Wall clock time and date at job start Tue Mar 31 2020 12:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.90702 * 2 1 4 4 C 1.54049 * 113.61330 * 228.63205 * 2 1 3 5 5 H 1.09005 * 113.61001 * 156.37910 * 4 2 1 6 6 O 1.42899 * 113.69811 * 25.48654 * 4 2 1 7 7 C 1.53773 * 87.07688 * 270.92378 * 4 2 1 8 8 C 1.53779 * 113.61289 * 131.24811 * 2 1 3 9 9 H 1.09008 * 113.61187 * 203.66149 * 8 2 1 10 10 N 1.46496 * 113.61685 * 334.48313 * 8 2 1 11 11 C 1.34774 * 120.00140 * 203.46920 * 10 8 2 12 12 O 1.21284 * 119.99990 * 0.02562 * 11 10 8 13 13 C 1.50702 * 119.99871 * 180.02562 * 11 10 8 14 14 C 1.50700 * 109.46926 * 180.02562 * 13 11 10 15 15 C 1.38326 * 119.96243 * 269.72158 * 14 13 11 16 16 C 1.38287 * 120.13687 * 179.76390 * 15 14 13 17 17 C 1.38121 * 120.06318 * 0.51646 * 16 15 14 18 18 C 1.38852 * 119.93658 * 359.74053 * 17 16 15 19 19 O 1.35751 * 120.07063 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00262 * 354.44559 * 19 18 17 21 21 H 1.08002 * 119.99918 * 5.05495 * 20 19 18 22 22 C 1.38651 * 120.00402 * 185.05296 * 20 19 18 23 23 N 1.31557 * 119.99744 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00289 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47074 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47189 * 119.99969 * 24 22 20 27 27 H 1.48501 * 109.47021 * 240.00196 * 24 22 20 28 28 C 1.38076 * 119.97018 * 90.00077 * 14 13 11 29 29 H 1.08992 * 109.47501 * 288.75229 * 1 2 3 30 30 H 1.09006 * 109.46980 * 48.75248 * 1 2 3 31 31 H 1.09000 * 109.46818 * 168.74500 * 1 2 3 32 32 H 1.08996 * 109.47053 * 191.25479 * 3 2 1 33 33 H 1.09004 * 109.47051 * 311.24683 * 3 2 1 34 34 H 1.08997 * 109.47214 * 71.24904 * 3 2 1 35 35 H 0.96700 * 114.00177 * 182.96779 * 6 4 2 36 36 H 1.09000 * 113.61625 * 220.02175 * 7 4 2 37 37 H 1.09005 * 113.69044 * 89.13251 * 7 4 2 38 38 H 0.97000 * 119.99408 * 23.47429 * 10 8 2 39 39 H 1.09004 * 109.47343 * 300.00264 * 13 11 10 40 40 H 1.09005 * 109.47069 * 60.00215 * 13 11 10 41 41 H 1.08000 * 119.93326 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.96564 * 180.23488 * 16 15 14 43 43 H 1.08008 * 120.02691 * 179.71670 * 17 16 15 44 44 H 0.97000 * 120.00134 * 179.97438 * 23 22 20 45 45 H 1.08004 * 120.02866 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1471 -0.9329 -1.0593 5 1 3.1604 -0.6546 -1.3489 6 8 1.2949 -1.1708 -2.1814 7 6 2.0930 -2.0443 0.0020 8 6 2.1460 -0.9290 1.0594 9 1 3.1591 -0.6498 1.3490 10 7 1.2711 -1.1687 2.2098 11 6 1.7998 -1.5400 3.3926 12 8 2.9998 -1.6752 3.5048 13 6 0.8997 -1.7872 4.5758 14 6 1.7332 -2.1864 5.7662 15 6 2.0107 -3.5214 5.9987 16 6 2.7792 -3.8914 7.0872 17 6 3.2632 -2.9290 7.9517 18 6 2.9819 -1.5885 7.7240 19 8 3.4566 -0.6404 8.5716 20 6 4.0962 -1.0724 9.6771 21 1 4.2835 -2.1271 9.8151 22 6 4.5137 -0.1628 10.6366 23 7 4.2852 1.1218 10.4687 24 14 5.3993 -0.7615 12.1685 25 1 5.5310 -2.2398 12.1182 26 1 6.7496 -0.1466 12.2318 27 1 4.6219 -0.3740 13.3729 28 6 2.2142 -1.2197 6.6268 29 1 -0.3634 0.3303 0.9730 30 1 -0.3633 0.6776 -0.7727 31 1 -0.3633 -1.0079 -0.2006 32 1 3.1953 1.3517 -0.2006 33 1 1.6428 2.0078 -0.7727 34 1 1.9627 1.8726 0.9731 35 1 1.6591 -1.7914 -2.8274 36 1 2.9714 -2.6897 0.0036 37 1 1.1571 -2.6033 0.0035 38 1 0.3114 -1.0603 2.1200 39 1 0.3471 -0.8768 4.8084 40 1 0.1985 -2.5871 4.3380 41 1 1.6300 -4.2760 5.3264 42 1 2.9974 -4.9343 7.2640 43 1 3.8595 -3.2191 8.8042 44 1 4.5769 1.7582 11.1401 45 1 1.9936 -0.1778 6.4469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190490063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:00 Heat of formation + Delta-G solvation = -99.246942 kcal Electronic energy + Delta-G solvation = -26199.812914 eV Core-core repulsion = 22375.444951 eV Total energy + Delta-G solvation = -3824.367963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.71289 -40.84319 -39.89831 -38.14983 -36.42955 -34.39241 -34.28258 -33.31930 -31.48365 -30.86807 -28.66395 -28.39516 -27.27649 -25.12301 -23.59843 -23.26583 -22.67315 -21.39993 -19.86847 -19.38153 -18.74735 -18.47926 -17.94533 -16.84117 -16.74550 -16.57780 -16.12450 -16.04298 -15.89244 -15.50454 -15.37627 -15.07705 -14.81063 -14.34986 -14.23662 -14.06143 -13.82437 -13.60116 -13.51474 -13.21539 -13.03257 -12.97051 -12.84303 -12.58299 -12.48323 -12.37423 -12.22200 -12.08675 -12.03229 -11.72306 -11.37092 -11.20312 -10.93210 -10.80378 -10.65250 -9.96679 -9.63123 -8.97518 -8.47326 -6.15789 0.52484 0.76124 1.33747 1.42648 1.52657 1.66504 2.17137 2.21296 2.85083 3.17439 3.24557 3.33336 3.44366 3.64061 3.78089 3.81103 3.89133 4.10088 4.13389 4.22774 4.32255 4.44523 4.47526 4.52323 4.59589 4.64217 4.65768 4.74163 4.76596 4.89923 4.94236 5.02589 5.05704 5.08753 5.11442 5.13592 5.31213 5.34745 5.44193 5.57856 5.65565 5.73180 5.75838 6.03034 6.23918 6.58748 6.91890 6.97379 7.31395 7.79270 8.76615 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.002393 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.758098 B =11699.186113 C =12312.003153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.140 4.140 4 C 0.095 3.905 5 H 0.092 0.908 6 O -0.564 6.564 7 C -0.174 4.174 8 C 0.121 3.879 9 H 0.090 0.910 10 N -0.705 5.705 11 C 0.515 3.485 12 O -0.578 6.578 13 C -0.093 4.093 14 C -0.025 4.025 15 C -0.180 4.180 16 C -0.074 4.074 17 C -0.247 4.247 18 C 0.112 3.888 19 O -0.235 6.235 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.923 5.923 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.269 1.269 27 H -0.266 1.266 28 C -0.193 4.193 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.416 0.584 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 -7.114 -23.936 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.197 4.197 4 C 0.035 3.965 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.213 4.213 8 C 0.016 3.984 9 H 0.108 0.892 10 N -0.358 5.358 11 C 0.303 3.697 12 O -0.457 6.457 13 C -0.132 4.132 14 C -0.026 4.026 15 C -0.199 4.199 16 C -0.092 4.092 17 C -0.267 4.267 18 C 0.062 3.938 19 O -0.142 6.142 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.840 3.160 25 H -0.175 1.175 26 H -0.194 1.194 27 H -0.191 1.191 28 C -0.212 4.212 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.255 0.745 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.600 -6.358 -23.460 26.134 hybrid contribution 0.840 -0.095 0.692 1.092 sum -8.760 -6.452 -22.769 25.234 Atomic orbital electron populations 1.21401 0.91290 1.03062 1.02115 1.22445 0.97845 0.94599 0.92987 1.21778 1.00810 0.94963 1.02191 1.23218 0.93760 0.94785 0.84711 0.89011 1.86453 1.47232 1.68619 1.34863 1.24087 1.03479 0.97720 0.96063 1.22290 0.95008 0.97070 0.84075 0.89177 1.45798 1.11355 1.69528 1.09140 1.20954 0.88722 0.75448 0.84577 1.90746 1.17879 1.52350 1.84690 1.20722 0.97088 1.06446 0.88932 1.19192 0.96526 0.92837 0.94022 1.20975 1.03752 0.95383 0.99761 1.21134 0.95396 0.99100 0.93538 1.21294 1.08443 0.92701 1.04222 1.19875 0.93087 0.89438 0.91422 1.83935 1.65791 1.32814 1.31648 1.21863 1.35738 0.95133 0.96180 0.88257 1.26620 0.98381 0.94939 1.02267 1.70198 1.46575 1.02639 1.36713 0.84508 0.77377 0.79037 0.75111 1.17526 1.19376 1.19056 1.20218 1.04512 0.99586 0.96893 0.91588 0.91650 0.91417 0.92246 0.91249 0.92767 0.75534 0.91225 0.88255 0.74502 0.86082 0.83816 0.83507 0.83709 0.86496 0.91854 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 7.47 71.98 0.54 -0.94 16 2 C -0.08 -1.14 1.35 -51.56 -0.07 -1.21 16 3 C -0.14 -2.13 9.20 71.98 0.66 -1.46 16 4 C 0.09 1.23 4.63 31.21 0.14 1.37 16 5 H 0.09 1.05 7.97 -2.38 -0.02 1.03 16 6 O -0.56 -6.64 12.78 -148.98 -1.90 -8.54 16 7 C -0.17 -2.62 7.36 31.12 0.23 -2.39 16 8 C 0.12 2.29 3.66 45.52 0.17 2.46 16 9 H 0.09 2.24 7.46 -2.38 -0.02 2.22 16 10 N -0.70 -13.20 5.24 -440.04 -2.31 -15.51 16 11 C 0.52 13.99 7.82 87.66 0.69 14.67 16 12 O -0.58 -22.40 15.65 -3.04 -0.05 -22.45 16 13 C -0.09 -2.17 5.83 29.10 0.17 -2.01 16 14 C -0.03 -0.89 4.37 -19.88 -0.09 -0.98 16 15 C -0.18 -6.00 9.70 22.30 0.22 -5.79 16 16 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 17 C -0.25 -11.59 9.17 22.39 0.21 -11.38 16 18 C 0.11 5.97 6.65 22.57 0.15 6.12 16 19 O -0.23 -14.92 9.76 -22.73 -0.22 -15.14 16 20 C -0.41 -25.17 9.49 67.92 0.64 -24.52 16 21 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 22 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 23 N -0.92 -58.45 13.67 21.61 0.30 -58.15 16 24 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 25 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 C -0.19 -8.83 9.64 22.39 0.22 -8.62 16 29 H 0.07 0.69 7.07 -2.39 -0.02 0.67 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.79 7.19 -2.39 -0.02 0.77 16 32 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.39 1.53 9.12 -74.06 -0.68 0.85 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.37 7.66 -2.38 -0.02 1.35 16 38 H 0.42 5.06 6.62 -92.71 -0.61 4.44 16 39 H 0.12 2.38 8.08 -2.38 -0.02 2.36 16 40 H 0.14 2.11 8.08 -2.38 -0.02 2.09 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -84.86 372.94 2.14 -82.72 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.26 Total: 28.85 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 4.56 Total: -38.19 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.01 Total: -73.66 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -2.17 Total: -46.13 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -84.86 2.14 -82.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190490063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.524 kcal (2) G-P(sol) polarization free energy of solvation -84.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds