Wall clock time and date at job start Tue Mar 31 2020 12:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99701 * 2 1 4 4 H 1.08004 * 120.00188 * 203.04905 * 3 2 1 5 5 C 1.38822 * 120.00027 * 23.05200 * 3 2 1 6 6 N 1.31616 * 119.99675 * 12.93696 * 5 3 2 7 7 Si 1.86797 * 119.99996 * 192.93639 * 5 3 2 8 8 H 1.48503 * 109.46873 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46985 * 119.99898 * 7 5 3 10 10 H 1.48506 * 109.46944 * 240.00121 * 7 5 3 11 11 C 1.46499 * 120.00239 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47173 * 89.99562 * 11 2 1 13 13 C 1.53003 * 109.46995 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47094 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99971 * 179.97438 * 14 13 12 16 16 O 1.21560 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.47846 * 119.99941 * 180.02562 * 15 14 13 18 18 C 1.39721 * 119.43792 * 180.27719 * 17 15 14 19 19 C 1.36999 * 119.59333 * 180.28281 * 18 17 15 20 20 C 1.39896 * 118.36497 * 359.45138 * 19 18 17 21 21 N 1.35425 * 133.68053 * 180.25689 * 20 19 18 22 22 C 1.30932 * 109.56843 * 180.02562 * 21 20 19 23 23 O 1.35178 * 124.99642 * 180.02562 * 22 21 20 24 24 N 1.36385 * 110.00410 * 359.97438 * 22 21 20 25 25 H 0.97004 * 126.31686 * 179.97438 * 24 22 21 26 26 C 1.38255 * 107.36147 * 359.97438 * 24 22 21 27 27 N 1.31763 * 133.71282 * 179.97438 * 26 24 22 28 28 H 1.09004 * 109.46745 * 275.11634 * 1 2 3 29 29 H 1.09000 * 109.47554 * 35.11751 * 1 2 3 30 30 H 1.09008 * 109.47169 * 155.12217 * 1 2 3 31 31 H 0.97002 * 120.00065 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.46869 * 329.99413 * 11 2 1 33 33 H 1.08998 * 109.46723 * 209.99777 * 11 2 1 34 34 H 1.08998 * 109.47345 * 60.00142 * 12 11 2 35 35 H 1.08994 * 109.47015 * 299.99687 * 12 11 2 36 36 H 1.08998 * 109.46976 * 59.99894 * 13 12 11 37 37 H 1.08998 * 109.46793 * 300.00149 * 13 12 11 38 38 H 0.96997 * 120.00290 * 0.02562 * 14 13 12 39 39 H 1.08003 * 120.20491 * 0.03068 * 18 17 15 40 40 H 1.07993 * 120.81658 * 179.72921 * 19 18 17 41 41 H 0.96710 * 113.99967 * 269.99492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5386 2.3401 0.4708 6 7 0.4119 2.2596 1.1462 7 14 2.3156 4.0074 0.1456 8 1 3.5696 3.8265 -0.6291 9 1 1.3712 4.8507 -0.6304 10 1 2.6240 4.6704 1.4381 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2170 -3.0351 -1.4438 14 7 3.4606 -3.4578 -2.8251 15 6 4.1231 -4.6053 -3.0719 16 8 4.5181 -5.2897 -2.1482 17 6 4.3694 -5.0315 -4.4660 18 6 5.0523 -6.2262 -4.7083 19 6 5.2873 -6.6213 -5.9989 20 6 4.8192 -5.8101 -7.0380 21 7 4.8704 -5.8976 -8.3885 22 6 4.2721 -4.8603 -8.9181 23 8 4.1417 -4.6342 -10.2444 24 7 3.7989 -4.0423 -7.9348 25 1 3.3185 -3.2092 -8.0622 26 6 4.1302 -4.6194 -6.7230 27 7 3.9312 -4.2765 -5.4664 28 1 -0.3633 0.0917 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3634 -0.9324 -0.4324 31 1 -0.0153 3.0661 1.4749 32 1 1.6085 -2.0285 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 3.0415 -0.9499 -1.9568 35 1 1.5001 -1.8400 -1.9570 36 1 2.6276 -3.7947 -0.9303 37 1 4.1694 -2.9053 -0.9298 38 1 3.1457 -2.9114 -3.5622 39 1 5.3963 -6.8324 -3.8833 40 1 5.8170 -7.5387 -6.2088 41 1 4.8690 -4.1268 -10.6303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689827757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:54 Heat of formation + Delta-G solvation = 10.526265 kcal Electronic energy + Delta-G solvation = -25122.358760 eV Core-core repulsion = 21231.503327 eV Total energy + Delta-G solvation = -3890.855432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.56488 -41.14194 -39.56761 -38.04500 -37.80676 -36.25552 -34.99110 -33.79493 -32.54636 -31.81320 -30.57533 -27.95396 -27.17802 -25.49750 -24.52805 -23.48786 -22.93772 -22.19991 -21.72110 -20.40243 -19.45969 -18.73033 -18.62252 -18.49700 -17.29115 -17.13269 -16.77567 -16.56654 -16.20808 -15.91401 -15.57465 -15.33213 -15.01765 -14.67192 -14.55476 -14.41458 -14.15950 -13.48948 -13.27665 -13.24174 -13.00431 -12.81553 -12.62125 -12.51530 -12.47815 -12.29231 -12.24805 -12.06398 -11.83120 -11.47029 -11.43174 -10.64784 -10.50701 -10.18423 -10.13967 -9.61714 -8.76871 -7.81657 -5.31100 -0.82018 0.02655 0.90506 1.16101 1.46353 1.47399 1.57971 1.75959 2.00819 2.40527 2.52097 2.68961 3.03544 3.28964 3.32179 3.66490 3.74305 3.77447 3.90534 4.13839 4.28325 4.47423 4.49419 4.51980 4.68541 4.79371 4.87209 4.87602 4.90814 4.96173 5.24811 5.30346 5.31503 5.38182 5.51896 5.62983 5.65001 5.72336 6.22139 6.34471 6.36067 6.49033 6.61535 7.05856 7.16541 7.88958 8.32605 9.21685 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002272 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.845504 B =12320.855839 C =13468.740679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.622 5.622 3 C -0.259 4.259 4 H 0.072 0.928 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.150 3.850 12 C -0.129 4.129 13 C 0.129 3.871 14 N -0.700 5.700 15 C 0.571 3.429 16 O -0.559 6.559 17 C 0.104 3.896 18 C -0.114 4.114 19 C -0.021 4.021 20 C 0.028 3.972 21 N -0.510 5.510 22 C 0.497 3.503 23 O -0.434 6.434 24 N -0.576 5.576 25 H 0.443 0.557 26 C 0.230 3.770 27 N -0.458 5.458 28 H 0.004 0.996 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.247 0.753 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 -16.591 -22.550 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.389 4.389 4 H 0.090 0.910 5 C -0.253 4.253 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.190 1.190 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.024 3.976 12 C -0.169 4.169 13 C 0.005 3.995 14 N -0.351 5.351 15 C 0.356 3.644 16 O -0.437 6.437 17 C -0.043 4.043 18 C -0.138 4.138 19 C -0.049 4.049 20 C -0.094 4.094 21 N -0.243 5.243 22 C 0.191 3.809 23 O -0.240 6.240 24 N -0.205 5.205 25 H 0.287 0.713 26 C -0.009 4.009 27 N -0.174 5.174 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.252 0.748 39 H 0.189 0.811 40 H 0.198 0.802 41 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 9.253 -17.097 -22.184 29.497 hybrid contribution -0.053 2.209 -0.290 2.229 sum 9.200 -14.888 -22.475 28.486 Atomic orbital electron populations 1.20547 0.82876 0.95945 0.97620 1.44174 1.02152 1.01836 1.86353 1.19556 0.98429 0.86732 1.34167 0.91041 1.25830 0.98731 1.02009 0.98694 1.70245 1.20939 1.27496 1.40130 0.85178 0.78015 0.80028 0.77078 1.18952 1.21838 1.22034 1.20784 0.95900 0.86884 0.94051 1.22171 0.99809 0.94867 1.00090 1.21328 1.00291 0.96037 0.81851 1.45924 1.55989 1.23103 1.10050 1.17903 0.78142 0.81230 0.87099 1.90795 1.52848 1.55045 1.45013 1.20793 0.99090 0.93686 0.90780 1.21722 0.97818 0.95810 0.98447 1.20765 0.96287 0.99418 0.88384 1.20001 1.01812 0.95983 0.91632 1.70679 1.24166 1.22919 1.06528 1.20318 0.91418 0.85805 0.83323 1.84816 1.51558 1.76993 1.10655 1.43053 1.50425 1.23979 1.03042 0.71340 1.18592 1.01257 0.94523 0.86498 1.66067 1.20449 1.33551 0.97380 0.97801 0.96732 0.94889 0.94342 0.92980 0.93522 0.92410 0.91892 0.90989 0.91429 0.74801 0.81083 0.80233 0.69307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.67 8.98 127.77 1.15 9.82 16 2 N -0.62 -30.99 2.92 -726.91 -2.12 -33.12 16 3 C -0.26 -14.12 9.65 84.04 0.81 -13.31 16 4 H 0.07 3.77 7.86 -2.91 -0.02 3.75 16 5 C -0.06 -3.26 5.10 84.87 0.43 -2.83 16 6 N -0.94 -56.18 10.71 21.65 0.23 -55.95 16 7 Si 0.97 45.03 29.57 68.60 2.03 47.06 16 8 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 11 C 0.15 5.85 5.64 86.38 0.49 6.34 16 12 C -0.13 -4.06 5.65 30.59 0.17 -3.89 16 13 C 0.13 3.51 5.67 86.38 0.49 4.00 16 14 N -0.70 -17.77 5.54 -465.97 -2.58 -20.35 16 15 C 0.57 15.17 7.80 86.79 0.68 15.85 16 16 O -0.56 -17.55 16.29 -3.91 -0.06 -17.62 16 17 C 0.10 2.33 6.74 41.90 0.28 2.62 16 18 C -0.11 -2.05 9.55 22.34 0.21 -1.83 16 19 C -0.02 -0.33 10.16 22.38 0.23 -0.11 16 20 C 0.03 0.53 7.24 39.70 0.29 0.81 16 21 N -0.51 -9.37 11.30 -306.04 -3.46 -12.82 16 22 C 0.50 6.45 9.39 179.70 1.69 8.14 16 23 O -0.43 -2.69 13.62 -84.57 -1.15 -3.85 16 24 N -0.58 -7.43 6.25 -307.04 -1.92 -9.35 16 25 H 0.44 3.32 8.96 -92.71 -0.83 2.49 16 26 C 0.23 4.45 8.46 134.00 1.13 5.59 16 27 N -0.46 -9.98 9.54 -181.68 -1.73 -11.71 16 28 H 0.00 0.20 7.34 -2.38 -0.02 0.18 16 29 H 0.01 0.75 7.34 -2.39 -0.02 0.74 16 30 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 33 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.42 9.66 7.78 -92.71 -0.72 8.94 16 39 H 0.17 2.63 7.61 -2.91 -0.02 2.61 16 40 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.44 -2.35 9.06 -74.05 -0.67 -3.02 16 Total: -1.00 -75.76 356.13 -3.83 -79.60 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -1.11 Total: 6.90 kcal Atomic # 6 Polarization: 23.16 SS G_CDS: 8.05 Total: 31.21 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -11.58 Total: -143.30 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.22 Total: -21.46 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.76 -3.83 -79.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689827757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.124 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds