Wall clock time and date at job start Tue Mar 31 2020 12:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99701 * 2 1 4 4 H 1.08004 * 120.00188 * 203.04905 * 3 2 1 5 5 C 1.38822 * 120.00027 * 23.05200 * 3 2 1 6 6 N 1.31616 * 119.99675 * 12.93696 * 5 3 2 7 7 Si 1.86797 * 119.99996 * 192.93639 * 5 3 2 8 8 H 1.48503 * 109.46873 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46985 * 119.99898 * 7 5 3 10 10 H 1.48506 * 109.46944 * 240.00121 * 7 5 3 11 11 C 1.46499 * 120.00239 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47173 * 89.99562 * 11 2 1 13 13 C 1.53003 * 109.46995 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47094 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99971 * 179.97438 * 14 13 12 16 16 O 1.21560 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.47846 * 119.99941 * 180.02562 * 15 14 13 18 18 C 1.39721 * 119.43792 * 180.27719 * 17 15 14 19 19 C 1.36999 * 119.59333 * 180.28281 * 18 17 15 20 20 C 1.39896 * 118.36497 * 359.45138 * 19 18 17 21 21 N 1.35425 * 133.68053 * 180.25689 * 20 19 18 22 22 C 1.30932 * 109.56843 * 180.02562 * 21 20 19 23 23 O 1.35178 * 124.99642 * 180.02562 * 22 21 20 24 24 N 1.36385 * 110.00410 * 359.97438 * 22 21 20 25 25 H 0.97004 * 126.31686 * 179.97438 * 24 22 21 26 26 C 1.38255 * 107.36147 * 359.97438 * 24 22 21 27 27 N 1.31763 * 133.71282 * 179.97438 * 26 24 22 28 28 H 1.09004 * 109.46745 * 275.11634 * 1 2 3 29 29 H 1.09000 * 109.47554 * 35.11751 * 1 2 3 30 30 H 1.09008 * 109.47169 * 155.12217 * 1 2 3 31 31 H 0.97002 * 120.00065 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.46869 * 329.99413 * 11 2 1 33 33 H 1.08998 * 109.46723 * 209.99777 * 11 2 1 34 34 H 1.08998 * 109.47345 * 60.00142 * 12 11 2 35 35 H 1.08994 * 109.47015 * 299.99687 * 12 11 2 36 36 H 1.08998 * 109.46976 * 59.99894 * 13 12 11 37 37 H 1.08998 * 109.46793 * 300.00149 * 13 12 11 38 38 H 0.96997 * 120.00290 * 0.02562 * 14 13 12 39 39 H 1.08003 * 120.20491 * 0.03068 * 18 17 15 40 40 H 1.07993 * 120.81658 * 179.72921 * 19 18 17 41 41 H 0.96710 * 113.99967 * 269.99492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5386 2.3401 0.4708 6 7 0.4119 2.2596 1.1462 7 14 2.3156 4.0074 0.1456 8 1 3.5696 3.8265 -0.6291 9 1 1.3712 4.8507 -0.6304 10 1 2.6240 4.6704 1.4381 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2170 -3.0351 -1.4438 14 7 3.4606 -3.4578 -2.8251 15 6 4.1231 -4.6053 -3.0719 16 8 4.5181 -5.2897 -2.1482 17 6 4.3694 -5.0315 -4.4660 18 6 5.0523 -6.2262 -4.7083 19 6 5.2873 -6.6213 -5.9989 20 6 4.8192 -5.8101 -7.0380 21 7 4.8704 -5.8976 -8.3885 22 6 4.2721 -4.8603 -8.9181 23 8 4.1417 -4.6342 -10.2444 24 7 3.7989 -4.0423 -7.9348 25 1 3.3185 -3.2092 -8.0622 26 6 4.1302 -4.6194 -6.7230 27 7 3.9312 -4.2765 -5.4664 28 1 -0.3633 0.0917 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3634 -0.9324 -0.4324 31 1 -0.0153 3.0661 1.4749 32 1 1.6085 -2.0285 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 3.0415 -0.9499 -1.9568 35 1 1.5001 -1.8400 -1.9570 36 1 2.6276 -3.7947 -0.9303 37 1 4.1694 -2.9053 -0.9298 38 1 3.1457 -2.9114 -3.5622 39 1 5.3963 -6.8324 -3.8833 40 1 5.8170 -7.5387 -6.2088 41 1 4.8690 -4.1268 -10.6303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689827757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:55 Heat of formation + Delta-G solvation = 39.751374 kcal Electronic energy + Delta-G solvation = -25121.091464 eV Core-core repulsion = 21231.503327 eV Total energy + Delta-G solvation = -3889.588137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.90323 -40.21786 -38.83093 -37.34094 -36.27147 -34.87273 -34.27002 -32.18919 -31.70456 -30.42533 -29.50752 -26.08091 -25.65864 -24.53388 -23.70408 -22.32673 -22.00506 -21.03878 -20.27281 -19.80901 -18.66008 -17.95666 -17.74576 -16.73143 -16.55925 -15.93738 -15.65300 -15.36718 -15.08868 -14.84329 -14.30536 -14.17447 -13.77821 -13.58170 -13.29072 -12.99572 -12.75656 -12.67959 -12.54617 -11.80910 -11.70968 -11.57564 -11.43698 -11.03541 -10.81347 -10.80352 -10.49521 -10.38742 -10.17130 -9.86547 -9.79526 -9.70875 -9.47266 -9.10348 -8.85017 -8.54868 -6.73635 -5.71700 -3.18741 -0.09371 0.73322 1.49491 1.85864 2.62644 2.90522 3.10239 3.36963 3.44073 3.46155 3.51062 3.69732 4.03775 4.31927 4.49557 4.55766 4.60010 5.10719 5.21039 5.22877 5.43383 5.45193 5.50630 5.57366 5.80559 5.89157 5.94110 6.02555 6.09993 6.16533 6.41933 6.51395 6.75390 6.77046 6.81111 6.94742 6.99896 7.14581 7.38039 7.52775 7.74120 7.81393 8.09368 8.40860 9.24637 9.88356 10.37417 11.33123 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002272 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.845504 B =12320.855839 C =13468.740679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.604 5.604 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.118 3.882 14 N -0.703 5.703 15 C 0.569 3.431 16 O -0.531 6.531 17 C 0.125 3.875 18 C -0.119 4.119 19 C -0.026 4.026 20 C 0.035 3.965 21 N -0.480 5.480 22 C 0.477 3.523 23 O -0.436 6.436 24 N -0.586 5.586 25 H 0.432 0.568 26 C 0.248 3.752 27 N -0.450 5.450 28 H 0.031 0.969 29 H 0.039 0.961 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.410 0.590 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 -15.878 -20.403 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.006 4.006 14 N -0.353 5.353 15 C 0.352 3.648 16 O -0.407 6.407 17 C -0.023 4.023 18 C -0.142 4.142 19 C -0.054 4.054 20 C -0.087 4.087 21 N -0.212 5.212 22 C 0.172 3.828 23 O -0.239 6.239 24 N -0.213 5.213 25 H 0.273 0.727 26 C 0.010 3.990 27 N -0.166 5.166 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.246 0.754 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 8.204 -16.392 -19.987 27.119 hybrid contribution 0.250 2.052 -0.793 2.214 sum 8.454 -14.340 -20.780 26.625 Atomic orbital electron populations 1.20794 0.82676 0.95316 0.99487 1.43904 1.01863 1.00706 1.86131 1.19226 0.98238 0.85614 1.35261 0.91396 1.25042 0.97937 0.98567 0.98284 1.70081 1.19471 1.27040 1.38691 0.86195 0.78516 0.84384 0.77512 1.20345 1.21682 1.21720 1.20599 0.96397 0.88519 0.91775 1.22541 0.99533 0.94139 1.02960 1.21570 1.00729 0.97228 0.81056 1.46033 1.55937 1.22925 1.10442 1.17664 0.78946 0.81757 0.86389 1.90818 1.51686 1.54280 1.43910 1.21036 0.97103 0.92423 0.91738 1.21626 0.98402 0.96528 0.97671 1.20482 0.96841 0.98813 0.89222 1.19674 1.02081 0.95822 0.91081 1.70665 1.22337 1.21511 1.06656 1.20230 0.93477 0.86715 0.82425 1.84835 1.50078 1.76476 1.12469 1.43070 1.50623 1.23643 1.03983 0.72732 1.18422 1.00539 0.93847 0.86238 1.66179 1.20181 1.33292 0.96930 0.95061 0.94196 0.98381 0.93827 0.94333 0.93202 0.91493 0.92166 0.91340 0.91183 0.75439 0.82064 0.82917 0.72391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.98 59.85 0.54 4.53 16 2 N -0.60 -15.11 2.92 -181.11 -0.53 -15.64 16 3 C -0.25 -6.94 9.65 -15.06 -0.15 -7.09 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.00 -0.01 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -26.61 10.71 55.49 0.59 -26.02 16 7 Si 0.90 21.80 29.57 -169.99 -5.03 16.77 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.16 3.10 5.64 -4.04 -0.02 3.08 16 12 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 13 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 14 N -0.70 -9.24 5.54 -61.25 -0.34 -9.58 16 15 C 0.57 7.73 7.80 -12.33 -0.10 7.63 16 16 O -0.53 -8.46 16.29 5.31 0.09 -8.37 16 17 C 0.13 1.46 6.74 -82.97 -0.56 0.90 16 18 C -0.12 -1.13 9.55 -39.48 -0.38 -1.51 16 19 C -0.03 -0.23 10.16 -39.41 -0.40 -0.63 16 20 C 0.04 0.36 7.24 -84.56 -0.61 -0.25 16 21 N -0.48 -4.84 11.30 -12.11 -0.14 -4.98 16 22 C 0.48 3.62 9.39 -88.78 -0.83 2.78 16 23 O -0.44 -1.96 13.62 -17.23 -0.23 -2.20 16 24 N -0.59 -4.31 6.25 -13.33 -0.08 -4.39 16 25 H 0.43 2.03 8.96 -40.82 -0.37 1.66 16 26 C 0.25 2.55 8.46 -155.52 -1.32 1.24 16 27 N -0.45 -5.10 9.54 -8.78 -0.08 -5.18 16 28 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 29 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 30 H 0.00 -0.05 8.03 -51.92 -0.42 -0.47 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.41 4.97 7.78 -40.82 -0.32 4.65 16 39 H 0.16 1.33 7.61 -52.48 -0.40 0.93 16 40 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.42 -0.45 9.06 45.56 0.41 -0.04 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -35.32 356.13 -8.82 -44.14 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.35 Total: 0.47 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -4.09 Total: 9.62 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -0.58 Total: -65.80 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.15 Total: -10.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.32 -8.82 -44.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689827757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.894 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds