Wall clock time and date at job start Tue Mar 31 2020 12:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46453 * 2 1 4 4 O 1.42662 * 109.50134 * 239.94599 * 2 1 3 5 Xx 1.42104 * 108.78427 * 240.01525 * 4 2 1 6 5 O 1.42005 * 126.48073 * 180.02562 * 5 4 2 7 6 C 1.57029 * 107.04392 * 0.02562 * 5 4 2 8 7 C 1.39094 * 132.97429 * 180.02562 * 7 5 4 9 8 C 1.38062 * 119.71201 * 180.25549 * 8 7 5 10 9 C 1.38405 * 120.05404 * 359.52830 * 9 8 7 11 10 C 1.50699 * 119.80492 * 180.26233 * 10 9 8 12 11 N 1.46901 * 109.46922 * 270.18935 * 11 10 9 13 12 C 1.48534 * 111.00323 * 52.60764 * 12 11 10 14 13 C 1.54932 * 103.23021 * 159.71881 * 13 12 11 15 14 H 1.09005 * 110.87603 * 81.01920 * 14 13 12 16 15 F 1.39900 * 110.72311 * 204.22727 * 14 13 12 17 16 C 1.54588 * 102.92124 * 322.58803 * 14 13 12 18 17 C 1.47904 * 111.00134 * 170.00451 * 12 11 10 19 18 C 1.50703 * 109.91623 * 94.60530 * 18 12 11 20 19 N 1.27937 * 120.00340 * 354.99842 * 19 18 12 21 20 Si 1.86796 * 119.99660 * 175.00022 * 19 18 12 22 21 H 1.48500 * 109.47561 * 0.02562 * 21 19 18 23 22 H 1.48511 * 109.47072 * 120.00067 * 21 19 18 24 23 H 1.48500 * 109.47513 * 239.99950 * 21 19 18 25 24 C 1.38364 * 120.37999 * 0.45429 * 10 9 8 26 25 C 1.37975 * 120.07587 * 359.78214 * 25 10 9 27 26 H 1.09001 * 109.46948 * 299.94768 * 1 2 3 28 27 H 1.08998 * 109.47166 * 59.94592 * 1 2 3 29 28 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 30 29 H 1.09003 * 109.46715 * 180.02562 * 3 2 1 31 30 H 1.08999 * 109.47277 * 300.05290 * 3 2 1 32 31 H 1.09002 * 109.46903 * 60.05226 * 3 2 1 33 32 H 0.96698 * 113.99655 * 359.97438 * 6 5 4 34 33 H 1.08002 * 120.14129 * 359.97135 * 8 7 5 35 34 H 1.07996 * 119.97586 * 179.72293 * 9 8 7 36 35 H 1.08989 * 109.47666 * 30.18892 * 11 10 9 37 36 H 1.09003 * 109.47090 * 150.19612 * 11 10 9 38 37 H 1.09003 * 110.66316 * 278.15901 * 13 12 11 39 38 H 1.09000 * 110.66356 * 41.28351 * 13 12 11 40 39 H 1.08999 * 110.31319 * 263.03506 * 17 14 13 41 40 H 1.09004 * 110.31014 * 140.87705 * 17 14 13 42 41 H 1.08993 * 109.91422 * 333.51072 * 18 12 11 43 42 H 0.96994 * 120.00303 * 179.97438 * 20 19 18 44 43 H 1.08001 * 119.96036 * 179.76500 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 2.0062 -0.6735 -1.1640 5 8 3.4481 -2.7116 -1.6137 6 6 2.8002 -1.7974 0.8108 7 6 3.3928 -2.6350 1.7499 8 6 3.2118 -2.3896 3.0965 9 6 2.4517 -1.3086 3.5080 10 6 2.2628 -1.0425 4.9792 11 7 1.0706 -1.7559 5.4566 12 6 1.1301 -3.1948 5.0930 13 6 0.1357 -3.8520 6.0828 14 1 -0.8910 -3.7385 5.7346 15 9 0.4457 -5.2031 6.2721 16 6 0.3636 -3.0507 7.3850 17 6 0.9848 -1.7163 6.9326 18 6 0.1123 -0.5662 7.3654 19 7 -0.3440 0.2533 6.4954 20 14 -0.3028 -0.3374 9.1722 21 1 0.3440 -1.4109 9.9687 22 1 0.1932 0.9854 9.6304 23 1 -1.7751 -0.4040 9.3543 24 6 1.8612 -0.4732 2.5764 25 6 2.0312 -0.7114 1.2280 26 1 -0.3633 0.5130 0.8905 27 1 -0.3633 0.5147 -0.8895 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1298 1.4426 -0.0005 30 1 1.6756 1.9566 -0.8895 31 1 1.6771 1.9560 0.8905 32 1 3.3227 -2.5343 -2.5559 33 1 3.9881 -3.4763 1.4272 34 1 3.6662 -3.0398 3.8293 35 1 3.1382 -1.3909 5.5269 36 1 2.1348 0.0278 5.1414 37 1 0.8045 -3.3452 4.0637 38 1 2.1361 -3.5876 5.2407 39 1 1.0503 -3.5842 8.0422 40 1 -0.5853 -2.8740 7.8914 41 1 1.9816 -1.6070 7.3597 42 1 -0.9059 0.9933 6.7739 43 1 1.2664 0.3662 2.9051 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237137184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:35 Heat of formation + Delta-G solvation = 134.607273 kcal Electronic energy + Delta-G solvation = -26022.477838 eV Core-core repulsion = 22185.704911 eV Total energy + Delta-G solvation = -3836.772927 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.71729 -41.59449 -40.18196 -37.67423 -36.07989 -34.23398 -32.91740 -32.59839 -31.08809 -30.85627 -30.31287 -28.14322 -26.70058 -24.91420 -24.03061 -22.85132 -22.17023 -20.77377 -20.47386 -18.05387 -18.03063 -17.34206 -17.17925 -17.12587 -16.37308 -16.06200 -15.68378 -15.59854 -15.42415 -15.38423 -15.24518 -15.11013 -15.00183 -14.76786 -14.39725 -14.10718 -13.80609 -13.56693 -13.45411 -13.11609 -13.08478 -12.91577 -12.78907 -12.64109 -12.41922 -12.40948 -12.09159 -11.96806 -11.84289 -11.43976 -11.35851 -10.74291 -10.54711 -10.12614 -10.03655 -9.67964 -9.64503 -6.45321 -2.82790 -0.55435 -0.37219 0.67605 0.85331 1.22243 1.52133 1.65349 1.89556 2.63198 2.87331 2.98844 3.06175 3.10565 3.23009 3.38965 3.45613 3.55932 3.56814 3.75838 3.83437 3.90563 4.01899 4.16096 4.22827 4.23735 4.28050 4.31541 4.38355 4.44618 4.47629 4.50274 4.63660 4.65874 4.73415 4.78216 4.85891 4.88572 4.93578 5.02261 5.04153 5.31182 5.38404 5.45115 5.59182 5.81780 6.52747 6.79363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.157 4.157 4 O -0.425 6.425 5 O -0.572 6.572 6 C 0.256 3.744 7 C -0.119 4.119 8 C -0.079 4.079 9 C -0.066 4.066 10 C 0.089 3.911 11 N -0.480 5.480 12 C 0.005 3.995 13 C 0.089 3.911 14 H 0.104 0.896 15 F -0.204 7.204 16 C -0.151 4.151 17 C 0.097 3.903 18 C -0.006 4.006 19 N -0.593 5.593 20 Si 0.921 3.079 21 H -0.231 1.231 22 H -0.242 1.242 23 H -0.239 1.239 24 C -0.065 4.065 25 C -0.065 4.065 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.353 0.647 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.334 0.666 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 1.534 9.556 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.092 3.908 3 C -0.214 4.214 4 O -0.365 6.365 5 O -0.405 6.405 6 C 0.240 3.760 7 C -0.137 4.137 8 C -0.097 4.097 9 C -0.067 4.067 10 C -0.038 4.038 11 N -0.204 5.204 12 C -0.123 4.123 13 C 0.052 3.948 14 H 0.122 0.878 15 F -0.184 7.184 16 C -0.191 4.191 17 C -0.012 4.012 18 C -0.256 4.256 19 N -0.205 5.205 20 Si 0.736 3.264 21 H -0.152 1.152 22 H -0.165 1.165 23 H -0.162 1.162 24 C -0.084 4.084 25 C -0.066 4.066 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.190 0.810 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.151 0.849 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.466 1.794 9.614 9.791 hybrid contribution 0.479 -0.175 -0.478 0.698 sum 0.013 1.619 9.137 9.279 Atomic orbital electron populations 1.22305 0.93651 1.02798 1.02608 1.19708 0.93820 0.91919 0.85314 1.22311 1.01938 0.94569 1.02613 1.94981 1.72023 1.47997 1.21526 1.93482 1.74107 1.48290 1.24572 1.30681 1.00235 0.95416 0.49622 1.21597 1.01589 1.01851 0.88647 1.21138 0.99465 0.98012 0.91127 1.20029 0.95910 0.94244 0.96477 1.21287 0.91661 1.01574 0.89308 1.64762 1.37074 1.09426 1.09115 1.23940 0.98996 0.88573 1.00808 1.22377 1.00732 0.76149 0.95564 0.87794 1.92852 1.94733 1.34708 1.96141 1.23031 1.03407 0.94560 0.98073 1.21625 0.98301 0.92806 0.88495 1.30203 0.95749 0.95293 1.04346 1.68163 1.07747 1.04383 1.40188 0.85812 0.82627 0.83104 0.74866 1.15236 1.16545 1.16225 1.20958 0.98685 1.00712 0.88013 1.22935 0.95773 0.92338 0.95557 0.91681 0.91370 0.92037 0.92062 0.91303 0.91780 0.81044 0.81582 0.82315 0.92513 0.87908 0.88428 0.91914 0.88586 0.89240 0.89595 0.84934 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.29 8.82 37.16 0.33 0.03 16 2 C 0.14 0.44 1.43 -91.86 -0.13 0.31 16 3 C -0.16 -0.26 8.83 37.16 0.33 0.07 16 4 O -0.42 -3.35 14.33 -56.57 -0.81 -4.16 16 5 O -0.57 -4.83 18.54 -56.57 -1.05 -5.88 16 6 C 0.26 0.54 10.28 -38.81 -0.40 0.14 16 7 C -0.12 0.17 10.09 -39.33 -0.40 -0.22 16 8 C -0.08 0.30 8.31 -39.58 -0.33 -0.03 16 9 C -0.07 0.23 4.61 -104.51 -0.48 -0.25 16 10 C 0.09 -0.38 5.18 -4.98 -0.03 -0.41 16 11 N -0.48 1.58 4.46 -225.38 -1.00 0.58 16 12 C 0.00 -0.02 4.76 -1.90 -0.01 -0.03 16 13 C 0.09 -0.23 4.87 -24.88 -0.12 -0.35 16 14 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 15 F -0.20 0.00 17.19 2.25 0.04 0.04 16 16 C -0.15 0.59 5.81 -25.38 -0.15 0.44 16 17 C 0.10 -0.38 2.54 -67.79 -0.17 -0.56 16 18 C -0.01 0.02 5.28 -13.90 -0.07 -0.05 16 19 N -0.59 1.27 13.13 56.22 0.74 2.01 16 20 Si 0.92 -3.32 28.01 -169.99 -4.76 -8.09 16 21 H -0.23 0.83 7.11 56.52 0.40 1.23 16 22 H -0.24 0.59 7.11 56.52 0.40 0.99 16 23 H -0.24 0.56 7.11 56.52 0.40 0.96 16 24 C -0.07 0.14 9.68 -39.63 -0.38 -0.24 16 25 C -0.07 -0.05 4.82 -104.35 -0.50 -0.55 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.35 2.04 9.30 45.56 0.42 2.46 16 33 H 0.17 -0.43 8.06 -52.49 -0.42 -0.85 16 34 H 0.16 -1.01 7.35 -52.49 -0.39 -1.40 16 35 H 0.06 -0.32 7.75 -51.94 -0.40 -0.72 16 36 H 0.10 -0.41 8.08 -51.93 -0.42 -0.83 16 37 H 0.10 -0.27 7.73 -51.93 -0.40 -0.67 16 38 H 0.06 -0.27 7.06 -51.93 -0.37 -0.64 16 39 H 0.10 -0.44 8.12 -51.93 -0.42 -0.86 16 40 H 0.09 -0.40 6.61 -51.93 -0.34 -0.74 16 41 H 0.09 -0.48 7.57 -51.93 -0.39 -0.87 16 42 H 0.33 -1.09 8.23 -40.82 -0.34 -1.42 16 43 H 0.16 -0.56 8.06 -52.49 -0.42 -0.98 16 LS Contribution 363.21 15.07 5.47 5.47 Total: 0.00 -9.24 363.21 -9.54 -18.78 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -5.65 Total: -7.06 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.52 Total: -1.69 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -0.27 Total: 2.59 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.86 Total: -10.04 kcal Atomic # 9 Polarization: 0.00 SS G_CDS: 0.04 Total: 0.04 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: -4.76 Total: -8.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.24 -9.54 -18.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237137184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.384 kcal (2) G-P(sol) polarization free energy of solvation -9.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds