Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47121 * 2 1 4 4 O 1.42099 * 110.54348 * 68.37540 * 3 2 1 5 5 O 1.42102 * 110.54144 * 291.62105 * 3 2 1 6 6 N 1.65602 * 104.45166 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99973 * 64.99400 * 6 3 2 8 8 C 1.53350 * 109.42250 * 265.13009 * 7 6 3 9 9 C 1.53188 * 109.14976 * 178.67348 * 8 7 6 10 10 N 1.46925 * 108.89442 * 54.58200 * 9 8 7 11 11 C 1.34776 * 120.63544 * 126.29468 * 10 9 8 12 12 O 1.21588 * 120.00211 * 174.96212 * 11 10 9 13 13 N 1.34772 * 119.99868 * 354.96390 * 11 10 9 14 14 C 1.46502 * 120.00424 * 185.06863 * 13 11 10 15 15 C 1.50692 * 109.47120 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00777 * 0.02562 * 15 14 13 17 17 C 1.37888 * 119.99673 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99680 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47253 * 90.00140 * 19 17 15 21 21 H 1.48502 * 109.47280 * 210.00174 * 19 17 15 22 22 H 1.48504 * 109.47272 * 330.00031 * 19 17 15 23 23 C 1.46927 * 118.73541 * 306.31796 * 10 9 8 24 24 C 1.53048 * 109.45947 * 145.00026 * 7 6 3 25 25 H 1.09006 * 109.46856 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47261 * 299.99883 * 1 2 3 27 27 H 1.08996 * 109.46717 * 60.00350 * 1 2 3 28 28 H 1.09000 * 109.47170 * 239.99656 * 2 1 3 29 29 H 1.09008 * 109.46833 * 119.99956 * 2 1 3 30 30 H 0.96997 * 119.99933 * 245.00370 * 6 3 2 31 31 H 1.08998 * 109.45758 * 25.03556 * 7 6 3 32 32 H 1.09005 * 109.68228 * 58.71279 * 8 7 6 33 33 H 1.09002 * 109.47563 * 298.51619 * 8 7 6 34 34 H 1.09000 * 109.59213 * 294.72337 * 9 8 7 35 35 H 1.09003 * 109.58609 * 174.43706 * 9 8 7 36 36 H 0.97004 * 120.00168 * 5.07331 * 13 11 10 37 37 H 1.08998 * 109.47065 * 300.00332 * 14 13 11 38 38 H 1.09000 * 109.46606 * 59.99697 * 14 13 11 39 39 H 0.97002 * 119.99565 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.58513 * 173.39301 * 23 10 9 41 41 H 1.08998 * 109.58967 * 293.67606 * 23 10 9 42 42 H 1.09006 * 109.48873 * 61.43837 * 24 7 6 43 43 H 1.08998 * 109.52350 * 301.36125 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4676 0.9668 -1.1487 8 6 4.6991 -0.5258 -0.8838 9 6 5.3837 -1.1522 -2.1027 10 7 6.6060 -0.3945 -2.4034 11 6 7.7943 -1.0217 -2.5094 12 8 8.7822 -0.3992 -2.8484 13 7 7.8874 -2.3389 -2.2397 14 6 9.1961 -2.9973 -2.2465 15 6 9.0252 -4.4579 -1.9173 16 1 8.0403 -4.8561 -1.7229 17 6 10.1264 -5.2860 -1.8643 18 7 11.3256 -4.8012 -2.1016 19 14 9.9146 -7.0967 -1.4570 20 1 9.7070 -7.8651 -2.7106 21 1 11.1317 -7.5946 -0.7670 22 1 8.7367 -7.2699 -0.5694 23 6 6.5085 1.0601 -2.5859 24 6 5.8126 1.6651 -1.3626 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 4.2982 1.8766 0.7622 31 1 3.8511 1.0855 -2.0397 32 1 3.7434 -1.0202 -0.7094 33 1 5.3362 -0.6449 -0.0074 34 1 4.7107 -1.1149 -2.9593 35 1 5.6408 -2.1888 -1.8848 36 1 7.0879 -2.8510 -2.0411 37 1 9.6476 -2.8981 -3.2336 38 1 9.8417 -2.5300 -1.5030 39 1 12.1003 -5.3839 -2.0646 40 1 7.5080 1.4839 -2.6844 41 1 5.9293 1.2778 -3.4833 42 1 6.4390 1.5255 -0.4816 43 1 5.6481 2.7299 -1.5271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344004228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = -135.405936 kcal Electronic energy + Delta-G solvation = -25390.092076 eV Core-core repulsion = 21596.059749 eV Total energy + Delta-G solvation = -3794.032327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34719 -39.05814 -38.11545 -37.01726 -36.20077 -35.79264 -34.35944 -34.02702 -32.06555 -31.52905 -29.07972 -25.78646 -25.11086 -24.59176 -23.82634 -22.10943 -20.81341 -20.19735 -19.66093 -18.63869 -18.09582 -17.52736 -17.23627 -17.17549 -16.55725 -16.47871 -16.09313 -15.41842 -15.27874 -15.10709 -14.86629 -14.73361 -14.52038 -14.11801 -14.00432 -13.73075 -13.46690 -13.37845 -13.21484 -13.19015 -13.10521 -12.86657 -12.70226 -12.61502 -12.37396 -12.33990 -12.18255 -12.12208 -11.54389 -11.47564 -11.43598 -11.11840 -10.78580 -10.36976 -10.02919 -9.36909 -8.26628 -6.43115 -0.69758 1.45027 1.47840 1.58564 1.73460 1.80915 2.25671 2.40252 2.83302 3.08643 3.20826 3.24985 3.63078 3.76496 3.76851 3.93104 4.01946 4.09708 4.28604 4.34708 4.41894 4.44055 4.61957 4.74727 4.81331 4.85158 4.92085 4.97085 5.01696 5.12698 5.15117 5.16434 5.29318 5.38658 5.50057 5.62875 5.76113 5.87215 6.07350 6.14720 6.68822 7.21931 7.27462 7.73553 8.85795 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.002773 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.791050 B =10093.418605 C =11096.777556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.615 4.615 3 S 2.613 3.387 4 O -0.999 6.999 5 O -0.994 6.994 6 N -1.109 6.109 7 C 0.148 3.852 8 C -0.155 4.155 9 C 0.102 3.898 10 N -0.627 5.627 11 C 0.692 3.308 12 O -0.650 6.650 13 N -0.723 5.723 14 C 0.286 3.714 15 C -0.553 4.553 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.253 1.253 23 C 0.127 3.873 24 C -0.130 4.130 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.423 0.577 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.403 0.597 37 H -0.017 1.017 38 H -0.016 1.016 39 H 0.268 0.732 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.746 7.939 4.994 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.748 4.748 3 S 2.709 3.291 4 O -0.990 6.990 5 O -0.984 6.984 6 N -0.867 5.867 7 C 0.041 3.959 8 C -0.195 4.195 9 C -0.021 4.021 10 N -0.366 5.366 11 C 0.393 3.607 12 O -0.533 6.533 13 N -0.379 5.379 14 C 0.162 3.838 15 C -0.590 4.590 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.176 1.176 23 C 0.003 3.997 24 C -0.170 4.170 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.176 0.824 30 H 0.258 0.742 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.241 0.759 37 H 0.001 0.999 38 H 0.002 0.998 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.436 9.122 4.610 26.488 hybrid contribution 0.892 -1.316 0.495 1.665 sum -23.545 7.807 5.106 25.325 Atomic orbital electron populations 1.21679 0.90323 1.06424 1.03529 1.30479 1.07421 1.22585 1.14327 1.04745 0.73038 0.78576 0.72709 1.93557 1.83733 1.75252 1.46423 1.93563 1.83870 1.74234 1.46693 1.55445 1.25416 1.77659 1.28213 1.20936 0.94530 0.92001 0.88439 1.22694 1.03100 0.95213 0.98497 1.21923 0.85399 0.95762 0.98989 1.47330 1.05714 1.08403 1.75114 1.16268 0.83673 0.82373 0.78365 1.90828 1.38264 1.67108 1.57055 1.45452 1.11409 1.07194 1.73863 1.18387 0.79745 0.91716 0.93939 1.21585 0.94986 0.92987 1.49491 0.89714 1.26073 0.94349 1.04818 0.94393 1.70148 0.99558 1.38210 1.49119 0.85146 0.78150 0.77193 0.78640 1.19679 1.21168 1.17645 1.21510 1.01744 0.78006 0.98406 1.22128 0.95436 1.01014 0.98372 0.87988 0.91171 0.90915 0.82324 0.82398 0.74173 0.87459 0.86796 0.90823 0.88355 0.89633 0.75869 0.99922 0.99847 0.92294 0.91266 0.89450 0.91490 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.92 71.98 0.71 -0.32 16 2 C -0.62 -3.43 5.91 71.98 0.43 -3.00 16 3 S 2.61 36.10 5.44 -56.49 -0.31 35.80 16 4 O -1.00 -21.37 18.08 -127.65 -2.31 -23.68 16 5 O -0.99 -20.81 17.39 -127.65 -2.22 -23.03 16 6 N -1.11 -12.83 5.36 -168.83 -0.90 -13.74 16 7 C 0.15 1.87 2.65 45.13 0.12 1.99 16 8 C -0.16 -1.78 5.68 30.77 0.17 -1.61 16 9 C 0.10 1.74 6.42 86.36 0.55 2.29 16 10 N -0.63 -17.21 2.97 -836.91 -2.49 -19.70 16 11 C 0.69 28.40 8.30 179.06 1.49 29.88 16 12 O -0.65 -33.47 15.79 -3.99 -0.06 -33.54 16 13 N -0.72 -30.52 5.46 -482.31 -2.63 -33.15 16 14 C 0.29 15.68 5.43 85.63 0.47 16.14 16 15 C -0.55 -29.49 9.28 25.60 0.24 -29.26 16 16 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 19 Si 0.99 41.32 29.54 68.60 2.03 43.35 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 23 C 0.13 2.94 6.42 86.36 0.55 3.49 16 24 C -0.13 -2.18 5.61 30.67 0.17 -2.01 16 25 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.16 0.19 6.80 -2.39 -0.02 0.17 16 29 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.42 4.33 8.80 -96.75 -0.85 3.48 16 31 H 0.11 1.17 7.48 -2.39 -0.02 1.15 16 32 H 0.11 0.48 5.76 -2.38 -0.01 0.47 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.51 5.56 -2.39 -0.01 1.49 16 36 H 0.40 13.76 5.78 -92.70 -0.54 13.22 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.07 2.04 7.04 -2.38 -0.02 2.02 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -86.00 358.39 -3.60 -89.59 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.35 Total: 15.45 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 5.36 Total: 18.23 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -5.74 Total: -122.17 kcal Atomic # 8 Polarization: -75.66 SS G_CDS: -4.59 Total: -80.25 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 36.10 SS G_CDS: -0.31 Total: 35.80 kcal Total: -86.00 -3.60 -89.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344004228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.811 kcal (2) G-P(sol) polarization free energy of solvation -85.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds