28778 5.61970 5.69548 5.79268 6.00301 6.03166 6.23550 6.47246 6.59377 6.82056 6.91696 7.31182 8.24933 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.034096 B = 0.002423 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.014023 B =11555.520232 C =11760.829075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.310 6.310 3 C -0.042 4.042 4 H 0.107 0.893 5 C -0.104 4.104 6 C -0.127 4.127 7 C 0.136 3.864 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.074 3.926 11 C 0.573 3.427 12 O -0.602 6.602 13 C -0.275 4.275 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.099 3.901 17 C -0.480 4.480 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.816 5.816 21 Si 0.988 3.012 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.254 1.254 25 C -0.239 4.239 26 C -0.045 4.045 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.292 0.708 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.989 -11.438 0.592 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.082 6.082 3 C -0.171 4.171 4 H 0.125 0.875 5 C -0.143 4.143 6 C -0.167 4.167 7 C 0.032 3.968 8 H 0.094 0.906 9 N -0.335 5.335 10 C -0.068 4.068 11 C 0.366 3.634 12 O -0.486 6.486 13 C -0.279 4.279 14 C -0.079 4.079 15 C -0.210 4.210 16 C 0.096 3.904 17 C -0.509 4.509 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.441 5.441 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.178 1.178 25 C -0.258 4.258 26 C -0.063 4.063 27 C -0.143 4.143 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.060 -12.465 -0.002 19.549 hybrid contribution 0.030 1.716 -0.033 1.717 sum -15.030 -10.748 -0.036 18.478 Atomic orbital electron populations 1.23413 0.91156 1.07273 1.05954 1.87172 1.10838 1.12185 1.97998 1.23941 0.98591 0.92676 1.01880 0.87491 1.22785 1.00322 0.95890 0.95336 1.22731 0.93708 0.98855 1.01362 1.21727 0.95562 0.86488 0.93042 0.90649 1.47833 1.14347 1.37262 1.34077 1.22128 0.97045 0.98973 0.88617 1.18650 0.81101 0.82436 0.81223 1.90624 1.60870 1.59940 1.37125 1.19112 1.14124 0.99714 0.94941 1.20475 0.95835 0.93842 0.97704 1.20951 1.05789 0.98537 0.95765 1.18131 0.87905 0.92058 0.92323 1.20023 1.36928 0.94875 0.99041 0.89434 1.26931 0.94096 1.02392 0.95070 1.69773 1.33766 1.26131 1.14433 0.85152 0.79006 0.75965 0.79060 1.18491 1.19361 1.17840 1.20983 1.06259 0.98967 0.99603 1.20850 0.96768 0.96644 0.92044 1.22230 0.93805 0.97381 1.00930 0.89524 0.89352 0.87408 0.90258 0.88758 0.89623 0.91141 0.91294 0.91414 0.88557 0.89407 0.87764 0.89743 0.86693 0.84785 0.91414 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.72 113.37 1.21 0.11 16 2 S -0.31 -5.50 21.63 -56.49 -1.22 -6.72 16 3 C -0.04 -0.69 3.36 31.67 0.11 -0.58 16 4 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 5 C -0.10 -1.53 6.30 31.88 0.20 -1.33 16 6 C -0.13 -2.50 6.32 31.66 0.20 -2.30 16 7 C 0.14 3.59 3.30 45.72 0.15 3.74 16 8 H 0.08 2.46 6.95 -2.39 -0.02 2.44 16 9 N -0.60 -18.88 2.76 -822.17 -2.27 -21.14 16 10 C 0.07 1.81 7.75 127.77 0.99 2.80 16 11 C 0.57 24.13 7.30 86.72 0.63 24.76 16 12 O -0.60 -29.48 16.30 -3.98 -0.06 -29.54 16 13 C -0.27 -12.43 5.16 -19.93 -0.10 -12.53 16 14 C -0.06 -2.98 9.58 22.25 0.21 -2.76 16 15 C -0.19 -10.15 8.60 22.47 0.19 -9.95 16 16 C 0.10 5.12 5.55 -21.28 -0.12 5.00 16 17 C -0.48 -24.37 9.05 23.46 0.21 -24.16 16 18 H 0.09 4.17 7.87 -2.91 -0.02 4.15 16 19 C 0.03 1.52 5.25 85.35 0.45 1.96 16 20 N -0.82 -41.11 10.84 21.87 0.24 -40.87 16 21 Si 0.99 36.05 29.57 68.60 2.03 38.08 16 22 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 23 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.24 -10.82 9.73 22.47 0.22 -10.60 16 26 C -0.04 -1.83 7.55 22.25 0.17 -1.66 16 27 C -0.10 -2.28 5.88 31.32 0.18 -2.09 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.27 8.05 -2.38 -0.02 1.25 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.55 6.25 -2.38 -0.01 1.54 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.48 6.76 -2.38 -0.02 1.47 16 36 H 0.07 1.97 6.02 -2.39 -0.01 1.96 16 37 H 0.10 1.69 6.40 -2.39 -0.02 1.67 16 38 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.10 5.80 6.22 -2.91 -0.02 5.78 16 40 H 0.29 13.29 8.29 -92.70 -0.77 12.52 16 41 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.13 4.43 5.54 -2.91 -0.02 4.41 16 43 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 44 H 0.08 1.78 7.32 -2.39 -0.02 1.76 16 Total: -1.00 -64.15 362.26 4.63 -59.52 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 1.00 Total: 30.25 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 4.91 Total: -29.58 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -2.03 Total: -62.01 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.06 Total: -29.54 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -1.22 Total: -6.72 kcal Total: -64.15 4.63 -59.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320271009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.338 kcal (2) G-P(sol) polarization free energy of solvation -64.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds