Wall clock time and date at job start Tue Mar 31 2020 12:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 112.85108 * 2 1 4 4 C 1.53781 * 113.61400 * 228.69360 * 2 1 3 5 5 H 1.08994 * 113.61451 * 334.56869 * 4 2 1 6 6 O 1.42899 * 113.61305 * 105.38904 * 4 2 1 7 7 C 1.53787 * 87.08224 * 220.02059 * 4 2 1 8 8 C 1.53776 * 87.07909 * 25.43338 * 7 4 2 9 9 H 1.09003 * 113.69273 * 220.01000 * 8 7 4 10 10 N 1.46498 * 113.61707 * 89.11519 * 8 7 4 11 11 C 1.34778 * 119.99967 * 107.49981 * 10 8 7 12 12 O 1.21284 * 120.00037 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99918 * 180.02562 * 11 10 8 14 14 C 1.50708 * 109.47090 * 180.02562 * 13 11 10 15 15 C 1.38300 * 119.93031 * 89.99690 * 14 13 11 16 16 C 1.38103 * 120.06639 * 180.02562 * 15 14 13 17 17 C 1.38875 * 119.93000 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06756 * 180.02562 * 17 16 15 19 19 C 1.34830 * 117.00114 * 5.53168 * 18 17 16 20 20 H 1.07999 * 120.00012 * 354.94279 * 19 18 17 21 21 C 1.38649 * 120.00144 * 175.21759 * 19 18 17 22 22 N 1.31558 * 119.99809 * 359.72816 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.72492 * 21 19 18 24 24 H 1.48503 * 109.46943 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47149 * 119.99996 * 23 21 19 26 26 H 1.48503 * 109.47126 * 240.00116 * 23 21 19 27 27 C 1.38884 * 119.86261 * 0.27199 * 17 16 15 28 28 C 1.38092 * 119.92795 * 359.45333 * 27 17 16 29 29 H 1.09000 * 109.47020 * 288.80377 * 1 2 3 30 30 H 1.08997 * 109.46723 * 48.80545 * 1 2 3 31 31 H 1.08997 * 109.47048 * 168.80060 * 1 2 3 32 32 H 1.09001 * 109.47249 * 191.19272 * 3 2 1 33 33 H 1.08993 * 109.47231 * 311.19448 * 3 2 1 34 34 H 1.09000 * 109.47224 * 71.19966 * 3 2 1 35 35 H 0.96703 * 114.00127 * 180.02562 * 6 4 2 36 36 H 1.08997 * 113.61053 * 270.88194 * 7 4 2 37 37 H 1.08996 * 113.61282 * 139.97951 * 7 4 2 38 38 H 0.97003 * 120.00553 * 287.50453 * 10 8 7 39 39 H 1.08992 * 109.47449 * 60.00096 * 13 11 10 40 40 H 1.08997 * 109.47121 * 299.99446 * 13 11 10 41 41 H 1.08003 * 119.96829 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.03098 * 179.97438 * 16 15 14 43 43 H 0.97009 * 119.99805 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03250 * 179.72259 * 27 17 16 45 45 H 1.08010 * 119.96710 * 180.27685 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9301 -1.0585 5 1 1.4945 -1.7548 -1.3473 6 8 2.6937 -0.2361 -2.1812 7 6 3.1924 -1.3137 0.0013 8 6 2.1460 -0.9281 1.0602 9 1 2.5637 -0.3971 1.9156 10 7 1.2703 -2.0358 1.4505 11 6 1.4123 -2.6131 2.6600 12 8 2.2648 -2.2153 3.4256 13 6 0.5118 -3.7530 3.0613 14 6 0.8743 -4.2149 4.4493 15 6 0.2584 -3.6453 5.5489 16 6 0.5888 -4.0661 6.8221 17 6 1.5401 -5.0625 6.9976 18 8 1.8666 -5.4786 8.2478 19 6 1.1506 -4.9674 9.2696 20 1 0.4141 -4.2000 9.0821 21 6 1.3639 -5.4227 10.5617 22 7 2.2611 -6.3574 10.7900 23 14 0.3773 -4.7089 11.9783 24 1 -0.5601 -3.6804 11.4600 25 1 -0.3935 -5.7921 12.6399 26 1 1.3010 -4.0873 12.9610 27 6 2.1604 -5.6289 5.8915 28 6 1.8216 -5.2078 4.6208 29 1 -0.3633 0.3312 0.9728 30 1 -0.3633 0.6768 -0.7733 31 1 -0.3633 -1.0081 -0.1996 32 1 3.1942 1.3532 -0.1995 33 1 1.6416 2.0075 -0.7732 34 1 1.9600 1.8733 0.9728 35 1 3.0823 -0.8158 -2.8506 36 1 4.0711 -0.6688 0.0006 37 1 3.4443 -2.3741 0.0023 38 1 0.5883 -2.3538 0.8384 39 1 0.6353 -4.5779 2.3597 40 1 -0.5253 -3.4181 3.0496 41 1 -0.4810 -2.8701 5.4118 42 1 0.1078 -3.6206 7.6804 43 1 2.4105 -6.6757 11.6941 44 1 2.9038 -6.4008 6.0250 45 1 2.3004 -5.6510 3.7600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190501032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:07 Heat of formation + Delta-G solvation = -97.787895 kcal Electronic energy + Delta-G solvation = -26073.633024 eV Core-core repulsion = 22249.328329 eV Total energy + Delta-G solvation = -3824.304694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.76985 -40.82897 -39.86121 -38.14768 -36.41046 -34.41790 -34.22947 -32.73156 -31.77067 -31.33516 -28.50101 -28.15393 -27.07596 -25.14153 -23.63429 -23.63028 -22.52234 -21.29357 -19.85686 -19.62257 -18.82395 -18.47039 -17.72485 -17.02514 -16.60083 -16.32382 -16.15598 -15.95088 -15.69764 -15.53528 -15.35237 -14.99304 -14.72903 -14.50735 -14.36611 -14.16585 -14.01009 -13.60066 -13.34750 -13.03854 -12.98849 -12.95084 -12.86048 -12.67163 -12.48241 -12.27873 -12.25493 -12.09835 -12.03918 -11.82453 -11.17432 -11.11797 -10.92790 -10.74578 -10.60392 -9.98547 -9.75562 -8.89438 -8.47597 -6.15668 0.62277 0.67787 1.33762 1.42399 1.52631 1.72533 2.17350 2.18685 2.84929 3.18122 3.24685 3.35480 3.52239 3.65363 3.80455 3.86629 3.97167 4.06699 4.14667 4.21131 4.26475 4.48754 4.50869 4.59768 4.62899 4.70837 4.73133 4.81443 4.82598 4.89531 4.93264 5.00866 5.07692 5.09601 5.13207 5.15446 5.31336 5.38950 5.40500 5.57247 5.62319 5.72335 5.78707 6.03110 6.24119 6.63387 6.94725 6.97048 7.37955 7.78726 8.76139 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.002202 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.510593 B =12710.856399 C =13039.781598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.118 4.118 4 C 0.098 3.902 5 H 0.104 0.896 6 O -0.570 6.570 7 C -0.180 4.180 8 C 0.122 3.878 9 H 0.075 0.925 10 N -0.699 5.699 11 C 0.513 3.487 12 O -0.580 6.580 13 C -0.077 4.077 14 C -0.145 4.145 15 C -0.060 4.060 16 C -0.245 4.245 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.207 4.207 28 C -0.057 4.057 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.417 0.583 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.111 0.889 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 10.922 -28.701 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 C -0.175 4.175 4 C 0.039 3.961 5 H 0.122 0.878 6 O -0.378 6.378 7 C -0.220 4.220 8 C 0.015 3.985 9 H 0.093 0.907 10 N -0.352 5.352 11 C 0.301 3.699 12 O -0.458 6.458 13 C -0.116 4.116 14 C -0.146 4.146 15 C -0.078 4.078 16 C -0.264 4.264 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.227 4.227 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.256 0.744 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.130 11.446 -27.589 30.492 hybrid contribution 0.192 -0.499 0.769 0.936 sum -5.939 10.947 -26.821 29.571 Atomic orbital electron populations 1.21724 0.92238 1.03092 1.02328 1.22369 0.96878 0.95510 0.93211 1.21379 1.00876 0.93736 1.01551 1.23514 0.94050 0.94148 0.84431 0.87822 1.86483 1.79312 1.38532 1.33439 1.24079 0.98554 1.02332 0.96998 1.21715 0.92077 0.88489 0.96197 0.90680 1.45538 1.37619 1.34912 1.17141 1.21237 0.84007 0.83769 0.80849 1.90761 1.37291 1.64763 1.52980 1.20541 1.00560 0.96908 0.93607 1.19269 1.00716 0.99761 0.94899 1.20941 0.98457 0.97559 0.90870 1.21227 1.03785 1.02404 0.98978 1.19951 0.94145 0.93694 0.86096 1.83937 1.55200 1.63017 1.11972 1.21856 1.19923 1.21798 0.85329 0.88271 1.26625 0.98435 0.96607 1.00574 1.70200 1.34070 1.29157 1.22594 0.84507 0.77466 0.78296 0.75758 1.17543 1.19040 1.19392 1.20446 1.05466 1.05250 0.91498 1.20880 0.95548 0.95919 0.95184 0.92521 0.91567 0.90620 0.92628 0.91426 0.92815 0.75629 0.89385 0.90796 0.74435 0.84878 0.85159 0.84389 0.86593 0.91843 0.87067 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.58 71.98 0.62 -0.69 16 2 C -0.08 -1.01 1.33 -51.66 -0.07 -1.08 16 3 C -0.12 -1.74 8.46 71.98 0.61 -1.13 16 4 C 0.10 1.01 4.50 31.12 0.14 1.15 16 5 H 0.10 0.60 7.96 -2.39 -0.02 0.58 16 6 O -0.57 -6.31 12.77 -148.98 -1.90 -8.21 16 7 C -0.18 -2.64 7.36 31.12 0.23 -2.41 16 8 C 0.12 2.10 3.78 45.52 0.17 2.27 16 9 H 0.07 1.83 7.42 -2.39 -0.02 1.82 16 10 N -0.70 -10.38 4.77 -440.04 -2.10 -12.48 16 11 C 0.51 11.93 7.82 87.66 0.69 12.62 16 12 O -0.58 -20.83 15.63 -3.04 -0.05 -20.88 16 13 C -0.08 -1.44 5.83 29.10 0.17 -1.27 16 14 C -0.15 -4.59 4.38 -19.83 -0.09 -4.68 16 15 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 16 C -0.24 -11.36 9.17 22.39 0.21 -11.15 16 17 C 0.11 5.88 6.65 22.58 0.15 6.03 16 18 O -0.23 -14.80 9.76 -22.77 -0.22 -15.02 16 19 C -0.41 -25.06 9.49 67.92 0.64 -24.42 16 20 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 21 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.22 13.67 21.61 0.30 -57.93 16 23 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 28 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.40 6.63 -2.39 -0.02 0.39 16 32 H 0.05 0.90 7.20 -2.39 -0.02 0.88 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.39 1.21 9.12 -74.06 -0.68 0.53 16 36 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 2.95 7.17 -92.71 -0.66 2.29 16 39 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 40 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 41 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 43 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 44 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 45 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -85.58 373.06 2.32 -83.26 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.32 Total: 23.72 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.59 Total: -38.75 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.80 Total: -70.40 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.17 Total: -44.12 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -85.58 2.32 -83.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.531 kcal (2) G-P(sol) polarization free energy of solvation -85.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds