Wall clock time and date at job start Tue Mar 31 2020 12:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81407 * 102.99944 * 2 1 4 4 H 1.09007 * 110.43468 * 52.45529 * 3 2 1 5 5 C 1.54887 * 110.59695 * 289.83957 * 3 2 1 6 6 C 1.54961 * 102.77485 * 203.34954 * 5 3 2 7 7 C 1.54264 * 104.16226 * 37.88761 * 6 5 3 8 8 H 1.08997 * 110.03750 * 95.75168 * 7 6 5 9 9 N 1.46497 * 110.03282 * 217.13639 * 7 6 5 10 10 C 1.34778 * 120.00276 * 272.90571 * 9 7 6 11 11 O 1.21281 * 119.99842 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00309 * 180.02562 * 10 9 7 13 13 H 1.09005 * 109.47265 * 299.99863 * 12 10 9 14 14 C 1.50694 * 109.47377 * 59.99694 * 12 10 9 15 15 H 1.07998 * 120.00058 * 35.21466 * 14 12 10 16 16 C 1.37882 * 120.00408 * 215.20838 * 14 12 10 17 17 N 1.31510 * 119.99560 * 354.50792 * 16 14 12 18 18 Si 1.86803 * 120.00129 * 174.77752 * 16 14 12 19 19 H 1.48492 * 109.46844 * 179.72743 * 18 16 14 20 20 H 1.48499 * 109.46959 * 299.72906 * 18 16 14 21 21 H 1.48506 * 109.46826 * 59.72748 * 18 16 14 22 22 C 1.50701 * 109.47307 * 180.02562 * 12 10 9 23 23 C 1.38228 * 120.00002 * 293.16359 * 22 12 10 24 24 C 1.38238 * 120.00170 * 179.80951 * 23 22 12 25 25 C 1.38239 * 119.99662 * 0.39289 * 24 23 22 26 26 C 1.38233 * 120.00194 * 359.85905 * 25 24 23 27 27 C 1.38238 * 119.99974 * 359.95822 * 26 25 24 28 28 C 1.53880 * 106.63896 * 336.44364 * 7 6 5 29 29 H 1.08996 * 109.47643 * 300.00184 * 1 2 3 30 30 H 1.09000 * 109.47132 * 60.00632 * 1 2 3 31 31 H 1.09004 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.09001 * 110.75236 * 321.63302 * 5 3 2 33 33 H 1.08993 * 110.75999 * 85.00906 * 5 3 2 34 34 H 1.08996 * 110.47795 * 279.23036 * 6 5 3 35 35 H 1.09005 * 110.53266 * 156.56566 * 6 5 3 36 36 H 0.97009 * 120.00118 * 92.90780 * 9 7 6 37 37 H 0.97006 * 119.99426 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.99876 * 359.97438 * 23 22 12 39 39 H 1.07993 * 120.00093 * 180.23168 * 24 23 22 40 40 H 1.08003 * 119.99953 * 179.83392 * 25 24 23 41 41 H 1.07998 * 120.00342 * 179.97438 * 26 25 24 42 42 H 1.07996 * 120.00303 * 180.02562 * 27 26 25 43 43 H 1.08994 * 110.02783 * 119.26152 * 28 7 6 44 44 H 1.08998 * 110.03102 * 240.69171 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7011 2.2784 0.8099 5 6 1.8651 2.4092 -1.3638 6 6 2.7887 3.6526 -1.4097 7 6 4.1061 3.1681 -0.7696 8 1 4.8060 2.8575 -1.5453 9 7 4.6953 4.2391 0.0378 10 6 5.5124 5.1443 -0.5362 11 8 5.7594 5.0725 -1.7214 12 6 6.1189 6.2456 0.2945 13 1 5.3245 6.8491 0.7336 14 6 6.9572 5.6432 1.3924 15 1 7.5123 4.7346 1.2113 16 6 7.0157 6.2519 2.6282 17 7 6.4287 7.4134 2.8173 18 14 7.9350 5.4304 4.0315 19 1 7.8549 6.2851 5.2431 20 1 7.3229 4.1079 4.3172 21 1 9.3581 5.2451 3.6496 22 6 6.9851 7.1154 -0.5797 23 6 8.1433 6.6030 -1.1335 24 6 8.9357 7.3997 -1.9386 25 6 8.5741 8.7113 -2.1834 26 6 7.4186 9.2253 -1.6253 27 6 6.6242 8.4275 -0.8233 28 6 3.7461 1.9698 0.1261 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0948 1.7278 -2.1831 33 1 0.8166 2.7056 -1.3887 34 1 2.3593 4.4682 -0.8279 35 1 2.9578 3.9655 -2.4401 36 1 4.4974 4.2968 0.9858 37 1 6.4695 7.8415 3.6869 38 1 8.4277 5.5794 -0.9393 39 1 9.8387 6.9982 -2.3743 40 1 9.1946 9.3346 -2.8102 41 1 7.1362 10.2501 -1.8162 42 1 5.7212 8.8289 -0.3876 43 1 4.2707 1.0776 -0.2155 44 1 4.0098 2.1851 1.1615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435351151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:23 Heat of formation + Delta-G solvation = -31.964301 kcal Electronic energy + Delta-G solvation = -24404.714028 eV Core-core repulsion = 21026.016530 eV Total energy + Delta-G solvation = -3378.697498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.44856 -38.24513 -37.05606 -33.64982 -32.92693 -31.07589 -29.91522 -29.30857 -28.80537 -28.01297 -26.58820 -23.85835 -21.59236 -21.22830 -20.98941 -20.00811 -19.33886 -16.92707 -16.61885 -16.19789 -15.98801 -15.70192 -14.80339 -14.73531 -14.43984 -14.21723 -13.86804 -13.75626 -13.55622 -13.41770 -13.25152 -12.75603 -12.45430 -12.34207 -12.00410 -11.87011 -11.70324 -11.50150 -11.27098 -11.23260 -11.04195 -11.02419 -11.01228 -10.62458 -10.40269 -10.25564 -9.99123 -9.98071 -9.42940 -8.78034 -8.60614 -8.33723 -7.92358 -7.83119 -7.58286 -6.28126 -4.34601 1.53894 2.39992 2.40872 2.42902 3.19993 3.25866 3.27693 3.70081 4.01374 4.26885 4.43178 4.48691 4.84739 4.90881 4.91988 5.02741 5.08754 5.33277 5.38854 5.41227 5.46254 5.49744 5.63641 5.71228 5.73953 5.80939 5.91139 5.97504 6.08345 6.17276 6.25591 6.27710 6.46483 6.53080 6.62554 6.86939 6.99471 7.16813 7.26845 7.39011 7.47029 7.62122 7.76715 7.97382 8.08658 8.38899 8.69571 9.24794 9.32130 10.80041 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003698 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.100006 B = 7569.028108 C = 9056.221433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.055 4.055 4 H 0.092 0.908 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.147 3.853 8 H 0.089 0.911 9 N -0.725 5.725 10 C 0.528 3.472 11 O -0.566 6.566 12 C 0.051 3.949 13 H 0.088 0.912 14 C -0.515 4.515 15 H 0.062 0.938 16 C 0.074 3.926 17 N -0.878 5.878 18 Si 0.897 3.103 19 H -0.286 1.286 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.008 4.008 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.404 0.596 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 -7.758 -4.335 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.035 6.035 3 C -0.184 4.184 4 H 0.111 0.889 5 C -0.155 4.155 6 C -0.172 4.172 7 C 0.040 3.960 8 H 0.107 0.893 9 N -0.377 5.377 10 C 0.318 3.682 11 O -0.445 6.445 12 C 0.030 3.970 13 H 0.105 0.895 14 C -0.553 4.553 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.513 5.513 18 Si 0.724 3.276 19 H -0.211 1.211 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.009 4.009 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.168 4.168 26 C -0.150 4.150 27 C -0.137 4.137 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.240 0.760 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.669 -8.569 -5.000 13.175 hybrid contribution -0.411 0.728 1.419 1.647 sum -9.080 -7.842 -3.581 12.521 Atomic orbital electron populations 1.23348 0.94678 1.06160 1.04872 1.86879 1.06976 1.11753 1.97884 1.24057 1.00438 0.92656 1.01271 0.88945 1.22850 0.99567 0.97506 0.95605 1.22836 0.95163 0.97162 1.02011 1.21372 0.94477 0.86653 0.93458 0.89314 1.46104 1.49674 1.29139 1.12780 1.21659 0.76040 0.82810 0.87715 1.90577 1.61546 1.75504 1.16888 1.18110 0.96151 0.90842 0.91937 0.89454 1.20648 1.29974 1.10283 0.94393 0.91978 1.24966 0.94877 0.94480 0.98741 1.69914 1.42773 1.14497 1.24120 0.86560 0.80575 0.79357 0.81078 1.21127 1.19919 1.19967 1.20021 0.94869 0.93821 0.92179 1.20820 0.94362 0.99163 0.96020 1.20950 0.99631 0.94476 1.00215 1.20789 0.97866 0.95785 1.02318 1.20894 0.95923 0.98859 0.99353 1.20979 0.99781 0.94384 0.98524 1.22259 0.92051 0.98733 1.01649 0.90630 0.90522 0.88404 0.90091 0.91505 0.90936 0.90772 0.76030 0.92316 0.87158 0.87638 0.87758 0.87613 0.87094 0.90102 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.72 101.05 1.08 0.14 16 2 S -0.26 -2.85 21.64 -107.50 -2.33 -5.18 16 3 C -0.06 -0.60 3.36 -25.08 -0.08 -0.68 16 4 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.12 -1.21 6.31 -24.70 -0.16 -1.36 16 6 C -0.13 -1.71 6.54 -25.03 -0.16 -1.87 16 7 C 0.15 2.17 3.23 -66.81 -0.22 1.96 16 8 H 0.09 1.47 7.59 -51.93 -0.39 1.08 16 9 N -0.72 -12.75 4.94 -52.72 -0.26 -13.01 16 10 C 0.53 11.39 7.04 -10.99 -0.08 11.32 16 11 O -0.57 -13.44 15.12 5.56 0.08 -13.35 16 12 C 0.05 1.18 2.37 -94.08 -0.22 0.96 16 13 H 0.09 2.16 7.13 -51.93 -0.37 1.79 16 14 C -0.52 -12.68 7.43 -34.44 -0.26 -12.94 16 15 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 16 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 17 N -0.88 -22.91 12.84 55.43 0.71 -22.19 16 18 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.01 -0.18 4.29 -104.62 -0.45 -0.63 16 23 C -0.09 -1.94 8.35 -39.58 -0.33 -2.27 16 24 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 27 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 28 C -0.11 -1.33 6.16 -25.61 -0.16 -1.49 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 6.81 8.19 -40.82 -0.33 6.48 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.11 2.53 7.87 -52.48 -0.41 2.11 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.34 7.96 -52.49 -0.42 1.93 16 43 H 0.08 1.01 7.80 -51.93 -0.40 0.60 16 44 H 0.08 1.06 7.61 -51.93 -0.40 0.66 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -28.24 375.86 -10.77 -39.00 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.92 Total: 11.75 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.70 Total: -17.37 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.45 Total: -35.20 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.33 Total: -5.18 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.24 -10.77 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435351151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.040 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds