Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47121 * 2 1 4 4 O 1.42099 * 110.54348 * 68.37540 * 3 2 1 5 5 O 1.42102 * 110.54144 * 291.62105 * 3 2 1 6 6 N 1.65602 * 104.45166 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99973 * 64.99400 * 6 3 2 8 8 C 1.53350 * 109.42250 * 265.13009 * 7 6 3 9 9 C 1.53188 * 109.14976 * 178.67348 * 8 7 6 10 10 N 1.46925 * 108.89442 * 54.58200 * 9 8 7 11 11 C 1.34776 * 120.63544 * 126.29468 * 10 9 8 12 12 O 1.21588 * 120.00211 * 174.96212 * 11 10 9 13 13 N 1.34772 * 119.99868 * 354.96390 * 11 10 9 14 14 C 1.46502 * 120.00424 * 185.06863 * 13 11 10 15 15 C 1.50692 * 109.47120 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00777 * 0.02562 * 15 14 13 17 17 C 1.37888 * 119.99673 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99680 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47253 * 90.00140 * 19 17 15 21 21 H 1.48502 * 109.47280 * 210.00174 * 19 17 15 22 22 H 1.48504 * 109.47272 * 330.00031 * 19 17 15 23 23 C 1.46927 * 118.73541 * 306.31796 * 10 9 8 24 24 C 1.53048 * 109.45947 * 145.00026 * 7 6 3 25 25 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47261 * 299.99883 * 1 2 3 27 27 H 1.08996 * 109.46717 * 60.00350 * 1 2 3 28 28 H 1.09000 * 109.47170 * 239.99656 * 2 1 3 29 29 H 1.09008 * 109.46833 * 119.99956 * 2 1 3 30 30 H 0.96997 * 119.99933 * 245.00370 * 6 3 2 31 31 H 1.08998 * 109.45758 * 25.03556 * 7 6 3 32 32 H 1.09005 * 109.68228 * 58.71279 * 8 7 6 33 33 H 1.09002 * 109.47563 * 298.51619 * 8 7 6 34 34 H 1.09000 * 109.59213 * 294.72337 * 9 8 7 35 35 H 1.09003 * 109.58609 * 174.43706 * 9 8 7 36 36 H 0.97004 * 120.00168 * 5.07331 * 13 11 10 37 37 H 1.08998 * 109.47065 * 300.00332 * 14 13 11 38 38 H 1.09000 * 109.46606 * 59.99697 * 14 13 11 39 39 H 0.97002 * 119.99565 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.58513 * 173.39301 * 23 10 9 41 41 H 1.08998 * 109.58967 * 293.67606 * 23 10 9 42 42 H 1.09006 * 109.48873 * 61.43837 * 24 7 6 43 43 H 1.08998 * 109.52350 * 301.36125 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9668 -1.1487 8 6 4.6991 -0.5258 -0.8838 9 6 5.3837 -1.1522 -2.1027 10 7 6.6060 -0.3945 -2.4034 11 6 7.7943 -1.0217 -2.5094 12 8 8.7822 -0.3992 -2.8484 13 7 7.8874 -2.3389 -2.2397 14 6 9.1961 -2.9973 -2.2465 15 6 9.0252 -4.4579 -1.9173 16 1 8.0403 -4.8561 -1.7229 17 6 10.1264 -5.2860 -1.8643 18 7 11.3256 -4.8012 -2.1016 19 14 9.9146 -7.0967 -1.4570 20 1 9.7070 -7.8651 -2.7106 21 1 11.1317 -7.5946 -0.7670 22 1 8.7367 -7.2699 -0.5694 23 6 6.5085 1.0601 -2.5859 24 6 5.8126 1.6651 -1.3626 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 4.2982 1.8766 0.7622 31 1 3.8511 1.0855 -2.0397 32 1 3.7434 -1.0202 -0.7094 33 1 5.3362 -0.6449 -0.0074 34 1 4.7107 -1.1149 -2.9593 35 1 5.6408 -2.1888 -1.8848 36 1 7.0879 -2.8510 -2.0411 37 1 9.6476 -2.8981 -3.2336 38 1 9.8417 -2.5300 -1.5030 39 1 12.1003 -5.3839 -2.0646 40 1 7.5080 1.4839 -2.6844 41 1 5.9293 1.2778 -3.4833 42 1 6.4390 1.5255 -0.4816 43 1 5.6481 2.7299 -1.5271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344004228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = -104.459142 kcal Electronic energy + Delta-G solvation = -25388.750122 eV Core-core repulsion = 21596.059749 eV Total energy + Delta-G solvation = -3792.690374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06049 -37.96393 -37.36210 -36.29605 -34.79530 -34.31225 -33.65017 -32.47553 -31.09931 -30.60437 -27.17750 -24.70546 -24.56849 -23.42450 -22.43589 -21.08322 -19.76216 -19.20107 -18.38044 -17.96692 -16.89572 -16.59691 -16.04332 -15.83821 -15.48493 -15.19836 -14.72380 -14.69547 -14.33980 -14.30568 -13.74939 -13.61322 -13.36257 -13.18270 -12.97485 -12.53542 -12.48160 -12.45204 -12.36276 -12.03208 -11.98782 -11.93078 -11.68408 -11.53431 -11.42161 -10.98438 -10.93171 -10.91172 -10.77343 -10.32222 -9.80329 -9.42624 -9.37336 -8.76655 -8.50505 -7.78019 -6.18280 -4.25081 -0.11952 2.32785 3.09501 3.22034 3.28596 3.30579 3.38659 3.77941 3.83905 4.11875 4.25832 4.30663 4.35188 4.44387 4.64469 4.70042 4.73385 4.92150 4.96703 5.08729 5.12427 5.17912 5.19995 5.27336 5.37608 5.44592 5.59275 5.62257 5.73377 5.84699 5.93841 6.10172 6.60684 6.70027 7.07301 7.46948 7.49564 7.54381 7.81378 7.98807 8.71756 8.85791 9.27450 9.43969 10.91953 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.002773 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.791050 B =10093.418605 C =11096.777556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.610 3.390 4 O -0.961 6.961 5 O -0.955 6.955 6 N -1.114 6.114 7 C 0.147 3.853 8 C -0.160 4.160 9 C 0.114 3.886 10 N -0.640 5.640 11 C 0.697 3.303 12 O -0.596 6.596 13 N -0.729 5.729 14 C 0.266 3.734 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.132 3.868 24 C -0.136 4.136 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.419 0.581 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.385 0.615 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.526 9.947 4.295 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.702 3.298 4 O -0.951 6.951 5 O -0.945 6.945 6 N -0.872 5.872 7 C 0.040 3.960 8 C -0.201 4.201 9 C -0.011 4.011 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.475 6.475 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.008 3.992 24 C -0.176 4.176 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.253 0.747 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.220 0.780 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.126 11.063 3.892 24.163 hybrid contribution -0.046 -2.010 0.740 2.142 sum -21.172 9.054 4.631 23.488 Atomic orbital electron populations 1.21506 0.90422 1.05213 1.03424 1.30641 1.07388 1.26438 1.11955 1.05025 0.73230 0.77247 0.74328 1.93608 1.83226 1.73102 1.45144 1.93613 1.83369 1.71960 1.45555 1.55664 1.25750 1.77513 1.28268 1.20957 0.95358 0.92024 0.87684 1.22694 1.01720 0.95387 1.00257 1.21511 0.86874 0.96230 0.96506 1.47319 1.06364 1.07378 1.76890 1.16056 0.82481 0.82834 0.78754 1.90868 1.35608 1.66151 1.54886 1.45893 1.12658 1.06561 1.73234 1.18987 0.77936 0.90938 0.97634 1.21201 0.93820 0.93153 1.49916 0.92061 1.24944 0.94925 0.99213 0.94915 1.69975 0.98350 1.36027 1.47830 0.86418 0.77726 0.84234 0.78511 1.20464 1.21009 1.19808 1.21324 1.02518 0.79483 0.95901 1.22205 0.94867 1.00255 1.00242 0.89870 0.91011 0.90920 0.84739 0.84677 0.74677 0.88698 0.90609 0.89977 0.91376 0.89480 0.78014 0.95649 0.95834 0.92429 0.88302 0.91784 0.90580 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.92 37.16 0.37 -0.35 16 2 C -0.63 -3.11 5.91 37.16 0.22 -2.89 16 3 S 2.61 20.75 5.44 -107.50 -0.58 20.16 16 4 O -0.96 -10.73 18.08 -57.54 -1.04 -11.77 16 5 O -0.96 -10.74 17.39 -57.54 -1.00 -11.74 16 6 N -1.11 -7.77 5.36 -4.72 -0.03 -7.80 16 7 C 0.15 1.15 2.65 -67.72 -0.18 0.97 16 8 C -0.16 -1.23 5.68 -26.45 -0.15 -1.38 16 9 C 0.11 1.15 6.42 -3.71 -0.02 1.12 16 10 N -0.64 -9.06 2.97 -178.50 -0.53 -9.59 16 11 C 0.70 13.97 8.30 -86.92 -0.72 13.25 16 12 O -0.60 -14.53 15.79 5.29 0.08 -14.45 16 13 N -0.73 -15.17 5.46 -66.42 -0.36 -15.53 16 14 C 0.27 6.99 5.43 -5.20 -0.03 6.96 16 15 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 16 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 19 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 C 0.13 1.57 6.42 -3.71 -0.02 1.55 16 24 C -0.14 -1.24 5.61 -26.61 -0.15 -1.39 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.13 0.47 6.80 -51.92 -0.35 0.12 16 29 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.42 2.50 8.80 -34.47 -0.30 2.20 16 31 H 0.10 0.70 7.48 -51.93 -0.39 0.31 16 32 H 0.08 0.38 5.76 -51.93 -0.30 0.08 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.91 5.56 -51.93 -0.29 0.62 16 36 H 0.38 6.79 5.78 -40.82 -0.24 6.55 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.10 1.39 7.04 -51.92 -0.37 1.02 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -37.28 358.39 -9.87 -47.15 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.42 Total: 3.07 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.10 Total: 4.71 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.18 Total: -57.98 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.96 Total: -37.96 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 20.75 SS G_CDS: -0.58 Total: 20.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.28 -9.87 -47.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344004228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.310 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds