Wall clock time and date at job start Tue Mar 31 2020 12:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37965 * 119.62746 * 2 1 4 4 C 1.37971 * 120.12514 * 180.02562 * 3 2 1 5 5 C 1.39463 * 119.72430 * 0.14699 * 4 3 2 6 6 C 1.47741 * 119.91720 * 179.90547 * 5 4 3 7 7 O 1.21467 * 119.99932 * 179.97438 * 6 5 4 8 8 O 1.34714 * 120.00081 * 0.02562 * 6 5 4 9 9 C 1.39967 * 120.16782 * 359.88273 * 5 4 3 10 10 C 1.38151 * 119.76240 * 359.61400 * 9 5 4 11 11 N 1.39465 * 122.91980 * 180.52602 * 10 9 5 12 12 C 1.46892 * 110.79067 * 105.50327 * 11 10 9 13 13 C 1.53005 * 109.47205 * 166.09761 * 12 11 10 14 14 O 1.42896 * 109.46908 * 76.60017 * 13 12 11 15 15 C 1.42906 * 114.00135 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47404 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00160 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99544 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00397 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46917 * 89.99503 * 20 18 16 22 22 H 1.48498 * 109.47130 * 209.99867 * 20 18 16 23 23 H 1.48497 * 109.46780 * 330.00027 * 20 18 16 24 24 C 1.46424 * 113.20389 * 340.06403 * 11 10 9 25 25 C 1.53378 * 108.65457 * 53.23203 * 24 11 10 26 26 C 1.50781 * 118.15531 * 179.66491 * 9 5 4 27 27 H 1.08990 * 109.46858 * 83.90741 * 1 2 3 28 28 H 1.08995 * 109.46817 * 323.90225 * 1 2 3 29 29 H 1.09001 * 109.46801 * 203.90473 * 1 2 3 30 30 H 1.07996 * 119.93662 * 0.07067 * 3 2 1 31 31 H 1.08005 * 120.13814 * 180.12098 * 4 3 2 32 32 H 0.96702 * 117.00048 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47260 * 286.09796 * 12 11 10 34 34 H 1.09000 * 109.47294 * 46.10335 * 12 11 10 35 35 H 1.09003 * 109.47225 * 196.60138 * 13 12 11 36 36 H 1.08996 * 109.46998 * 316.60117 * 13 12 11 37 37 H 1.09008 * 109.46606 * 300.00025 * 15 14 13 38 38 H 1.09001 * 109.46931 * 59.99717 * 15 14 13 39 39 H 0.97005 * 119.99763 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.60446 * 293.47620 * 24 11 10 41 41 H 1.09002 * 109.74318 * 173.06710 * 24 11 10 42 42 H 1.08993 * 109.77164 * 172.25899 * 25 24 11 43 43 H 1.08997 * 109.81505 * 51.48739 * 25 24 11 44 44 H 1.08996 * 109.43805 * 284.51294 * 26 9 5 45 45 H 1.09002 * 109.43098 * 44.38991 * 26 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1891 1.1993 0.0000 4 6 3.5688 1.2113 -0.0005 5 6 4.2708 0.0062 -0.0042 6 6 5.7481 0.0141 -0.0069 7 8 6.3611 -1.0346 -0.0096 8 8 6.4155 1.1843 -0.0053 9 6 3.5792 -1.2107 -0.0048 10 6 2.1977 -1.2144 0.0063 11 7 1.4430 -2.3871 0.0171 12 6 0.8628 -2.6215 1.3461 13 6 -0.2208 -3.6971 1.2471 14 8 0.3930 -4.9830 1.1384 15 6 -0.5362 -6.0641 1.0391 16 6 0.2165 -7.3651 0.9306 17 1 1.2965 -7.3662 0.9364 18 6 -0.4735 -8.5539 0.8228 19 7 -1.7886 -8.5525 0.8152 20 14 0.4596 -10.1665 0.6875 21 1 0.6987 -10.7155 2.0464 22 1 -0.3395 -11.1358 -0.1045 23 1 1.7612 -9.9301 0.0130 24 6 2.1909 -3.5588 -0.4430 25 6 3.4867 -3.6643 0.3709 26 6 4.3834 -2.4861 -0.0166 27 1 -0.3633 0.1091 -1.0218 28 1 -0.3633 0.8303 0.6054 29 1 -0.3633 -0.9395 0.4164 30 1 1.6420 2.1304 0.0012 31 1 4.1029 2.1500 0.0014 32 1 7.3815 1.1388 -0.0076 33 1 1.6436 -2.9543 2.0299 34 1 0.4232 -1.6963 1.7190 35 1 -0.8455 -3.6669 2.1398 36 1 -0.8363 -3.5128 0.3666 37 1 -1.1677 -6.0831 1.9274 38 1 -1.1580 -5.9287 0.1541 39 1 -2.2741 -9.3889 0.7397 40 1 2.4310 -3.4474 -1.5003 41 1 1.5928 -4.4583 -0.2966 42 1 3.9912 -4.6027 0.1408 43 1 3.2588 -3.6196 1.4358 44 1 4.7875 -2.6509 -1.0153 45 1 5.2034 -2.4043 0.6970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607736310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:29 Heat of formation + Delta-G solvation = -104.720408 kcal Electronic energy + Delta-G solvation = -27366.975694 eV Core-core repulsion = 23542.370384 eV Total energy + Delta-G solvation = -3824.605311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20836 -39.91884 -37.55559 -36.48921 -36.16438 -34.41464 -32.77653 -31.48961 -30.42703 -29.32504 -27.62149 -26.85606 -24.60790 -23.59415 -22.98161 -22.34506 -21.99714 -20.60365 -19.31322 -18.16854 -17.37167 -16.44319 -16.42285 -16.16017 -15.85719 -15.38919 -15.07927 -14.90818 -14.43445 -14.25636 -14.10652 -13.87082 -13.51288 -13.31580 -13.10536 -12.95837 -12.72103 -12.40644 -12.04834 -11.99546 -11.79955 -11.71462 -11.54584 -11.38236 -11.16610 -10.97773 -10.84355 -10.77152 -10.65602 -10.42275 -10.12284 -9.96448 -9.21548 -9.12875 -8.82078 -8.81813 -8.18944 -7.82758 -6.13673 -4.15586 0.54721 1.21672 2.37642 2.81491 3.28698 3.34196 3.38984 3.52970 3.92093 4.31887 4.57753 4.71164 4.74214 4.82169 4.93030 5.07831 5.18898 5.23247 5.31201 5.38279 5.40162 5.45695 5.56854 5.62453 5.65479 5.78354 5.82188 5.92142 5.93534 5.99888 6.08582 6.11445 6.17478 6.19351 6.29448 6.37626 6.43356 6.56202 6.65094 6.69970 7.07455 7.15194 7.39864 7.48470 7.71084 7.75926 8.11646 8.51238 8.97162 9.49569 10.97716 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.003176 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.227249 B = 8815.028681 C =10103.720059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.049 4.049 3 C -0.132 4.132 4 C -0.074 4.074 5 C -0.130 4.130 6 C 0.524 3.476 7 O -0.508 6.508 8 O -0.516 6.516 9 C -0.045 4.045 10 C 0.103 3.897 11 N -0.488 5.488 12 C 0.056 3.944 13 C 0.062 3.938 14 O -0.392 6.392 15 C 0.195 3.805 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.039 3.961 25 C -0.154 4.154 26 C -0.086 4.086 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.411 0.589 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.005 0.995 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 21.957 -1.317 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.051 4.051 3 C -0.150 4.150 4 C -0.093 4.093 5 C -0.132 4.132 6 C 0.370 3.630 7 O -0.398 6.398 8 O -0.328 6.328 9 C -0.049 4.049 10 C 0.006 3.994 11 N -0.204 5.204 12 C -0.069 4.069 13 C -0.015 4.015 14 O -0.313 6.313 15 C 0.121 3.879 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.087 4.087 25 C -0.192 4.192 26 C -0.123 4.123 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.270 0.730 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.851 21.531 -1.644 23.338 hybrid contribution 1.389 -0.892 0.317 1.681 sum 10.241 20.639 -1.327 23.079 Atomic orbital electron populations 1.20978 0.90355 1.03636 1.02865 1.20183 0.96836 0.91428 0.96642 1.20817 0.93750 0.97545 1.02923 1.21253 0.94256 0.97007 0.96808 1.18767 0.88476 0.94315 1.11609 1.21008 0.89008 0.80780 0.72226 1.90871 1.70116 1.32617 1.46170 1.84559 1.26747 1.35353 1.86098 1.20141 0.93167 0.94578 0.96968 1.18382 0.89277 0.91361 1.00408 1.58898 1.34024 1.02046 1.25465 1.22422 0.97821 0.98485 0.88181 1.22298 0.94120 0.85222 0.99903 1.87803 1.35570 1.13734 1.94161 1.20198 0.88732 0.83579 0.95364 1.21034 0.93989 0.89808 1.50475 0.91578 1.24939 0.94950 0.99389 0.95153 1.69960 1.06087 1.27373 1.50263 0.86363 0.79708 0.82415 0.78174 1.20506 1.21097 1.19600 1.22662 0.93928 0.94062 0.98025 1.22177 0.97388 0.98479 1.01192 1.20943 0.97507 0.90333 1.03483 0.90615 0.91774 0.89609 0.85180 0.84783 0.73014 0.92699 0.89549 0.93641 0.93113 0.97765 0.97577 0.92645 0.91238 0.85302 0.90310 0.91308 0.90160 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.35 36.01 0.34 -0.86 16 2 C -0.05 -0.56 5.66 -104.17 -0.59 -1.15 16 3 C -0.13 -1.28 9.67 -39.78 -0.38 -1.67 16 4 C -0.07 -0.75 9.61 -39.22 -0.38 -1.13 16 5 C -0.13 -1.59 5.88 -104.91 -0.62 -2.21 16 6 C 0.52 6.14 8.22 34.61 0.28 6.43 16 7 O -0.51 -7.13 13.87 -19.24 -0.27 -7.39 16 8 O -0.52 -4.23 12.66 -40.53 -0.51 -4.74 16 9 C -0.05 -0.62 5.78 -103.97 -0.60 -1.22 16 10 C 0.10 1.40 5.10 -83.87 -0.43 0.97 16 11 N -0.49 -7.21 3.83 -171.32 -0.66 -7.86 16 12 C 0.06 0.81 4.30 -3.83 -0.02 0.79 16 13 C 0.06 1.08 5.98 37.16 0.22 1.30 16 14 O -0.39 -8.69 7.60 -35.23 -0.27 -8.96 16 15 C 0.20 5.12 5.69 36.00 0.20 5.32 16 16 C -0.51 -14.64 9.43 -34.44 -0.32 -14.97 16 17 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 20 Si 0.91 21.56 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.04 0.64 5.59 -3.89 -0.02 0.61 16 25 C -0.15 -2.33 6.03 -26.51 -0.16 -2.49 16 26 C -0.09 -1.23 4.31 -27.82 -0.12 -1.35 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.09 0.93 4.86 -51.93 -0.25 0.68 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.09 7.59 -52.48 -0.40 0.69 16 32 H 0.41 1.53 9.11 45.56 0.42 1.95 16 33 H 0.05 0.86 6.30 -51.93 -0.33 0.53 16 34 H 0.09 1.06 5.84 -51.93 -0.30 0.75 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.00 0.12 8.14 -51.92 -0.42 -0.30 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 41 H 0.13 2.47 5.04 -51.93 -0.26 2.21 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 44 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 45 H 0.10 1.46 6.04 -51.93 -0.31 1.15 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.98 356.58 -8.84 -40.81 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.53 Total: 2.04 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.69 Total: -10.10 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.08 Total: -33.57 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.05 Total: -21.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.98 -8.84 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607736310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.907 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds