Wall clock time and date at job start Tue Mar 31 2020 12:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81404 * 102.99596 * 2 1 4 4 C 1.53000 * 112.84999 * 65.21858 * 3 2 1 5 5 N 1.46506 * 109.46935 * 49.85466 * 4 3 2 6 6 C 1.34777 * 119.99867 * 175.45025 * 5 4 3 7 7 O 1.21278 * 119.99565 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99800 * 180.27106 * 6 5 4 9 9 H 1.08998 * 109.47553 * 59.72624 * 8 6 5 10 10 C 1.50700 * 109.47436 * 299.72049 * 8 6 5 11 11 H 1.08001 * 119.99899 * 334.16221 * 10 8 6 12 12 C 1.37881 * 119.99776 * 154.15115 * 10 8 6 13 13 N 1.31509 * 120.00029 * 5.10061 * 12 10 8 14 14 Si 1.86799 * 119.99480 * 185.09838 * 12 10 8 15 15 H 1.48499 * 109.47096 * 90.00367 * 14 12 10 16 16 H 1.48501 * 109.46669 * 209.99905 * 14 12 10 17 17 H 1.48497 * 109.47446 * 329.99995 * 14 12 10 18 18 C 1.50707 * 109.46956 * 179.72211 * 8 6 5 19 19 C 1.38238 * 119.99640 * 66.29598 * 18 8 6 20 20 C 1.38234 * 119.99606 * 179.78426 * 19 18 8 21 21 C 1.38235 * 119.99915 * 0.44826 * 20 19 18 22 22 C 1.38236 * 120.00217 * 359.80952 * 21 20 19 23 23 C 1.38227 * 120.00181 * 246.57372 * 18 8 6 24 24 C 1.53785 * 113.68778 * 196.48599 * 3 2 1 25 25 C 1.53784 * 87.07753 * 139.99197 * 24 3 2 26 26 C 1.53775 * 87.08164 * 334.56752 * 25 24 3 27 27 H 1.08999 * 109.47250 * 54.97158 * 1 2 3 28 28 H 1.09004 * 109.47076 * 174.97439 * 1 2 3 29 29 H 1.09000 * 109.47305 * 294.96604 * 1 2 3 30 30 H 1.08992 * 109.47214 * 289.85083 * 4 3 2 31 31 H 1.08995 * 109.46954 * 169.84691 * 4 3 2 32 32 H 0.96995 * 119.99963 * 355.44662 * 5 4 3 33 33 H 0.97003 * 119.99799 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.00314 * 0.02562 * 19 18 8 35 35 H 1.08003 * 120.00051 * 180.27414 * 20 19 18 36 36 H 1.08004 * 119.99929 * 179.82810 * 21 20 19 37 37 H 1.08002 * 120.00158 * 180.02562 * 22 21 20 38 38 H 1.08006 * 120.00178 * 359.97438 * 23 18 8 39 39 H 1.08991 * 113.61441 * 254.53988 * 24 3 2 40 40 H 1.09001 * 113.61335 * 25.44653 * 24 3 2 41 41 H 1.08999 * 113.61328 * 220.01862 * 25 24 3 42 42 H 1.09002 * 113.68840 * 89.13194 * 25 24 3 43 43 H 1.09002 * 113.61582 * 270.88417 * 26 25 24 44 44 H 1.09000 * 113.61607 * 139.98465 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.7798 2.4794 1.2801 5 7 2.2469 1.7239 2.4452 6 6 2.0526 2.2115 3.6866 7 8 1.4915 3.2758 3.8390 8 6 2.5385 1.4374 4.8847 9 1 3.6180 1.3024 4.8168 10 6 1.8650 0.0897 4.9190 11 1 0.9004 -0.0439 4.4521 12 6 2.4805 -0.9728 5.5462 13 7 3.6063 -0.7878 6.2004 14 14 1.7152 -2.6750 5.4668 15 1 2.2355 -3.3967 4.2778 16 1 2.0626 -3.4317 6.6964 17 1 0.2391 -2.5497 5.3630 18 6 2.2055 2.1975 6.1427 19 6 0.8858 2.3769 6.5129 20 6 0.5805 3.0703 7.6691 21 6 1.5946 3.5922 8.4502 22 6 2.9141 3.4173 8.0772 23 6 3.2195 2.7202 6.9233 24 6 3.6767 2.0659 -0.3996 25 6 3.1302 3.2653 -1.1919 26 6 1.8017 2.4968 -1.2870 27 1 -0.3634 0.5899 -0.8415 28 1 -0.3633 -1.0238 -0.0900 29 1 -0.3634 0.4338 0.9316 30 1 0.6920 2.5452 1.3020 31 1 2.2051 3.4827 1.3034 32 1 2.6960 0.8729 2.3232 33 1 4.0390 -1.5352 6.6420 34 1 0.0934 1.9720 5.9009 35 1 -0.4504 3.2066 7.9607 36 1 1.3559 4.1363 9.3521 37 1 3.7064 3.8247 8.6877 38 1 4.2505 2.5835 6.6319 39 1 4.3108 2.3498 0.4402 40 1 4.1239 1.2951 -1.0274 41 1 3.6196 3.4121 -2.1548 42 1 3.0632 4.1827 -0.6070 43 1 1.7362 1.8438 -2.1573 44 1 0.9220 3.1285 -1.1635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519621562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:45 Heat of formation + Delta-G solvation = -15.076825 kcal Electronic energy + Delta-G solvation = -24885.343792 eV Core-core repulsion = 21507.378590 eV Total energy + Delta-G solvation = -3377.965202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04267 -40.07080 -39.10172 -35.50550 -35.13062 -32.84376 -31.51464 -30.17794 -29.58421 -28.23443 -26.63555 -25.78985 -24.62743 -23.18695 -22.40344 -21.05666 -19.96217 -18.65822 -18.16000 -17.68344 -17.40926 -16.73278 -16.37694 -16.19895 -15.86086 -15.60507 -15.36586 -15.25125 -14.53195 -14.41268 -14.39001 -14.05996 -13.94115 -13.84562 -13.64145 -13.44860 -13.26326 -13.18824 -12.94424 -12.80773 -12.76635 -12.21977 -11.96004 -11.90253 -11.69248 -11.54318 -11.35473 -11.25603 -10.70596 -10.63440 -10.43443 -9.92082 -9.53490 -9.23030 -8.63326 -8.18725 -6.30550 0.74818 0.78407 0.83582 1.41933 1.43291 1.51333 1.60068 1.92858 2.42630 2.49552 3.10669 3.28349 3.42539 3.46905 3.58149 3.81390 4.23265 4.29018 4.30950 4.31120 4.34066 4.41864 4.44433 4.46461 4.54361 4.68961 4.77283 4.79361 4.86658 4.88632 4.98469 4.99173 5.04370 5.08936 5.10531 5.38907 5.40761 5.45473 5.63887 5.66711 5.80074 5.84844 5.96215 6.26147 6.42346 6.71491 6.78028 7.36359 7.51755 8.89030 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.004865 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.425293 B = 5754.558443 C = 7194.245786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.279 6.279 3 C -0.068 4.068 4 C 0.147 3.853 5 N -0.712 5.712 6 C 0.527 3.473 7 O -0.593 6.593 8 C 0.058 3.942 9 H 0.056 0.944 10 C -0.513 4.513 11 H 0.052 0.948 12 C 0.035 3.965 13 N -0.902 5.902 14 Si 0.950 3.050 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.030 4.030 19 C -0.111 4.111 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.109 4.109 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 5.259 -12.370 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.050 6.050 3 C -0.178 4.178 4 C 0.021 3.979 5 N -0.365 5.365 6 C 0.316 3.684 7 O -0.475 6.475 8 C 0.037 3.963 9 H 0.074 0.926 10 C -0.551 4.551 11 H 0.070 0.930 12 C -0.167 4.167 13 N -0.538 5.538 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.031 4.031 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.164 4.164 26 C -0.149 4.149 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.248 0.752 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.757 4.967 -12.175 13.266 hybrid contribution -0.891 -0.684 0.324 1.169 sum -2.648 4.283 -11.851 12.877 Atomic orbital electron populations 1.23343 0.92629 1.07046 1.05010 1.86922 1.09645 1.11167 1.97223 1.24614 1.03028 0.92480 0.97655 1.21084 0.98466 0.94969 0.83372 1.45985 1.60817 1.25143 1.04578 1.21307 0.77167 0.84399 0.85509 1.90543 1.45261 1.24547 1.87142 1.17937 0.98326 0.93246 0.86841 0.92612 1.20688 1.04872 0.92366 1.37182 0.92987 1.25549 0.95175 1.02050 0.93950 1.70040 1.18358 1.32550 1.32877 0.85672 0.78875 0.80175 0.77711 1.19371 1.21184 1.19759 1.20053 0.93335 0.92759 0.96940 1.20819 0.95916 0.99145 0.97051 1.21302 1.00122 0.99005 0.95015 1.21249 0.92438 1.01816 1.00743 1.21286 0.97475 0.99527 0.96546 1.21086 0.98377 0.99351 0.96803 1.22868 0.92044 0.99327 1.00564 1.22803 0.95840 0.96307 1.01435 1.23188 0.99031 0.98398 0.94243 0.88454 0.87450 0.92023 0.92895 0.90892 0.75200 0.92558 0.88920 0.84778 0.83598 0.84355 0.87752 0.91564 0.88208 0.88481 0.89788 0.87359 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 10.62 113.37 1.20 -1.33 16 2 S -0.28 -7.50 20.48 -56.49 -1.16 -8.66 16 3 C -0.07 -1.60 0.90 -10.27 -0.01 -1.61 16 4 C 0.15 4.51 4.93 86.38 0.43 4.93 16 5 N -0.71 -27.36 5.23 -463.07 -2.42 -29.78 16 6 C 0.53 24.49 7.04 87.66 0.62 25.11 16 7 O -0.59 -29.82 15.43 -3.02 -0.05 -29.87 16 8 C 0.06 2.91 2.22 -13.03 -0.03 2.88 16 9 H 0.06 3.02 7.42 -2.39 -0.02 3.00 16 10 C -0.51 -26.93 7.47 25.60 0.19 -26.74 16 11 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 12 C 0.03 1.84 5.45 84.66 0.46 2.30 16 13 N -0.90 -49.71 13.00 21.45 0.28 -49.44 16 14 Si 0.95 42.39 29.54 68.60 2.03 44.41 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C -0.03 -1.48 4.30 -19.86 -0.09 -1.57 16 19 C -0.11 -5.25 8.32 22.27 0.19 -5.07 16 20 C -0.14 -5.40 10.05 22.27 0.22 -5.17 16 21 C -0.14 -5.18 10.05 22.27 0.22 -4.96 16 22 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 23 C -0.14 -6.32 9.67 22.27 0.22 -6.11 16 24 C -0.11 -2.28 7.24 31.12 0.23 -2.06 16 25 C -0.12 -1.97 7.73 31.12 0.24 -1.73 16 26 C -0.11 -1.82 7.21 31.12 0.22 -1.60 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.07 2.24 7.33 -2.39 -0.02 2.22 16 32 H 0.41 15.99 7.36 -92.71 -0.68 15.31 16 33 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.09 4.55 7.88 -2.91 -0.02 4.52 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 38 H 0.10 4.73 7.96 -2.91 -0.02 4.71 16 39 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 40 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.38 7.65 -2.39 -0.02 1.36 16 43 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 44 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -64.30 377.17 3.52 -60.78 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: 0.30 Total: 40.05 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.54 Total: -27.50 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.14 Total: -79.22 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -1.16 Total: -8.66 kcal Total: -64.30 3.52 -60.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519621562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -64.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds