Wall clock time and date at job start Tue Mar 31 2020 12:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 112.90660 * 2 1 4 4 C 1.53774 * 113.61491 * 228.75041 * 2 1 3 5 5 H 1.09002 * 113.61900 * 156.33536 * 4 2 1 6 6 O 1.42899 * 113.61816 * 25.42912 * 4 2 1 7 7 C 1.53788 * 87.08170 * 270.88316 * 4 2 1 8 8 C 1.53779 * 113.61200 * 131.24926 * 2 1 3 9 9 H 1.08992 * 113.69198 * 334.55601 * 8 2 1 10 10 N 1.46498 * 113.61131 * 203.66551 * 8 2 1 11 11 C 1.34784 * 120.00159 * 158.00297 * 10 8 2 12 12 O 1.21281 * 119.99427 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00320 * 179.97438 * 11 10 8 14 14 C 1.50701 * 109.47031 * 179.97438 * 13 11 10 15 15 C 1.38305 * 119.92884 * 270.27462 * 14 13 11 16 16 C 1.38104 * 120.06265 * 180.23644 * 15 14 13 17 17 C 1.38874 * 119.93268 * 359.46835 * 16 15 14 18 18 O 1.35748 * 120.06924 * 180.25860 * 17 16 15 19 19 C 1.34830 * 117.00158 * 354.46435 * 18 17 16 20 20 H 1.08005 * 119.99657 * 5.05386 * 19 18 17 21 21 C 1.38652 * 120.00222 * 185.06116 * 19 18 17 22 22 N 1.31559 * 120.00088 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00175 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47306 * 89.99870 * 23 21 19 25 25 H 1.48500 * 109.47366 * 210.00597 * 23 21 19 26 26 H 1.48501 * 109.46766 * 330.00399 * 23 21 19 27 27 C 1.38882 * 119.86301 * 0.27782 * 17 16 15 28 28 C 1.38102 * 119.92770 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47187 * 288.75126 * 1 2 3 30 30 H 1.09000 * 109.47194 * 48.74806 * 1 2 3 31 31 H 1.08995 * 109.47373 * 168.74862 * 1 2 3 32 32 H 1.09003 * 109.46601 * 191.25127 * 3 2 1 33 33 H 1.09004 * 109.46688 * 311.24943 * 3 2 1 34 34 H 1.09002 * 109.47135 * 71.24929 * 3 2 1 35 35 H 0.96700 * 114.00493 * 182.99861 * 6 4 2 36 36 H 1.08997 * 113.61720 * 220.01962 * 7 4 2 37 37 H 1.09000 * 113.61100 * 89.11079 * 7 4 2 38 38 H 0.97003 * 120.00295 * 337.99570 * 10 8 2 39 39 H 1.09002 * 109.47153 * 59.99718 * 13 11 10 40 40 H 1.09000 * 109.47066 * 299.99764 * 13 11 10 41 41 H 1.07999 * 119.96556 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.03234 * 179.74884 * 16 15 14 43 43 H 0.96996 * 120.00113 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03759 * 180.02562 * 27 17 16 45 45 H 1.08006 * 119.96319 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0593 5 1 3.1591 -0.6498 -1.3490 6 8 1.2919 -1.1645 -2.1805 7 6 2.0930 -2.0425 0.0000 8 6 2.1460 -0.9290 1.0594 9 1 1.4956 -1.1092 1.9152 10 7 3.5075 -0.5537 1.4486 11 6 4.0065 -0.9611 2.6326 12 8 3.3280 -1.6380 3.3758 13 6 5.4073 -0.5756 3.0327 14 6 5.7187 -1.1524 4.3897 15 6 5.4340 -0.4245 5.5308 16 6 5.7228 -0.9484 6.7755 17 6 6.2895 -2.2118 6.8812 18 8 6.5696 -2.7316 8.1035 19 6 6.3809 -1.9269 9.1688 20 1 5.9453 -0.9476 9.0353 21 6 6.7460 -2.3565 10.4355 22 7 6.5614 -1.5715 11.4749 23 14 7.4989 -4.0504 10.6664 24 1 8.9758 -3.9567 10.5433 25 1 7.1461 -4.5696 12.0122 26 1 6.9731 -4.9716 9.6270 27 6 6.5693 -2.9424 5.7336 28 6 6.2830 -2.4108 4.4916 29 1 -0.3633 0.3304 0.9731 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3634 -1.0078 -0.2005 32 1 3.1954 1.3517 -0.2005 33 1 1.6428 2.0078 -0.7727 34 1 1.9627 1.8727 0.9731 35 1 1.6549 -1.7840 -2.8282 36 1 2.9717 -2.6875 0.0001 37 1 1.1568 -2.6009 0.0000 38 1 4.0500 -0.0121 0.8543 39 1 5.4877 0.5107 3.0729 40 1 6.1146 -0.9655 2.3008 41 1 4.9886 0.5559 5.4481 42 1 5.5040 -0.3779 7.6661 43 1 6.8165 -1.8722 12.3611 44 1 7.0096 -3.9253 5.8125 45 1 6.5007 -2.9783 3.5987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190501050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:11 Heat of formation + Delta-G solvation = -69.390853 kcal Electronic energy + Delta-G solvation = -26100.627720 eV Core-core repulsion = 22277.554414 eV Total energy + Delta-G solvation = -3823.073306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04405 -39.43898 -38.66630 -36.64014 -35.79556 -33.38142 -32.47121 -31.54460 -30.67537 -30.20254 -27.81034 -27.00824 -25.13937 -24.26756 -22.99014 -22.07127 -21.11870 -20.10440 -18.94108 -17.86059 -17.85423 -17.24106 -16.85865 -16.20495 -15.56231 -15.22446 -14.98022 -14.65866 -14.43088 -14.07027 -13.86944 -13.83645 -13.71128 -13.47921 -13.32540 -12.75808 -12.66227 -12.54940 -12.47266 -12.28491 -12.17953 -12.16368 -11.65461 -11.49943 -11.28372 -11.16983 -10.90455 -10.72896 -10.65208 -10.54422 -10.13154 -10.06114 -9.76388 -9.35371 -9.15798 -8.83284 -8.20190 -7.27606 -6.38841 -4.05121 2.17665 2.19283 2.69961 3.05751 3.24566 3.27545 3.43158 3.72902 3.95353 4.22087 4.26425 4.42573 4.46624 4.49976 4.77958 4.87565 4.95294 4.99933 5.11720 5.21042 5.23471 5.27651 5.31185 5.41114 5.47439 5.56749 5.59729 5.61579 5.62699 5.68821 5.75624 5.79007 5.91769 6.02267 6.16591 6.36306 6.38695 6.59849 6.82826 7.05364 7.24099 7.25236 7.34011 7.40168 7.65211 7.83692 8.07148 8.27618 8.96597 9.59583 10.68881 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031324 B = 0.002212 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.659748 B =12654.157915 C =12836.094397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.138 4.138 4 C 0.084 3.916 5 H 0.079 0.921 6 O -0.556 6.556 7 C -0.182 4.182 8 C 0.131 3.869 9 H 0.107 0.893 10 N -0.723 5.723 11 C 0.511 3.489 12 O -0.517 6.517 13 C -0.081 4.081 14 C -0.162 4.162 15 C -0.057 4.057 16 C -0.219 4.219 17 C 0.162 3.838 18 O -0.218 6.218 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.192 4.192 28 C -0.061 4.061 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.376 0.624 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.397 0.603 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.133 0.867 43 H 0.279 0.721 44 H 0.116 0.884 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 4.086 -27.374 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.081 4.081 3 C -0.195 4.195 4 C 0.025 3.975 5 H 0.097 0.903 6 O -0.361 6.361 7 C -0.221 4.221 8 C 0.025 3.975 9 H 0.125 0.875 10 N -0.377 5.377 11 C 0.298 3.702 12 O -0.390 6.390 13 C -0.121 4.121 14 C -0.163 4.163 15 C -0.076 4.076 16 C -0.238 4.238 17 C 0.110 3.890 18 O -0.123 6.123 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.211 4.211 28 C -0.080 4.080 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.232 0.768 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.172 3.809 -26.138 27.370 hybrid contribution 0.916 -0.688 -0.323 1.191 sum -6.256 3.120 -26.461 27.369 Atomic orbital electron populations 1.21389 0.91513 1.02849 1.01727 1.22378 0.97399 0.94630 0.93648 1.21718 1.00095 0.95102 1.02607 1.23586 0.93094 0.95956 0.84852 0.90316 1.86515 1.46909 1.67962 1.34713 1.24116 1.03481 0.97715 0.96786 1.21711 0.84572 0.94478 0.96710 0.87505 1.45838 1.15013 1.56136 1.20704 1.21066 0.89503 0.79366 0.80240 1.90753 1.60421 1.36673 1.51144 1.20428 0.92792 1.02123 0.96768 1.18691 1.08497 0.96684 0.92475 1.20564 0.96921 0.98330 0.91755 1.21223 1.07073 0.97439 0.98113 1.19126 0.92582 0.91600 0.85660 1.83569 1.76248 1.40598 1.11878 1.20775 1.42278 0.99915 0.83428 0.87627 1.24467 0.96433 0.99349 0.93803 1.69648 1.46235 1.36715 0.99251 0.86179 0.79688 0.83261 0.77765 1.19905 1.20803 1.18353 1.20147 1.09373 1.01207 0.90355 1.20389 0.97530 0.94098 0.95950 0.92295 0.91847 0.91775 0.92655 0.91986 0.91666 0.77658 0.90794 0.88482 0.76774 0.88808 0.88901 0.87534 0.84962 0.91090 0.86566 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.46 37.16 0.31 -0.59 16 2 C -0.08 -0.60 1.34 -153.70 -0.21 -0.80 16 3 C -0.14 -0.88 8.58 37.16 0.32 -0.56 16 4 C 0.08 0.57 4.52 -25.92 -0.12 0.45 16 5 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 6 O -0.56 -3.85 12.76 -35.23 -0.45 -4.30 16 7 C -0.18 -1.48 7.36 -25.91 -0.19 -1.67 16 8 C 0.13 1.23 3.74 -67.12 -0.25 0.98 16 9 H 0.11 1.26 7.49 -51.93 -0.39 0.87 16 10 N -0.72 -6.56 4.82 -53.02 -0.26 -6.81 16 11 C 0.51 6.65 7.82 -10.98 -0.09 6.56 16 12 O -0.52 -9.40 15.67 5.56 0.09 -9.31 16 13 C -0.08 -0.95 5.83 -29.04 -0.17 -1.12 16 14 C -0.16 -2.72 4.38 -104.58 -0.46 -3.18 16 15 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 16 C -0.22 -4.90 9.17 -39.40 -0.36 -5.27 16 17 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.22 -5.91 8.59 0.06 0.00 -5.91 16 19 C -0.39 -11.17 9.95 30.89 0.31 -10.87 16 20 H 0.11 3.10 5.44 -52.48 -0.29 2.81 16 21 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 23 Si 0.91 22.05 28.62 -169.99 -4.86 17.18 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.19 -3.95 9.99 -39.39 -0.39 -4.34 16 28 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 32 H 0.05 0.28 6.58 -51.93 -0.34 -0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.38 1.16 9.12 45.56 0.42 1.58 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.81 7.65 -51.93 -0.40 0.41 16 38 H 0.40 2.42 7.08 -40.82 -0.29 2.13 16 39 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 43 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -34.30 371.89 -7.24 -41.54 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.73 Total: 5.03 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.42 Total: -18.01 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.52 Total: -31.82 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.36 Total: -19.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.30 -7.24 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.850 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds