Wall clock time and date at job start Tue Mar 31 2020 13:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53003 * 109.47040 * 184.99930 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47547 * 64.99705 * 3 2 1 7 7 C 1.50700 * 109.46927 * 59.99885 * 6 3 2 8 8 O 1.20820 * 120.00286 * 0.02562 * 7 6 3 9 9 O 1.34230 * 119.99784 * 180.02562 * 7 6 3 10 10 N 1.46503 * 109.46508 * 304.99433 * 3 2 1 11 11 C 1.34776 * 120.00206 * 299.99738 * 10 3 2 12 12 O 1.21584 * 119.99995 * 0.02562 * 11 10 3 13 13 C 1.47645 * 119.99781 * 180.02562 * 11 10 3 14 14 C 1.40015 * 119.89622 * 180.02562 * 13 11 10 15 15 C 1.36312 * 120.10903 * 180.25483 * 14 13 11 16 16 C 1.40889 * 119.89023 * 359.51799 * 15 14 13 17 17 C 1.41106 * 120.10458 * 180.23341 * 16 15 14 18 18 H 1.08007 * 120.00193 * 204.78818 * 17 16 15 19 19 C 1.40223 * 120.00235 * 24.78377 * 17 16 15 20 20 N 1.30654 * 119.99604 * 17.73952 * 19 17 16 21 21 Si 1.86796 * 120.00554 * 197.73682 * 19 17 16 22 22 H 1.48507 * 109.46968 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47125 * 119.99967 * 21 19 17 24 24 H 1.48490 * 109.47417 * 240.00293 * 21 19 17 25 25 C 1.40894 * 119.79412 * 0.49663 * 16 15 14 26 26 C 1.36312 * 119.88940 * 359.73804 * 25 16 15 27 27 H 1.09005 * 109.46978 * 60.00213 * 1 2 3 28 28 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47478 * 300.00427 * 1 2 3 30 30 H 1.08998 * 109.47478 * 239.99573 * 2 1 3 31 31 H 1.09000 * 109.46839 * 119.99324 * 2 1 3 32 32 H 1.08999 * 109.47101 * 299.99590 * 4 3 2 33 33 H 1.09005 * 109.47364 * 59.99807 * 4 3 2 34 34 H 1.08999 * 109.47152 * 299.99954 * 5 4 3 35 35 H 1.08997 * 109.47068 * 59.99646 * 5 4 3 36 36 H 1.09000 * 109.46934 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47359 * 180.02562 * 6 3 2 38 38 H 1.09009 * 109.46766 * 300.00055 * 6 3 2 39 39 H 0.96695 * 116.99993 * 180.02562 * 9 7 6 40 40 H 0.97004 * 119.99715 * 120.00787 * 10 3 2 41 41 H 1.08001 * 119.94049 * 359.96968 * 14 13 11 42 42 H 1.08000 * 120.05443 * 179.71603 * 15 14 13 43 43 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.05459 * 179.70916 * 25 16 15 45 45 H 1.08002 * 119.94993 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0748 2.8868 -0.1264 6 6 1.6352 2.1267 1.3072 7 6 2.2361 1.3814 2.4712 8 8 2.9184 0.4038 2.2752 9 8 2.0132 1.8038 3.7256 10 7 1.4559 2.1669 -1.1316 11 6 1.6793 1.7425 -2.3911 12 8 2.3653 0.7582 -2.5882 13 6 1.0911 2.4729 -3.5314 14 6 1.3242 2.0298 -4.8390 15 6 0.7875 2.7039 -5.8953 16 6 -0.0112 3.8422 -5.6691 17 6 -0.5731 4.5405 -6.7590 18 1 -0.8297 5.5846 -6.6569 19 6 -0.7983 3.8788 -7.9746 20 7 -0.8234 2.5731 -8.0128 21 14 -1.0623 4.8641 -9.5395 22 1 -0.9863 6.3146 -9.2299 23 1 -0.0112 4.5138 -10.5283 24 1 -2.3986 4.5474 -10.1043 25 6 -0.2427 4.2844 -4.3516 26 6 0.3022 3.6066 -3.3019 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.9994 0.9053 0.7161 33 1 3.8533 0.9569 -1.0571 34 1 3.6402 3.4255 -0.9684 35 1 3.7864 3.3746 0.8048 36 1 5.1612 2.8881 -0.2154 37 1 1.9982 3.1544 1.3070 38 1 0.5488 2.1254 1.3967 39 1 2.4198 1.2937 4.4394 40 1 0.9084 2.9520 -0.9742 41 1 1.9340 1.1552 -5.0112 42 1 0.9717 2.3640 -6.9038 43 1 -0.9795 2.1154 -8.8536 44 1 -0.8505 5.1592 -4.1736 45 1 0.1257 3.9450 -2.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262091440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:06 Heat of formation + Delta-G solvation = -119.414291 kcal Electronic energy + Delta-G solvation = -27353.056872 eV Core-core repulsion = 23527.814387 eV Total energy + Delta-G solvation = -3825.242485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.06291 -39.47986 -37.62606 -36.63407 -35.76095 -33.89619 -32.11775 -32.01398 -30.01022 -29.72505 -29.37758 -26.31669 -25.39373 -22.87874 -21.91844 -21.77606 -21.01998 -19.87432 -18.86277 -18.31728 -17.49831 -17.00073 -16.44555 -16.40608 -15.43678 -15.25705 -14.87131 -14.42260 -14.23818 -13.98094 -13.41637 -13.37578 -13.12011 -12.99241 -12.70113 -12.69247 -12.55848 -12.20576 -12.12112 -11.89510 -11.87458 -11.39746 -11.34391 -11.31370 -11.24012 -10.97927 -10.68877 -10.63730 -10.51643 -10.24779 -10.23084 -10.00345 -9.54333 -9.33472 -8.74040 -8.53415 -7.69913 -7.56361 -7.02064 -4.60137 1.98706 2.24636 2.69684 2.90316 2.95693 3.00820 3.03115 3.74403 3.89332 3.90466 4.42165 4.56784 4.78528 4.87035 5.18991 5.27147 5.35531 5.52334 5.54180 5.58170 5.63020 5.69618 5.89115 5.97128 6.05402 6.08501 6.18002 6.18486 6.28643 6.37149 6.44757 6.47867 6.63334 6.68658 6.80533 6.84612 7.04159 7.07302 7.11682 7.43874 7.61698 7.68831 7.79695 7.88271 8.05614 8.27488 8.43603 8.63329 8.75750 9.12941 9.89833 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002751 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.088569 B =10175.026552 C =10256.155186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.201 3.799 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.126 4.126 7 C 0.485 3.515 8 O -0.498 6.498 9 O -0.519 6.519 10 N -0.733 5.733 11 C 0.579 3.421 12 O -0.563 6.563 13 C -0.282 4.282 14 C -0.036 4.036 15 C -0.183 4.183 16 C 0.128 3.872 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.769 5.769 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.235 4.235 26 C -0.050 4.050 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.409 0.591 40 H 0.394 0.606 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 0.803 15.690 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.115 3.885 4 C -0.187 4.187 5 C -0.207 4.207 6 C -0.163 4.163 7 C 0.328 3.672 8 O -0.386 6.386 9 O -0.331 6.331 10 N -0.386 5.386 11 C 0.373 3.627 12 O -0.444 6.444 13 C -0.287 4.287 14 C -0.055 4.055 15 C -0.202 4.202 16 C 0.125 3.875 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.148 4.148 20 N -0.392 5.392 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.255 4.255 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.268 0.732 40 H 0.229 0.771 41 H 0.118 0.882 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.856 -0.148 15.013 15.283 hybrid contribution -0.327 0.486 -0.138 0.602 sum 2.529 0.338 14.875 15.092 Atomic orbital electron populations 1.21772 0.96248 1.01271 1.01360 1.22189 0.95582 0.95852 1.04894 1.19859 0.93768 0.91807 0.83089 1.22205 0.93774 0.97529 1.05175 1.21789 1.00686 0.97138 1.01086 1.21676 1.03308 1.01108 0.90256 1.23107 0.77763 0.82796 0.83572 1.90652 1.36442 1.26397 1.85105 1.84535 1.72145 1.59222 1.17225 1.45923 1.54990 1.32352 1.05333 1.18436 0.78950 0.83268 0.81998 1.90589 1.40841 1.27766 1.85231 1.18926 1.14265 1.03057 0.92420 1.20474 0.96374 0.97151 0.91500 1.21012 1.01567 0.99534 0.98087 1.17780 0.87406 0.90633 0.91690 1.19859 1.34200 0.98131 0.94930 0.89769 1.26104 0.92507 0.94942 1.01235 1.69760 1.31479 1.09047 1.28928 0.86184 0.78817 0.81108 0.80308 1.18100 1.19369 1.19686 1.20659 1.08139 1.03903 0.92783 1.20349 0.95640 0.94240 0.96677 0.92104 0.93125 0.93847 0.89323 0.89852 0.89708 0.89192 0.92207 0.93834 0.93082 0.86930 0.87003 0.73188 0.77145 0.88229 0.86250 0.90231 0.88597 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.45 37.16 0.35 -1.65 16 2 C -0.15 -2.17 4.44 -26.73 -0.12 -2.29 16 3 C 0.20 2.71 0.19 -131.82 -0.02 2.68 16 4 C -0.15 -2.17 4.48 -26.73 -0.12 -2.29 16 5 C -0.15 -1.92 9.40 37.16 0.35 -1.57 16 6 C -0.13 -1.25 4.40 -27.89 -0.12 -1.37 16 7 C 0.49 4.92 7.71 36.01 0.28 5.20 16 8 O -0.50 -6.36 12.12 -18.75 -0.23 -6.59 16 9 O -0.52 -3.87 13.42 -39.26 -0.53 -4.40 16 10 N -0.73 -11.00 3.36 -48.60 -0.16 -11.16 16 11 C 0.58 11.43 6.97 -12.42 -0.09 11.34 16 12 O -0.56 -12.56 12.58 5.29 0.07 -12.50 16 13 C -0.28 -6.17 5.89 -104.72 -0.62 -6.79 16 14 C -0.04 -0.85 9.52 -39.61 -0.38 -1.23 16 15 C -0.18 -4.61 8.63 -39.27 -0.34 -4.95 16 16 C 0.13 3.21 5.57 -106.80 -0.60 2.62 16 17 C -0.44 -10.92 9.04 -37.75 -0.34 -11.26 16 18 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 19 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 20 N -0.77 -18.71 10.96 55.56 0.61 -18.10 16 21 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 C -0.24 -5.30 9.73 -39.27 -0.38 -5.68 16 26 C -0.05 -1.02 9.47 -39.61 -0.38 -1.39 16 27 H 0.06 0.92 7.29 -51.93 -0.38 0.55 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.48 6.56 -51.93 -0.34 0.14 16 30 H 0.09 1.60 6.32 -51.93 -0.33 1.27 16 31 H 0.08 1.21 5.42 -51.93 -0.28 0.93 16 32 H 0.08 1.23 5.52 -51.93 -0.29 0.94 16 33 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 34 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 35 H 0.04 0.46 6.43 -51.93 -0.33 0.13 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.95 6.43 -51.93 -0.33 0.62 16 38 H 0.11 0.95 6.57 -51.92 -0.34 0.61 16 39 H 0.41 1.38 9.10 45.56 0.41 1.79 16 40 H 0.39 5.10 6.47 -40.82 -0.26 4.83 16 41 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 42 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 43 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 44 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.09 1.44 6.37 -52.49 -0.33 1.11 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -29.38 353.99 -7.61 -37.00 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.06 Total: 15.15 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.61 Total: -17.00 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 0.45 Total: -29.26 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.69 Total: -23.48 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.38 -7.61 -37.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262091440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.419 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds