Wall clock time and date at job start Tue Mar 31 2020 12:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 112.90910 * 2 1 4 4 C 1.53784 * 113.61271 * 228.74843 * 2 1 3 5 5 H 1.08992 * 113.61350 * 334.64997 * 4 2 1 6 6 O 1.42901 * 113.61544 * 105.47322 * 4 2 1 7 7 C 1.53783 * 87.08011 * 220.01877 * 4 2 1 8 8 C 1.53780 * 113.61354 * 131.24978 * 2 1 3 9 9 H 1.08994 * 113.61731 * 254.61131 * 8 2 1 10 10 N 1.46509 * 113.61462 * 25.43530 * 8 2 1 11 11 C 1.34773 * 119.99618 * 204.72285 * 10 8 2 12 12 O 1.21276 * 120.00476 * 0.27663 * 11 10 8 13 13 C 1.50704 * 119.99791 * 180.27077 * 11 10 8 14 14 C 1.50693 * 109.47153 * 180.02562 * 13 11 10 15 15 C 1.38327 * 119.96667 * 90.00267 * 14 13 11 16 16 C 1.38278 * 120.13849 * 180.02562 * 15 14 13 17 17 C 1.38126 * 120.06995 * 359.97438 * 16 15 14 18 18 C 1.38853 * 119.92752 * 0.02562 * 17 16 15 19 19 O 1.35757 * 120.06414 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00216 * 354.46515 * 19 18 17 21 21 H 1.08000 * 119.99740 * 5.05812 * 20 19 18 22 22 C 1.38646 * 119.99889 * 185.05291 * 20 19 18 23 23 N 1.31560 * 120.00222 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00388 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46779 * 89.99962 * 24 22 20 26 26 H 1.48493 * 109.47528 * 209.99669 * 24 22 20 27 27 H 1.48498 * 109.47015 * 330.00045 * 24 22 20 28 28 C 1.38083 * 119.96607 * 269.73081 * 14 13 11 29 29 H 1.09002 * 109.47358 * 288.74594 * 1 2 3 30 30 H 1.08995 * 109.47339 * 48.74715 * 1 2 3 31 31 H 1.08999 * 109.47412 * 168.75234 * 1 2 3 32 32 H 1.08994 * 109.47285 * 191.25211 * 3 2 1 33 33 H 1.08996 * 109.46907 * 311.25354 * 3 2 1 34 34 H 1.09000 * 109.46711 * 71.24880 * 3 2 1 35 35 H 0.96696 * 113.99973 * 180.02562 * 6 4 2 36 36 H 1.08996 * 113.61752 * 270.88382 * 7 4 2 37 37 H 1.09003 * 113.61416 * 139.97933 * 7 4 2 38 38 H 0.96995 * 119.99853 * 24.99415 * 10 8 2 39 39 H 1.08997 * 109.47081 * 300.00239 * 13 11 10 40 40 H 1.09003 * 109.46876 * 60.00265 * 13 11 10 41 41 H 1.07999 * 119.93014 * 0.02562 * 15 14 13 42 42 H 1.08000 * 119.96378 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.03238 * 180.02562 * 17 16 15 44 44 H 0.96998 * 120.00320 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.03407 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1459 -0.9291 -1.0594 5 1 1.4939 -1.7527 -1.3500 6 8 2.6953 -0.2340 -2.1806 7 6 3.1923 -1.3136 0.0000 8 6 2.1460 -0.9290 1.0594 9 1 2.5637 -0.3989 1.9152 10 7 1.2703 -2.0373 1.4486 11 6 1.4160 -2.6193 2.6554 12 8 2.2686 -2.2225 3.4212 13 6 0.5193 -3.7632 3.0535 14 6 0.8854 -4.2300 4.4387 15 6 0.2703 -3.6673 5.5425 16 6 0.6039 -4.0925 6.8153 17 6 1.5526 -5.0815 6.9881 18 6 2.1718 -5.6483 5.8821 19 8 3.1049 -6.6201 6.0488 20 6 3.4684 -6.9091 7.3146 21 1 2.9634 -6.4348 8.1431 22 6 4.4904 -7.8154 7.5526 23 7 4.8447 -8.0978 8.7877 24 14 5.3642 -8.6354 6.1196 25 1 6.5283 -7.8086 5.7111 26 1 5.8342 -9.9824 6.5316 27 1 4.4251 -8.7669 4.9769 28 6 1.8305 -5.2230 4.6046 29 1 -0.3634 0.3303 0.9732 30 1 -0.3634 0.6776 -0.7726 31 1 -0.3634 -1.0079 -0.2004 32 1 3.1953 1.3517 -0.2005 33 1 1.6428 2.0077 -0.7726 34 1 1.9627 1.8725 0.9731 35 1 3.0839 -0.8130 -2.8505 36 1 4.0710 -0.6688 0.0000 37 1 3.4443 -2.3741 0.0000 38 1 0.5883 -2.3546 0.8362 39 1 -0.5188 -3.4311 3.0449 40 1 0.6438 -4.5849 2.3481 41 1 -0.4721 -2.8942 5.4100 42 1 0.1216 -3.6515 7.6751 43 1 1.8124 -5.4134 7.9825 44 1 5.5600 -8.7315 8.9542 45 1 2.3069 -5.6653 3.7422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190490027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:54 Heat of formation + Delta-G solvation = -94.540920 kcal Electronic energy + Delta-G solvation = -26312.435628 eV Core-core repulsion = 22488.271733 eV Total energy + Delta-G solvation = -3824.163895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80190 -40.94415 -39.92130 -38.25028 -36.42743 -34.49375 -34.31413 -33.36887 -31.41894 -31.04759 -28.70774 -28.22263 -27.19524 -25.26884 -23.70051 -23.32283 -22.60497 -21.40751 -19.81635 -19.55946 -18.79247 -18.49418 -17.77616 -16.95684 -16.87953 -16.65718 -16.23557 -15.94818 -15.75392 -15.59245 -15.34971 -15.04074 -14.78057 -14.47251 -14.39520 -14.17910 -14.03282 -13.90490 -13.34451 -13.06482 -13.02853 -12.97819 -12.87697 -12.70096 -12.52854 -12.44297 -12.34029 -12.05227 -11.92773 -11.83740 -11.32275 -11.12614 -10.98267 -10.88771 -10.61722 -10.01623 -9.66742 -9.06454 -8.51070 -6.23892 0.48404 0.70209 1.28505 1.33848 1.49679 1.67374 2.13711 2.26842 2.77885 3.02606 3.16638 3.23295 3.34265 3.64664 3.76233 3.79206 3.96107 4.07289 4.09399 4.25044 4.30569 4.44243 4.48104 4.55097 4.61249 4.65722 4.70086 4.71065 4.83038 4.87697 4.92615 4.97330 5.01401 5.07860 5.12761 5.25150 5.38535 5.39493 5.40397 5.59660 5.64937 5.72661 5.76330 5.91258 6.25002 6.58630 6.83237 6.92946 7.32806 7.58192 8.60898 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002683 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.028184 B =10432.487808 C =11428.303095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.118 4.118 4 C 0.097 3.903 5 H 0.104 0.896 6 O -0.569 6.569 7 C -0.184 4.184 8 C 0.122 3.878 9 H 0.078 0.922 10 N -0.697 5.697 11 C 0.516 3.484 12 O -0.578 6.578 13 C -0.089 4.089 14 C -0.028 4.028 15 C -0.171 4.171 16 C -0.079 4.079 17 C -0.242 4.242 18 C 0.118 3.882 19 O -0.247 6.247 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.971 3.029 25 H -0.269 1.269 26 H -0.264 1.264 27 H -0.261 1.261 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.285 0.715 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 15.346 -24.956 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.176 4.176 4 C 0.038 3.962 5 H 0.121 0.879 6 O -0.377 6.377 7 C -0.223 4.223 8 C 0.016 3.984 9 H 0.096 0.904 10 N -0.351 5.351 11 C 0.304 3.696 12 O -0.456 6.456 13 C -0.128 4.128 14 C -0.029 4.029 15 C -0.189 4.189 16 C -0.097 4.097 17 C -0.261 4.261 18 C 0.069 3.931 19 O -0.155 6.155 20 C -0.476 4.476 21 H 0.097 0.903 22 C -0.189 4.189 23 N -0.566 5.566 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.188 1.188 27 H -0.185 1.185 28 C -0.200 4.200 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.257 0.743 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.837 15.884 -24.101 31.198 hybrid contribution 0.933 -1.130 0.131 1.471 sum -10.904 14.754 -23.971 30.186 Atomic orbital electron populations 1.21723 0.92010 1.03100 1.02513 1.22349 0.97008 0.95436 0.92879 1.21384 1.00809 0.93669 1.01689 1.23530 0.93979 0.94236 0.84489 0.87889 1.86476 1.79244 1.38494 1.33499 1.24109 0.98729 1.02153 0.97349 1.21728 0.91964 0.88414 0.96292 0.90405 1.45498 1.37590 1.34786 1.17181 1.21006 0.83876 0.83620 0.81079 1.90773 1.37013 1.64891 1.52949 1.20716 1.01537 0.97098 0.93491 1.19236 0.94294 0.93592 0.95769 1.21023 1.03798 1.02743 0.91324 1.21115 0.95215 0.94668 0.98679 1.21325 1.03126 1.03366 0.98290 1.19604 0.89676 0.88626 0.95163 1.83502 1.52926 1.49509 1.29543 1.20712 1.19238 1.26566 0.81094 0.90336 1.25294 0.96562 0.97078 1.00016 1.69732 1.30756 1.35597 1.20486 0.85212 0.78682 0.78046 0.78716 1.19446 1.18816 1.18522 1.20285 1.03300 1.02679 0.93735 0.92198 0.91519 0.90675 0.92770 0.91351 0.92580 0.75661 0.89368 0.91215 0.74349 0.83640 0.85263 0.83343 0.84268 0.87608 0.90563 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.59 71.98 0.62 -0.60 16 2 C -0.08 -0.97 1.34 -51.66 -0.07 -1.04 16 3 C -0.12 -1.71 8.46 71.98 0.61 -1.10 16 4 C 0.10 1.07 4.50 31.12 0.14 1.21 16 5 H 0.10 0.68 7.96 -2.39 -0.02 0.66 16 6 O -0.57 -6.70 12.76 -148.98 -1.90 -8.60 16 7 C -0.18 -2.93 7.36 31.12 0.23 -2.71 16 8 C 0.12 2.15 3.78 45.52 0.17 2.32 16 9 H 0.08 1.89 7.43 -2.39 -0.02 1.87 16 10 N -0.70 -10.57 4.77 -440.02 -2.10 -12.67 16 11 C 0.52 12.20 7.82 87.66 0.69 12.88 16 12 O -0.58 -20.97 15.64 -3.02 -0.05 -21.02 16 13 C -0.09 -1.70 5.83 29.10 0.17 -1.53 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 15 C -0.17 -5.33 9.70 22.30 0.22 -5.12 16 16 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 17 C -0.24 -11.36 9.17 22.39 0.21 -11.16 16 18 C 0.12 5.88 6.65 22.58 0.15 6.03 16 19 O -0.25 -14.12 8.59 -22.83 -0.20 -14.32 16 20 C -0.40 -24.64 9.95 67.92 0.68 -23.97 16 21 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 22 C 0.01 0.51 5.49 84.83 0.47 0.98 16 23 N -0.92 -56.97 13.96 21.61 0.30 -56.67 16 24 Si 0.97 47.01 28.62 68.60 1.96 48.98 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 28 C -0.18 -7.33 9.64 22.39 0.22 -7.11 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.36 6.63 -2.39 -0.02 0.35 16 32 H 0.05 0.88 7.18 -2.39 -0.02 0.86 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.39 1.59 9.12 -74.06 -0.68 0.91 16 36 H 0.09 1.56 7.65 -2.39 -0.02 1.54 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.42 3.04 7.17 -92.71 -0.66 2.38 16 39 H 0.15 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.13 1.80 8.08 -2.39 -0.02 1.78 16 41 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.11 5.43 5.64 -2.91 -0.02 5.42 16 44 H 0.28 16.04 8.31 -92.71 -0.77 15.26 16 45 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -82.25 371.91 2.32 -79.93 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.32 Total: 18.95 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.62 Total: -34.57 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.80 Total: -69.34 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.14 Total: -43.94 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.96 Total: 48.98 kcal Total: -82.25 2.32 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190490027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.614 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds