Wall clock time and date at job start Tue Mar 31 2020 12:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 112.85108 * 2 1 4 4 C 1.53781 * 113.61400 * 228.69360 * 2 1 3 5 5 H 1.08994 * 113.61451 * 334.56869 * 4 2 1 6 6 O 1.42899 * 113.61305 * 105.38904 * 4 2 1 7 7 C 1.53787 * 87.08224 * 220.02059 * 4 2 1 8 8 C 1.53776 * 87.07909 * 25.43338 * 7 4 2 9 9 H 1.09003 * 113.69273 * 220.01000 * 8 7 4 10 10 N 1.46498 * 113.61707 * 89.11519 * 8 7 4 11 11 C 1.34778 * 119.99967 * 107.49981 * 10 8 7 12 12 O 1.21284 * 120.00037 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99918 * 180.02562 * 11 10 8 14 14 C 1.50708 * 109.47090 * 180.02562 * 13 11 10 15 15 C 1.38300 * 119.93031 * 89.99690 * 14 13 11 16 16 C 1.38103 * 120.06639 * 180.02562 * 15 14 13 17 17 C 1.38875 * 119.93000 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06756 * 180.02562 * 17 16 15 19 19 C 1.34830 * 117.00114 * 5.53168 * 18 17 16 20 20 H 1.07999 * 120.00012 * 354.94279 * 19 18 17 21 21 C 1.38649 * 120.00144 * 175.21759 * 19 18 17 22 22 N 1.31558 * 119.99809 * 359.72816 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.72492 * 21 19 18 24 24 H 1.48503 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47149 * 119.99996 * 23 21 19 26 26 H 1.48503 * 109.47126 * 240.00116 * 23 21 19 27 27 C 1.38884 * 119.86261 * 0.27199 * 17 16 15 28 28 C 1.38092 * 119.92795 * 359.45333 * 27 17 16 29 29 H 1.09000 * 109.47020 * 288.80377 * 1 2 3 30 30 H 1.08997 * 109.46723 * 48.80545 * 1 2 3 31 31 H 1.08997 * 109.47048 * 168.80060 * 1 2 3 32 32 H 1.09001 * 109.47249 * 191.19272 * 3 2 1 33 33 H 1.08993 * 109.47231 * 311.19448 * 3 2 1 34 34 H 1.09000 * 109.47224 * 71.19966 * 3 2 1 35 35 H 0.96703 * 114.00127 * 180.02562 * 6 4 2 36 36 H 1.08997 * 113.61053 * 270.88194 * 7 4 2 37 37 H 1.08996 * 113.61282 * 139.97951 * 7 4 2 38 38 H 0.97003 * 120.00553 * 287.50453 * 10 8 7 39 39 H 1.08992 * 109.47449 * 60.00096 * 13 11 10 40 40 H 1.08997 * 109.47121 * 299.99446 * 13 11 10 41 41 H 1.08003 * 119.96829 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.03098 * 179.97438 * 16 15 14 43 43 H 0.97009 * 119.99805 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03250 * 179.72259 * 27 17 16 45 45 H 1.08010 * 119.96710 * 180.27685 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0585 5 1 1.4945 -1.7548 -1.3473 6 8 2.6937 -0.2361 -2.1812 7 6 3.1924 -1.3137 0.0013 8 6 2.1460 -0.9281 1.0602 9 1 2.5637 -0.3971 1.9156 10 7 1.2703 -2.0358 1.4505 11 6 1.4123 -2.6131 2.6600 12 8 2.2648 -2.2153 3.4256 13 6 0.5118 -3.7530 3.0613 14 6 0.8743 -4.2149 4.4493 15 6 0.2584 -3.6453 5.5489 16 6 0.5888 -4.0661 6.8221 17 6 1.5401 -5.0625 6.9976 18 8 1.8666 -5.4786 8.2478 19 6 1.1506 -4.9674 9.2696 20 1 0.4141 -4.2000 9.0821 21 6 1.3639 -5.4227 10.5617 22 7 2.2611 -6.3574 10.7900 23 14 0.3773 -4.7089 11.9783 24 1 -0.5601 -3.6804 11.4600 25 1 -0.3935 -5.7921 12.6399 26 1 1.3010 -4.0873 12.9610 27 6 2.1604 -5.6289 5.8915 28 6 1.8216 -5.2078 4.6208 29 1 -0.3633 0.3312 0.9728 30 1 -0.3633 0.6768 -0.7733 31 1 -0.3633 -1.0081 -0.1996 32 1 3.1942 1.3532 -0.1995 33 1 1.6416 2.0075 -0.7732 34 1 1.9600 1.8733 0.9728 35 1 3.0823 -0.8158 -2.8506 36 1 4.0711 -0.6688 0.0006 37 1 3.4443 -2.3741 0.0023 38 1 0.5883 -2.3538 0.8384 39 1 0.6353 -4.5779 2.3597 40 1 -0.5253 -3.4181 3.0496 41 1 -0.4810 -2.8701 5.4118 42 1 0.1078 -3.6206 7.6804 43 1 2.4105 -6.6757 11.6941 44 1 2.9038 -6.4008 6.0250 45 1 2.3004 -5.6510 3.7600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190501032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:07 Heat of formation + Delta-G solvation = -71.394120 kcal Electronic energy + Delta-G solvation = -26072.488504 eV Core-core repulsion = 22249.328329 eV Total energy + Delta-G solvation = -3823.160174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01150 -39.33820 -38.54171 -36.47522 -35.77076 -33.35055 -32.41725 -31.36597 -30.61828 -30.10719 -27.77759 -26.78813 -25.23455 -24.30685 -22.96261 -21.93275 -21.14684 -20.09788 -18.91045 -17.93958 -17.86070 -16.94860 -16.79992 -16.15807 -15.51415 -15.14602 -14.92254 -14.54064 -14.34859 -14.21425 -13.96590 -13.78585 -13.51139 -13.39217 -13.28992 -12.74678 -12.66668 -12.53471 -12.45299 -12.25966 -12.18928 -11.81451 -11.51135 -11.46155 -11.24905 -11.15698 -10.82209 -10.72408 -10.57234 -10.51997 -10.39182 -10.03517 -9.71840 -9.28519 -9.12407 -8.79140 -8.10794 -7.12351 -6.41393 -3.99782 2.28418 2.29898 2.74149 3.08087 3.16032 3.17108 3.21819 3.75297 3.98378 3.99897 4.23578 4.46064 4.48678 4.57549 4.80777 4.96730 5.01550 5.14536 5.24876 5.28146 5.29074 5.33326 5.36000 5.43150 5.49562 5.59806 5.61946 5.64694 5.67632 5.76719 5.79343 5.88802 5.93706 6.04196 6.25851 6.41800 6.46000 6.74442 6.95650 7.09653 7.25631 7.27982 7.41039 7.43717 7.49507 7.88262 8.04166 8.31923 9.04496 9.75503 10.76860 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.002202 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.510593 B =12710.856399 C =13039.781598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.117 4.117 4 C 0.084 3.916 5 H 0.079 0.921 6 O -0.556 6.556 7 C -0.181 4.181 8 C 0.131 3.869 9 H 0.108 0.892 10 N -0.724 5.724 11 C 0.511 3.489 12 O -0.516 6.516 13 C -0.079 4.079 14 C -0.171 4.171 15 C -0.056 4.056 16 C -0.232 4.232 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.192 4.192 28 C -0.059 4.059 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.376 0.624 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.116 0.884 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 9.951 -24.987 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.175 4.175 4 C 0.025 3.975 5 H 0.097 0.903 6 O -0.361 6.361 7 C -0.220 4.220 8 C 0.025 3.975 9 H 0.126 0.874 10 N -0.377 5.377 11 C 0.298 3.702 12 O -0.390 6.390 13 C -0.119 4.119 14 C -0.172 4.172 15 C -0.075 4.075 16 C -0.252 4.252 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.211 4.211 28 C -0.078 4.078 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.600 10.463 -23.747 26.199 hybrid contribution -0.606 -0.302 0.047 0.678 sum -4.206 10.161 -23.700 26.127 Atomic orbital electron populations 1.21708 0.93525 1.01682 1.02535 1.22401 0.95904 0.96130 0.93749 1.21385 1.01268 0.93118 1.01693 1.23583 0.94853 0.94188 0.84869 0.90321 1.86521 1.79106 1.37414 1.33023 1.24108 0.98630 1.02579 0.96718 1.21714 0.91052 0.88026 0.96736 0.87391 1.45830 1.37821 1.35924 1.18111 1.21109 0.84814 0.83809 0.80459 1.90750 1.34535 1.62736 1.50943 1.20405 0.98949 0.95962 0.96602 1.18621 1.03778 1.02494 0.92291 1.20504 0.97851 0.97130 0.91966 1.21105 1.04024 1.02670 0.97359 1.19388 0.91989 0.91802 0.86511 1.83977 1.53075 1.60723 1.10432 1.21376 1.19410 1.21235 0.84605 0.89037 1.25289 0.97247 0.96282 0.97794 1.70056 1.31397 1.26697 1.21705 0.85645 0.78987 0.78688 0.80088 1.19118 1.20174 1.20166 1.20151 1.05403 1.05005 0.90528 1.20387 0.95746 0.95997 0.95644 0.91722 0.92061 0.92667 0.91786 0.91884 0.92317 0.77691 0.88485 0.90779 0.76830 0.88999 0.88981 0.87845 0.85591 0.92125 0.86563 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.58 37.16 0.32 -0.59 16 2 C -0.08 -0.62 1.33 -153.70 -0.21 -0.83 16 3 C -0.12 -0.93 8.46 37.16 0.31 -0.62 16 4 C 0.08 0.58 4.50 -25.92 -0.12 0.47 16 5 H 0.08 0.44 7.96 -51.93 -0.41 0.02 16 6 O -0.56 -3.93 12.77 -35.23 -0.45 -4.38 16 7 C -0.18 -1.51 7.36 -25.92 -0.19 -1.70 16 8 C 0.13 1.26 3.78 -67.12 -0.25 1.00 16 9 H 0.11 1.31 7.42 -51.93 -0.39 0.93 16 10 N -0.72 -6.79 4.77 -53.02 -0.25 -7.05 16 11 C 0.51 6.87 7.82 -10.98 -0.09 6.79 16 12 O -0.52 -9.65 15.63 5.55 0.09 -9.56 16 13 C -0.08 -0.97 5.83 -29.03 -0.17 -1.14 16 14 C -0.17 -2.98 4.38 -104.57 -0.46 -3.44 16 15 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 16 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 17 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 18 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 19 C -0.39 -11.16 9.49 30.88 0.29 -10.87 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.76 13.67 55.48 0.76 -25.01 16 23 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.19 -4.24 9.99 -39.40 -0.39 -4.63 16 28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.29 6.63 -51.93 -0.34 -0.05 16 32 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.38 1.20 9.12 45.56 0.42 1.61 16 36 H 0.10 0.83 7.66 -51.93 -0.40 0.43 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 2.53 7.17 -40.82 -0.29 2.24 16 39 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -35.39 373.06 -7.41 -42.79 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.72 Total: 6.42 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.43 Total: -19.49 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.51 Total: -32.05 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.36 Total: -19.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.39 -7.41 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.599 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds