Wall clock time and date at job start Tue Mar 31 2020 12:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 112.90308 * 2 1 4 4 C 1.53776 * 113.61634 * 228.75242 * 2 1 3 5 5 H 1.08997 * 113.69469 * 156.32432 * 4 2 1 6 6 O 1.42901 * 113.61611 * 25.42480 * 4 2 1 7 7 C 1.53784 * 87.08002 * 270.88180 * 4 2 1 8 8 C 1.53775 * 113.61676 * 131.25037 * 2 1 3 9 9 H 1.08997 * 113.69553 * 203.68041 * 8 2 1 10 10 N 1.46503 * 113.61498 * 334.57205 * 8 2 1 11 11 C 1.34774 * 120.00221 * 202.00491 * 10 8 2 12 12 O 1.21280 * 119.99964 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00250 * 179.97438 * 11 10 8 14 14 C 1.50704 * 109.47297 * 179.97438 * 13 11 10 15 15 C 1.38301 * 119.92939 * 89.99561 * 14 13 11 16 16 C 1.38102 * 120.06585 * 180.02562 * 15 14 13 17 17 C 1.38871 * 119.93204 * 0.02562 * 16 15 14 18 18 O 1.35747 * 120.07076 * 179.97438 * 17 16 15 19 19 C 1.34833 * 117.00217 * 185.51587 * 18 17 16 20 20 H 1.07998 * 120.00195 * 354.91901 * 19 18 17 21 21 C 1.38661 * 119.99835 * 174.64984 * 19 18 17 22 22 N 1.31552 * 120.00169 * 0.27073 * 21 19 18 23 23 Si 1.86797 * 119.99630 * 180.27384 * 21 19 18 24 24 H 1.48503 * 109.47085 * 90.00204 * 23 21 19 25 25 H 1.48508 * 109.47114 * 209.99891 * 23 21 19 26 26 H 1.48501 * 109.47495 * 329.99578 * 23 21 19 27 27 C 1.38888 * 119.86151 * 0.27950 * 17 16 15 28 28 C 1.38100 * 119.92911 * 359.46346 * 27 17 16 29 29 H 1.08997 * 109.47399 * 288.74707 * 1 2 3 30 30 H 1.09002 * 109.46937 * 48.74873 * 1 2 3 31 31 H 1.09000 * 109.46942 * 168.74926 * 1 2 3 32 32 H 1.09004 * 109.46623 * 191.24778 * 3 2 1 33 33 H 1.08996 * 109.47255 * 311.24971 * 3 2 1 34 34 H 1.08997 * 109.47165 * 71.25553 * 3 2 1 35 35 H 0.96694 * 114.00161 * 182.99918 * 6 4 2 36 36 H 1.08996 * 113.61335 * 220.01545 * 7 4 2 37 37 H 1.09005 * 113.61631 * 89.11546 * 7 4 2 38 38 H 0.97004 * 120.00045 * 21.99454 * 10 8 2 39 39 H 1.08997 * 109.47347 * 59.99225 * 13 11 10 40 40 H 1.09003 * 109.46923 * 299.99569 * 13 11 10 41 41 H 1.07996 * 119.96651 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.03136 * 180.02562 * 16 15 14 43 43 H 0.96994 * 120.00185 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03086 * 179.72912 * 27 17 16 45 45 H 1.08000 * 119.96208 * 180.27940 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1461 -0.9290 -1.0594 5 1 3.1591 -0.6508 -1.3500 6 8 1.2919 -1.1645 -2.1805 7 6 2.0930 -2.0425 0.0000 8 6 2.1461 -0.9290 1.0593 9 1 3.1590 -0.6508 1.3501 10 7 1.2704 -1.1704 2.2088 11 6 1.7956 -1.5705 3.3837 12 8 2.9930 -1.7311 3.4894 13 6 0.8949 -1.8183 4.5663 14 6 1.7242 -2.2536 5.7469 15 6 2.2284 -1.3087 6.6220 16 6 2.9891 -1.7044 7.7045 17 6 3.2481 -3.0527 7.9136 18 8 3.9960 -3.4447 8.9765 19 6 4.3051 -4.7547 9.0576 20 1 3.8926 -5.4521 8.3436 21 6 5.1570 -5.2055 10.0544 22 7 5.6595 -4.3560 10.9242 23 14 5.5913 -7.0191 10.1621 24 1 6.8045 -7.2867 9.3485 25 1 5.8549 -7.3817 11.5779 26 1 4.4599 -7.8306 9.6457 27 6 2.7456 -3.9986 7.0295 28 6 1.9811 -3.5969 5.9518 29 1 -0.3634 0.3303 0.9731 30 1 -0.3633 0.6776 -0.7726 31 1 -0.3633 -1.0079 -0.2005 32 1 3.1954 1.3517 -0.2005 33 1 1.6427 2.0078 -0.7726 34 1 1.9627 1.8726 0.9731 35 1 1.6549 -1.7839 -2.8282 36 1 2.9717 -2.6874 -0.0001 37 1 1.1569 -2.6010 0.0000 38 1 0.3126 -1.0422 2.1242 39 1 0.1771 -2.6003 4.3188 40 1 0.3613 -0.9009 4.8151 41 1 2.0277 -0.2603 6.4581 42 1 3.3822 -0.9661 8.3877 43 1 6.2552 -4.6714 11.6217 44 1 2.9490 -5.0475 7.1871 45 1 1.5864 -4.3324 5.2665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190501072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:13 Heat of formation + Delta-G solvation = -99.134577 kcal Electronic energy + Delta-G solvation = -26064.864447 eV Core-core repulsion = 22240.501356 eV Total energy + Delta-G solvation = -3824.363091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69135 -40.82947 -39.88151 -38.15124 -36.41701 -34.41919 -34.24359 -32.72190 -31.77339 -31.41897 -28.45790 -28.29604 -27.10458 -24.98015 -23.63471 -23.57919 -22.45683 -21.24467 -19.85941 -19.67175 -18.83242 -18.50706 -17.87629 -16.88675 -16.62618 -16.34020 -16.08881 -15.87629 -15.85224 -15.51176 -15.39481 -14.99521 -14.79828 -14.42695 -14.22780 -14.18161 -13.83036 -13.60005 -13.50805 -13.20222 -13.00707 -12.95404 -12.82242 -12.57465 -12.47282 -12.28426 -12.24506 -12.11837 -12.01068 -11.70268 -11.35938 -11.17807 -10.90564 -10.76293 -10.61688 -9.93348 -9.75715 -8.89314 -8.47509 -6.15636 0.62068 0.67941 1.33369 1.43274 1.51334 1.73408 2.17277 2.25660 2.85179 3.16917 3.26452 3.34236 3.53150 3.64999 3.80356 3.85543 3.91262 4.06241 4.17066 4.22053 4.25022 4.48506 4.49704 4.54775 4.61093 4.65647 4.72151 4.79480 4.81210 4.90394 4.95944 5.04713 5.07627 5.11230 5.13122 5.15017 5.31232 5.37040 5.46818 5.56958 5.61280 5.72071 5.78775 6.02927 6.23789 6.64965 6.90507 6.97016 7.38209 7.78651 8.76054 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.002254 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.550257 B =12421.982623 C =12880.123466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 C -0.139 4.139 4 C 0.093 3.907 5 H 0.092 0.908 6 O -0.565 6.565 7 C -0.180 4.180 8 C 0.124 3.876 9 H 0.092 0.908 10 N -0.706 5.706 11 C 0.511 3.489 12 O -0.580 6.580 13 C -0.079 4.079 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.252 1.252 27 C -0.244 4.244 28 C -0.060 4.060 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.416 0.584 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.117 0.883 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 7.549 -26.664 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.196 4.196 4 C 0.033 3.967 5 H 0.110 0.890 6 O -0.372 6.372 7 C -0.219 4.219 8 C 0.018 3.982 9 H 0.110 0.890 10 N -0.360 5.360 11 C 0.299 3.701 12 O -0.459 6.459 13 C -0.118 4.118 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.176 1.176 27 C -0.263 4.263 28 C -0.078 4.078 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.164 0.836 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.389 7.989 -25.910 30.239 hybrid contribution 0.863 -1.152 0.281 1.467 sum -12.525 6.837 -25.630 29.334 Atomic orbital electron populations 1.21401 0.91299 1.02880 1.02277 1.22365 0.97809 0.94714 0.92702 1.21772 1.00719 0.94670 1.02438 1.23211 0.93806 0.94902 0.84749 0.89041 1.86452 1.47241 1.68683 1.34850 1.24122 1.03159 0.97945 0.96689 1.22246 0.95094 0.96676 0.84149 0.88994 1.45840 1.11518 1.68861 1.09765 1.21217 0.88871 0.75320 0.84671 1.90748 1.18231 1.52303 1.84577 1.20550 0.96578 1.05977 0.88731 1.19258 1.04367 0.92669 0.98272 1.20876 0.94553 0.99949 0.92173 1.20441 1.07178 0.92408 1.02549 1.19940 0.91582 0.94656 0.87715 1.83937 1.62427 1.28204 1.39485 1.21821 1.29572 0.81350 1.16285 0.88298 1.26619 0.95207 1.05829 0.94526 1.70185 1.31723 1.37341 1.16735 0.84580 0.79346 0.73781 0.78431 1.19011 1.19299 1.17553 1.21226 1.06313 0.99400 0.99392 1.20927 0.95494 0.96324 0.95105 0.91190 0.91665 0.91831 0.92310 0.91357 0.92199 0.75621 0.91680 0.88584 0.74545 0.85410 0.85073 0.83555 0.87012 0.91830 0.86537 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 7.46 71.98 0.54 -0.71 16 2 C -0.08 -0.95 1.35 -51.66 -0.07 -1.02 16 3 C -0.14 -1.68 9.20 71.98 0.66 -1.02 16 4 C 0.09 1.13 4.62 31.12 0.14 1.27 16 5 H 0.09 0.98 7.97 -2.39 -0.02 0.96 16 6 O -0.56 -6.42 12.76 -148.98 -1.90 -8.32 16 7 C -0.18 -2.68 7.36 31.12 0.23 -2.45 16 8 C 0.12 2.12 3.65 45.51 0.17 2.29 16 9 H 0.09 2.06 7.49 -2.39 -0.02 2.05 16 10 N -0.71 -11.53 5.26 -440.05 -2.31 -13.85 16 11 C 0.51 12.40 7.82 87.66 0.69 13.08 16 12 O -0.58 -21.00 15.67 -3.03 -0.05 -21.05 16 13 C -0.08 -1.58 5.83 29.10 0.17 -1.41 16 14 C -0.14 -4.67 4.38 -19.83 -0.09 -4.75 16 15 C -0.06 -2.05 9.69 22.25 0.22 -1.84 16 16 C -0.21 -9.42 9.99 22.39 0.22 -9.20 16 17 C 0.11 5.90 6.65 22.58 0.15 6.05 16 18 O -0.23 -14.77 9.76 -22.74 -0.22 -15.00 16 19 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 20 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 21 C -0.02 -1.45 5.49 84.84 0.47 -0.99 16 22 N -0.92 -58.32 13.67 21.61 0.30 -58.03 16 23 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 27 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16 28 C -0.06 -2.22 9.69 22.25 0.22 -2.01 16 29 H 0.07 0.53 7.04 -2.39 -0.02 0.51 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.68 7.18 -2.39 -0.02 0.66 16 32 H 0.06 0.71 7.95 -2.39 -0.02 0.69 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.39 1.53 9.12 -74.06 -0.68 0.85 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.37 7.65 -2.38 -0.02 1.35 16 38 H 0.42 4.07 6.58 -92.71 -0.61 3.46 16 39 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 40 H 0.13 1.74 8.09 -2.39 -0.02 1.72 16 41 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 45 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -84.26 372.87 2.14 -82.13 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.26 Total: 26.14 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 4.56 Total: -38.44 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.02 Total: -71.87 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -2.17 Total: -44.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -84.26 2.14 -82.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.006 kcal (2) G-P(sol) polarization free energy of solvation -84.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds