Wall clock time and date at job start Tue Mar 31 2020 12:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.54367 * 2 1 4 4 C 1.34776 * 119.99928 * 59.82093 * 3 2 1 5 5 O 1.21274 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99802 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47362 * 180.02562 * 6 4 3 8 8 C 1.38324 * 119.96092 * 269.95531 * 7 6 4 9 9 C 1.38279 * 120.13595 * 179.97438 * 8 7 6 10 10 C 1.38121 * 120.06860 * 0.04338 * 9 8 7 11 11 C 1.38860 * 119.93300 * 359.97438 * 10 9 8 12 12 O 1.35754 * 120.07146 * 179.97438 * 11 10 9 13 13 C 1.34826 * 116.99650 * 354.47785 * 12 11 10 14 14 H 1.07998 * 120.00391 * 5.06660 * 13 12 11 15 15 C 1.38661 * 119.99413 * 185.05921 * 13 12 11 16 16 N 1.31556 * 119.99325 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00167 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46809 * 90.00278 * 17 15 13 19 19 H 1.48500 * 109.47104 * 209.99903 * 17 15 13 20 20 H 1.48500 * 109.47229 * 330.00070 * 17 15 13 21 21 C 1.38071 * 119.96609 * 89.99440 * 7 6 4 22 22 C 1.53179 * 109.61524 * 120.22247 * 2 1 3 23 23 C 1.53090 * 109.16487 * 176.89068 * 22 2 1 24 24 O 1.42905 * 109.41270 * 302.39547 * 23 22 2 25 25 C 1.42900 * 114.10110 * 61.15444 * 24 23 22 26 26 C 1.53093 * 109.41494 * 298.84254 * 25 24 23 27 27 H 1.09001 * 109.47046 * 60.00012 * 1 2 3 28 28 H 1.08994 * 109.47441 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47068 * 300.00323 * 1 2 3 30 30 H 0.96995 * 119.99950 * 239.82609 * 3 2 1 31 31 H 1.09004 * 109.47198 * 59.99971 * 6 4 3 32 32 H 1.09004 * 109.47444 * 300.00171 * 6 4 3 33 33 H 1.07994 * 119.93583 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.96570 * 180.02562 * 9 8 7 35 35 H 1.08005 * 120.03769 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99538 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.03508 * 0.25923 * 21 7 6 38 38 H 1.09002 * 109.51981 * 296.79593 * 22 2 1 39 39 H 1.09000 * 109.52332 * 56.98037 * 22 2 1 40 40 H 1.08993 * 109.48446 * 182.40286 * 23 22 2 41 41 H 1.09008 * 109.48582 * 62.37389 * 23 22 2 42 42 H 1.09004 * 109.47669 * 178.86237 * 25 24 23 43 43 H 1.08992 * 109.48909 * 58.83133 * 25 24 23 44 44 H 1.09000 * 109.52241 * 297.70395 * 26 25 24 45 45 H 1.08995 * 109.52445 * 177.51824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0201 1.3806 0.0000 4 6 1.6926 2.2119 1.0090 5 8 0.9918 1.8172 1.9167 6 6 2.1963 3.6322 1.0087 7 6 1.6919 4.3444 2.2373 8 6 0.4843 5.0179 2.1985 9 6 0.0178 5.6722 3.3238 10 6 0.7572 5.6557 4.4903 11 6 1.9701 4.9808 4.5323 12 8 2.6994 4.9633 5.6772 13 6 2.2481 5.7142 6.7020 14 1 1.3022 6.2288 6.6188 15 6 2.9983 5.8256 7.8627 16 7 2.5577 6.5579 8.8629 17 14 4.6345 4.9359 8.0064 18 1 5.7227 5.8184 7.5141 19 1 4.8851 4.5869 9.4279 20 1 4.5965 3.6951 7.1914 21 6 2.4360 4.3247 3.4002 22 6 2.0443 -0.7263 1.2468 23 6 3.5731 -0.7884 1.1975 24 8 3.9833 -1.4477 -0.0022 25 6 3.5714 -0.7877 -1.2008 26 6 2.0424 -0.7256 -1.2479 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.5802 1.6964 -0.7262 31 1 1.8358 4.1454 0.1171 32 1 3.2863 3.6313 1.0115 33 1 -0.0958 5.0322 1.2877 34 1 -0.9257 6.1968 3.2905 35 1 0.3926 6.1673 5.3688 36 1 3.0826 6.6362 9.6748 37 1 3.3810 3.8027 3.4284 38 1 1.7303 -0.1848 2.1392 39 1 1.6392 -1.7379 1.2721 40 1 3.9425 -1.3415 2.0609 41 1 3.9788 0.2233 1.2132 42 1 3.9395 -1.3406 -2.0651 43 1 3.9769 0.2239 -1.2167 44 1 1.6374 -1.7373 -1.2730 45 1 1.7271 -0.1839 -2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089832003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:04 Heat of formation + Delta-G solvation = -110.076900 kcal Electronic energy + Delta-G solvation = -27056.326762 eV Core-core repulsion = 23231.489176 eV Total energy + Delta-G solvation = -3824.837586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74898 -40.87121 -39.63863 -38.28299 -36.48665 -34.49292 -33.83557 -32.61434 -32.12091 -31.05148 -29.37191 -28.36177 -27.17123 -24.68204 -24.09097 -23.40414 -22.85009 -21.60051 -20.29634 -19.66580 -18.92380 -18.15014 -17.23561 -16.99352 -16.87496 -16.77106 -16.54065 -16.07912 -15.79206 -15.66515 -15.49935 -15.15912 -14.97135 -14.65067 -14.40536 -14.15991 -13.99319 -13.71741 -13.62470 -13.29487 -13.03783 -13.03615 -12.90265 -12.63388 -12.51706 -12.43672 -12.33594 -12.27490 -11.93770 -11.63847 -11.38681 -11.31786 -10.92542 -10.70909 -10.48710 -9.95701 -9.65754 -9.06344 -8.51390 -6.24079 0.49138 0.70310 1.28620 1.33211 1.49881 1.75014 2.22163 2.26729 2.78148 2.94909 3.05031 3.14621 3.57566 3.78749 3.80902 3.86779 4.01605 4.07167 4.12129 4.24751 4.30135 4.41235 4.43769 4.54920 4.64201 4.66541 4.70783 4.71266 4.72390 4.77112 4.80419 4.94603 4.97242 5.08484 5.12915 5.15226 5.25149 5.34015 5.38966 5.64300 5.65191 5.72876 5.76389 5.91213 6.24566 6.25154 6.67157 6.83062 7.39687 7.58310 8.60639 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.003203 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.195940 B = 8739.872649 C = 9865.303514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 N -0.712 5.712 4 C 0.516 3.484 5 O -0.563 6.563 6 C -0.093 4.093 7 C -0.025 4.025 8 C -0.170 4.170 9 C -0.078 4.078 10 C -0.241 4.241 11 C 0.119 3.881 12 O -0.248 6.248 13 C -0.400 4.400 14 H 0.079 0.921 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.267 1.267 21 C -0.181 4.181 22 C -0.167 4.167 23 C 0.067 3.933 24 O -0.399 6.399 25 C 0.051 3.949 26 C -0.147 4.147 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.415 0.585 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -13.355 -27.641 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 N -0.367 5.367 4 C 0.303 3.697 5 O -0.441 6.441 6 C -0.132 4.132 7 C -0.025 4.025 8 C -0.188 4.188 9 C -0.096 4.096 10 C -0.261 4.261 11 C 0.070 3.930 12 O -0.155 6.155 13 C -0.476 4.476 14 H 0.097 0.903 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.793 3.207 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.192 1.192 21 C -0.200 4.200 22 C -0.205 4.205 23 C -0.010 4.010 24 O -0.319 6.319 25 C -0.025 4.025 26 C -0.185 4.185 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.252 0.748 31 H 0.159 0.841 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.819 -13.854 -26.743 30.129 hybrid contribution 0.155 0.524 1.021 1.158 sum 0.974 -13.330 -25.722 28.987 Atomic orbital electron populations 1.22137 0.94280 1.02661 1.02563 1.20319 0.94162 0.81054 0.95485 1.46016 1.53913 1.11234 1.25542 1.20805 0.79612 0.87872 0.81364 1.90718 1.38588 1.77623 1.37165 1.20726 1.03911 0.91191 0.97386 1.19203 0.94059 0.95833 0.93453 1.20993 0.96900 1.01754 0.99166 1.21104 0.98973 0.97788 0.91778 1.21310 0.97284 1.07106 1.00375 1.19603 0.91340 0.95450 0.86600 1.83506 1.49444 1.62827 1.19766 1.20713 1.06791 1.27130 0.92978 0.90326 1.25281 1.02779 0.97186 0.93594 1.69732 1.40864 1.39965 1.06004 0.85222 0.78166 0.79390 0.77946 1.18601 1.19061 1.19159 1.20262 1.02629 1.05826 0.91290 1.22558 0.96912 1.01344 0.99701 1.22456 0.93507 0.97328 0.87668 1.87922 1.77372 1.52081 1.14483 1.22845 0.93601 0.98584 0.87500 1.22459 0.96876 1.02232 0.96915 0.91186 0.91150 0.93341 0.74760 0.84099 0.85909 0.83475 0.84342 0.87671 0.90552 0.86161 0.91636 0.90373 0.89357 0.93355 0.86736 0.91966 0.89234 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.42 71.98 0.61 -2.16 16 2 C 0.18 2.72 0.66 3.72 0.00 2.72 16 3 N -0.71 -10.12 4.23 -422.39 -1.79 -11.90 16 4 C 0.52 11.49 7.24 87.66 0.63 12.12 16 5 O -0.56 -18.58 12.25 -3.01 -0.04 -18.62 16 6 C -0.09 -1.77 5.83 29.10 0.17 -1.60 16 7 C -0.02 -0.78 4.37 -19.88 -0.09 -0.87 16 8 C -0.17 -5.26 9.70 22.30 0.22 -5.04 16 9 C -0.08 -2.87 10.04 22.25 0.22 -2.64 16 10 C -0.24 -11.30 9.17 22.39 0.21 -11.09 16 11 C 0.12 5.89 6.65 22.58 0.15 6.04 16 12 O -0.25 -14.15 8.59 -22.75 -0.20 -14.35 16 13 C -0.40 -24.57 9.95 67.92 0.68 -23.90 16 14 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 15 C 0.01 0.58 5.49 84.84 0.47 1.04 16 16 N -0.92 -56.79 13.96 21.62 0.30 -56.49 16 17 Si 0.97 46.93 28.62 68.60 1.96 48.90 16 18 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 21 C -0.18 -7.30 9.64 22.39 0.22 -7.09 16 22 C -0.17 -3.46 4.77 30.68 0.15 -3.31 16 23 C 0.07 1.32 6.68 72.01 0.48 1.80 16 24 O -0.40 -7.26 10.77 -148.98 -1.60 -8.86 16 25 C 0.05 0.51 6.67 72.01 0.48 0.99 16 26 C -0.15 -1.33 4.96 30.68 0.15 -1.17 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.22 6.16 -2.39 -0.01 1.21 16 30 H 0.41 2.89 7.52 -92.71 -0.70 2.20 16 31 H 0.14 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 36 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.06 1.85 6.14 -2.39 -0.01 1.84 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 0.96 7.75 -2.38 -0.02 0.94 16 42 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 0.47 7.09 -2.39 -0.02 0.45 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -79.12 361.36 3.69 -75.42 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.31 Total: 20.06 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 4.74 Total: -34.15 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.48 Total: -68.40 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.84 Total: -41.83 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.96 Total: 48.90 kcal Total: -79.12 3.69 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089832003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds