Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 N 1.46501 * 109.46911 * 299.99429 * 3 2 1 5 5 S 1.65601 * 119.99896 * 165.00334 * 4 3 2 6 6 O 1.42106 * 104.27523 * 308.93045 * 5 4 3 7 7 O 1.42101 * 104.27548 * 181.07477 * 5 4 3 8 8 C 1.81394 * 104.44791 * 65.00195 * 5 4 3 9 9 C 1.53006 * 109.46950 * 179.97438 * 8 5 4 10 10 C 1.52999 * 109.47212 * 179.97438 * 9 8 5 11 11 C 1.50696 * 109.47110 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00012 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99842 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00069 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 90.00621 * 15 13 11 17 17 H 1.48503 * 109.47399 * 210.00111 * 15 13 11 18 18 H 1.48498 * 109.47295 * 330.00717 * 15 13 11 19 19 C 1.53001 * 109.47371 * 239.99522 * 2 1 3 20 20 C 1.52996 * 109.46942 * 300.00396 * 19 2 1 21 21 C 1.53002 * 109.47075 * 299.99330 * 20 19 2 22 22 C 1.53001 * 109.46688 * 60.00515 * 21 20 19 23 23 C 1.52997 * 109.47273 * 299.99381 * 22 21 20 24 24 H 1.09000 * 109.47382 * 179.97438 * 23 22 21 25 25 O 1.42901 * 109.47556 * 300.00639 * 23 22 21 26 26 H 1.08997 * 109.47244 * 60.00168 * 1 2 3 27 27 H 1.09005 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46893 * 300.00372 * 1 2 3 29 29 H 1.09000 * 109.46969 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47289 * 59.99923 * 3 2 1 31 31 H 0.97002 * 120.00171 * 345.00751 * 4 3 2 32 32 H 1.08997 * 109.47487 * 60.00217 * 8 5 4 33 33 H 1.09000 * 109.47199 * 299.99820 * 8 5 4 34 34 H 1.09005 * 109.46555 * 60.00181 * 9 8 5 35 35 H 1.08996 * 109.47213 * 300.00774 * 9 8 5 36 36 H 1.09008 * 109.46748 * 60.00264 * 10 9 8 37 37 H 1.08991 * 109.47440 * 300.00468 * 10 9 8 38 38 H 0.97000 * 119.99838 * 359.97438 * 14 13 11 39 39 H 1.08997 * 109.46683 * 59.99966 * 19 2 1 40 40 H 1.09000 * 109.47479 * 179.97438 * 19 2 1 41 41 H 1.09008 * 109.46913 * 179.97438 * 20 19 2 42 42 H 1.09000 * 109.47425 * 59.99487 * 20 19 2 43 43 H 1.09000 * 109.47122 * 300.00342 * 21 20 19 44 44 H 1.08995 * 109.47257 * 180.02562 * 21 20 19 45 45 H 1.09005 * 109.47007 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47479 * 60.00046 * 22 21 20 47 47 H 0.96694 * 113.99523 * 300.00010 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1331 -1.1963 5 16 1.6257 3.7849 -1.2869 6 8 1.0210 4.2295 -0.0802 7 8 1.0524 4.0925 -2.5503 8 6 3.4006 4.1593 -1.2851 9 6 3.6024 5.6737 -1.3672 10 6 5.0995 5.9896 -1.3651 11 6 5.2983 7.4811 -1.4465 12 1 4.4425 8.1381 -1.4946 13 6 6.5728 8.0070 -1.4597 14 7 7.6149 7.2069 -1.4017 15 14 6.8192 9.8560 -1.5600 16 1 6.8668 10.4240 -0.1888 17 1 8.0952 10.1481 -2.2613 18 1 5.6915 10.4657 -2.3095 19 6 2.0400 -0.7213 -1.2492 20 6 1.5300 -2.1638 -1.2491 21 6 2.0400 -2.8850 0.0002 22 6 1.5300 -2.1637 1.2494 23 6 2.0400 -0.7212 1.2494 24 1 1.6763 -0.2072 2.1391 25 8 3.4690 -0.7212 1.2494 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 0.8899 31 1 1.1850 1.6227 -1.9352 32 1 3.8732 3.6831 -2.1441 33 1 3.8506 3.7816 -0.3670 34 1 3.1297 6.1503 -0.5084 35 1 3.1523 6.0510 -2.2854 36 1 5.5726 5.5129 -2.2237 37 1 5.5491 5.6123 -0.4467 38 1 7.4869 6.2468 -1.3493 39 1 1.6767 -0.2076 -2.1391 40 1 3.1301 -0.7210 -1.2494 41 1 1.8930 -2.6776 -2.1393 42 1 0.4400 -2.1638 -1.2491 43 1 3.1300 -2.8850 0.0002 44 1 1.6770 -3.9127 0.0001 45 1 1.8929 -2.6777 2.1394 46 1 0.4400 -2.1637 1.2494 47 1 3.8623 -1.1629 2.0144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124830691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = -163.216690 kcal Electronic energy + Delta-G solvation = -25956.291482 eV Core-core repulsion = 22264.593534 eV Total energy + Delta-G solvation = -3691.697949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.46655 -36.92106 -36.23436 -35.75405 -35.04353 -34.89373 -32.25977 -31.79944 -30.42779 -27.45431 -27.03039 -25.61433 -23.44719 -23.02671 -21.59904 -20.97235 -19.20637 -18.77740 -17.66104 -17.27163 -16.97029 -16.51327 -15.91669 -15.65451 -15.40514 -15.10564 -14.79411 -14.17123 -14.12602 -13.74397 -13.56906 -13.28594 -13.23762 -12.92343 -12.66964 -12.28912 -12.11394 -12.02812 -11.99118 -11.92034 -11.86543 -11.81291 -11.57354 -11.41756 -11.34938 -10.99330 -10.79070 -10.73740 -10.55861 -10.33026 -10.12786 -10.07075 -10.02376 -9.84295 -9.36990 -8.56286 -8.34860 -6.38998 -4.08602 0.45873 2.85373 3.44248 3.47937 3.63826 3.80406 3.91814 4.17227 4.29211 4.40434 4.49150 4.53432 4.65615 4.72855 4.87507 4.93274 5.01164 5.07149 5.14805 5.17052 5.26748 5.29575 5.33904 5.39081 5.43947 5.48605 5.61225 5.65194 5.75072 5.77349 5.81157 5.85099 5.88476 5.94353 6.03821 6.18178 6.20482 6.35075 6.74415 6.91026 7.29589 7.34628 7.41521 8.15780 8.43789 8.85185 9.63724 11.01874 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.002774 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.838540 B =10091.278740 C =10814.816517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C 0.126 3.874 4 N -1.123 6.123 5 S 2.604 3.396 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.612 4.612 9 C -0.098 4.098 10 C 0.017 3.983 11 C -0.607 4.607 12 H 0.052 0.948 13 C 0.015 3.985 14 N -0.913 5.913 15 Si 1.072 2.928 16 H -0.287 1.287 17 H -0.284 1.284 18 H -0.288 1.288 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.153 4.153 23 C 0.115 3.885 24 H 0.058 0.942 25 O -0.559 6.559 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.413 0.587 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.269 0.731 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -23.435 4.777 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 C 0.000 4.000 4 N -0.883 5.883 5 S 2.699 3.301 6 O -0.952 6.952 7 O -0.955 6.955 8 C -0.744 4.744 9 C -0.138 4.138 10 C -0.021 4.021 11 C -0.645 4.645 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.549 5.549 15 Si 0.900 3.100 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.214 1.214 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.191 4.191 23 C 0.056 3.944 24 H 0.076 0.924 25 O -0.365 6.365 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.248 0.752 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.987 -21.254 4.279 25.273 hybrid contribution -0.564 -2.094 0.349 2.197 sum -13.551 -23.349 4.627 27.390 Atomic orbital electron populations 1.21992 0.93371 1.02199 1.02978 1.20657 0.95883 0.93849 0.95229 1.21327 0.99262 0.92283 0.87178 1.55723 1.79114 1.26801 1.26616 1.05158 0.78234 0.72526 0.74140 1.93564 1.74051 1.79844 1.47755 1.93576 1.76156 1.82469 1.43287 1.30567 1.24038 1.08604 1.11162 1.21351 1.03222 0.87105 1.02087 1.19184 0.88873 0.97603 0.96447 1.22100 0.95010 0.91643 1.55739 0.92977 1.25888 0.92240 1.07076 0.93659 1.70763 1.31994 1.05645 1.46489 0.83499 0.75685 0.73961 0.76820 1.21369 1.20949 1.21367 1.21554 1.01908 0.94875 0.96225 1.21578 1.00725 0.95714 0.97842 1.21432 1.01510 0.98198 0.94094 1.22281 1.01841 0.96256 0.98693 1.21715 0.81252 0.94528 0.96936 0.92390 1.86527 1.18987 1.81252 1.49696 0.91658 0.91705 0.92089 0.90657 0.90342 0.75206 0.85374 0.85545 0.91453 0.91457 0.97040 0.97027 0.92105 0.91905 0.90532 0.91973 0.91843 0.91273 0.92387 0.91748 0.90719 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.61 37.16 0.28 -0.83 16 2 C -0.05 -0.44 0.37 -154.50 -0.06 -0.50 16 3 C 0.13 1.28 4.88 -4.04 -0.02 1.26 16 4 N -1.12 -12.36 5.22 -10.61 -0.06 -12.42 16 5 S 2.60 38.98 5.46 -107.50 -0.59 38.40 16 6 O -0.96 -17.13 17.50 -57.54 -1.01 -18.13 16 7 O -0.96 -17.21 18.08 -57.54 -1.04 -18.25 16 8 C -0.61 -9.73 6.07 37.16 0.23 -9.51 16 9 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 10 C 0.02 0.44 4.28 -27.89 -0.12 0.32 16 11 C -0.61 -17.59 9.11 -34.44 -0.31 -17.91 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 14 N -0.91 -28.15 13.65 55.43 0.76 -27.39 16 15 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.11 -0.86 4.41 -26.73 -0.12 -0.98 16 20 C -0.12 -0.81 5.65 -26.73 -0.15 -0.96 16 21 C -0.11 -0.71 5.78 -26.73 -0.15 -0.86 16 22 C -0.15 -0.86 5.36 -26.73 -0.14 -1.01 16 23 C 0.12 0.81 2.74 -26.73 -0.07 0.74 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 O -0.56 -4.27 11.30 -35.23 -0.40 -4.67 16 26 H 0.06 0.51 7.19 -51.93 -0.37 0.14 16 27 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 31 H 0.41 3.85 6.44 -34.47 -0.22 3.63 16 32 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.01 0.30 8.01 -51.92 -0.42 -0.12 16 37 H 0.01 0.30 8.01 -51.93 -0.42 -0.11 16 38 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 39 H 0.06 0.48 6.60 -51.93 -0.34 0.14 16 40 H 0.08 0.71 7.68 -51.93 -0.40 0.31 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 43 H 0.07 0.48 7.68 -51.93 -0.40 0.08 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 47 H 0.38 1.54 9.08 45.56 0.41 1.95 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -36.59 371.28 -9.87 -46.45 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.17 Total: 1.91 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: -0.88 Total: -32.08 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.70 Total: -39.81 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -2.44 Total: -41.06 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Atomic # 16 Polarization: 38.98 SS G_CDS: -0.59 Total: 38.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.59 -9.87 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124830691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.763 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds