Wall clock time and date at job start Tue Mar 31 2020 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53003 * 109.47040 * 184.99930 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47547 * 64.99705 * 3 2 1 7 7 C 1.50700 * 109.46927 * 59.99885 * 6 3 2 8 8 O 1.20820 * 120.00286 * 0.02562 * 7 6 3 9 9 O 1.34230 * 119.99784 * 180.02562 * 7 6 3 10 10 N 1.46503 * 109.46508 * 304.99433 * 3 2 1 11 11 C 1.34776 * 120.00206 * 299.99738 * 10 3 2 12 12 O 1.21584 * 119.99995 * 0.02562 * 11 10 3 13 13 C 1.47645 * 119.99781 * 180.02562 * 11 10 3 14 14 C 1.40015 * 119.89622 * 180.02562 * 13 11 10 15 15 C 1.36312 * 120.10903 * 180.25483 * 14 13 11 16 16 C 1.40889 * 119.89023 * 359.51799 * 15 14 13 17 17 C 1.41106 * 120.10458 * 180.23341 * 16 15 14 18 18 H 1.08007 * 120.00193 * 204.78818 * 17 16 15 19 19 C 1.40223 * 120.00235 * 24.78377 * 17 16 15 20 20 N 1.30654 * 119.99604 * 17.73952 * 19 17 16 21 21 Si 1.86796 * 120.00554 * 197.73682 * 19 17 16 22 22 H 1.48507 * 109.46968 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47125 * 119.99967 * 21 19 17 24 24 H 1.48490 * 109.47417 * 240.00293 * 21 19 17 25 25 C 1.40894 * 119.79412 * 0.49663 * 16 15 14 26 26 C 1.36312 * 119.88940 * 359.73804 * 25 16 15 27 27 H 1.09005 * 109.46978 * 60.00213 * 1 2 3 28 28 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47478 * 300.00427 * 1 2 3 30 30 H 1.08998 * 109.47478 * 239.99573 * 2 1 3 31 31 H 1.09000 * 109.46839 * 119.99324 * 2 1 3 32 32 H 1.08999 * 109.47101 * 299.99590 * 4 3 2 33 33 H 1.09005 * 109.47364 * 59.99807 * 4 3 2 34 34 H 1.08999 * 109.47152 * 299.99954 * 5 4 3 35 35 H 1.08997 * 109.47068 * 59.99646 * 5 4 3 36 36 H 1.09000 * 109.46934 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47359 * 180.02562 * 6 3 2 38 38 H 1.09009 * 109.46766 * 300.00055 * 6 3 2 39 39 H 0.96695 * 116.99993 * 180.02562 * 9 7 6 40 40 H 0.97004 * 119.99715 * 120.00787 * 10 3 2 41 41 H 1.08001 * 119.94049 * 359.96968 * 14 13 11 42 42 H 1.08000 * 120.05443 * 179.71603 * 15 14 13 43 43 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.05459 * 179.70916 * 25 16 15 45 45 H 1.08002 * 119.94993 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0748 2.8868 -0.1264 6 6 1.6352 2.1267 1.3072 7 6 2.2361 1.3814 2.4712 8 8 2.9184 0.4038 2.2752 9 8 2.0132 1.8038 3.7256 10 7 1.4559 2.1669 -1.1316 11 6 1.6793 1.7425 -2.3911 12 8 2.3653 0.7582 -2.5882 13 6 1.0911 2.4729 -3.5314 14 6 1.3242 2.0298 -4.8390 15 6 0.7875 2.7039 -5.8953 16 6 -0.0112 3.8422 -5.6691 17 6 -0.5731 4.5405 -6.7590 18 1 -0.8297 5.5846 -6.6569 19 6 -0.7983 3.8788 -7.9746 20 7 -0.8234 2.5731 -8.0128 21 14 -1.0623 4.8641 -9.5395 22 1 -0.9863 6.3146 -9.2299 23 1 -0.0112 4.5138 -10.5283 24 1 -2.3986 4.5474 -10.1043 25 6 -0.2427 4.2844 -4.3516 26 6 0.3022 3.6066 -3.3019 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.9994 0.9053 0.7161 33 1 3.8533 0.9569 -1.0571 34 1 3.6402 3.4255 -0.9684 35 1 3.7864 3.3746 0.8048 36 1 5.1612 2.8881 -0.2154 37 1 1.9982 3.1544 1.3070 38 1 0.5488 2.1254 1.3967 39 1 2.4198 1.2937 4.4394 40 1 0.9084 2.9520 -0.9742 41 1 1.9340 1.1552 -5.0112 42 1 0.9717 2.3640 -6.9038 43 1 -0.9795 2.1154 -8.8536 44 1 -0.8505 5.1592 -4.1736 45 1 0.1257 3.9450 -2.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262091440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:05 Heat of formation + Delta-G solvation = -136.993605 kcal Electronic energy + Delta-G solvation = -27353.819168 eV Core-core repulsion = 23527.814387 eV Total energy + Delta-G solvation = -3826.004782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03784 -40.74277 -39.19692 -37.83301 -36.76731 -35.66189 -33.54329 -33.13951 -31.79141 -31.13022 -30.62027 -27.86054 -26.68758 -24.19387 -23.23842 -22.90127 -22.68743 -21.29831 -20.21689 -19.28960 -19.04401 -18.51579 -17.25779 -17.20961 -17.10861 -16.41505 -16.28703 -15.85382 -15.66442 -15.42313 -14.96716 -14.74111 -14.31259 -14.29758 -14.09843 -13.94088 -13.70342 -13.62747 -13.54202 -13.17869 -12.96088 -12.81945 -12.73755 -12.61049 -12.37937 -12.36305 -12.31606 -11.79508 -11.78496 -11.62356 -11.35927 -11.32307 -11.20118 -11.10175 -10.30363 -9.91225 -9.52612 -9.36652 -8.76934 -6.45384 0.50545 1.19084 1.24732 1.38099 1.42595 1.55152 1.88526 2.14914 2.22861 2.73447 2.84530 3.44616 3.73059 3.84008 3.87530 4.27629 4.34067 4.36256 4.38649 4.44401 4.49207 4.51309 4.60177 4.61664 4.64144 4.92344 4.98572 5.00410 5.05278 5.11070 5.16013 5.24236 5.26981 5.31180 5.31336 5.43143 5.46014 5.62453 5.69944 5.83044 5.84173 6.01319 6.05806 6.24067 6.59775 6.80065 6.85108 6.94381 7.06784 7.60501 8.18191 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.002751 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.088569 B =10175.026552 C =10256.155186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.200 3.800 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.122 4.122 7 C 0.493 3.507 8 O -0.532 6.532 9 O -0.509 6.509 10 N -0.710 5.710 11 C 0.580 3.420 12 O -0.594 6.594 13 C -0.288 4.288 14 C -0.052 4.052 15 C -0.204 4.204 16 C 0.100 3.900 17 C -0.474 4.474 18 H 0.091 0.909 19 C 0.033 3.967 20 N -0.806 5.806 21 Si 0.987 3.013 22 H -0.251 1.251 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.245 4.245 26 C -0.037 4.037 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.429 0.571 40 H 0.409 0.591 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.294 0.706 44 H 0.116 0.884 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 3.036 18.431 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C 0.114 3.886 4 C -0.184 4.184 5 C -0.202 4.202 6 C -0.160 4.160 7 C 0.336 3.664 8 O -0.422 6.422 9 O -0.323 6.323 10 N -0.362 5.362 11 C 0.374 3.626 12 O -0.477 6.477 13 C -0.292 4.292 14 C -0.071 4.071 15 C -0.224 4.224 16 C 0.097 3.903 17 C -0.501 4.501 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.430 5.430 21 Si 0.807 3.193 22 H -0.174 1.174 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.264 4.264 26 C -0.055 4.055 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.291 0.709 40 H 0.246 0.754 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.758 2.109 17.824 18.034 hybrid contribution 0.074 -0.306 -0.809 0.868 sum 1.832 1.803 17.015 17.208 Atomic orbital electron populations 1.21740 0.94958 1.01623 1.01882 1.22113 0.96638 0.96498 1.03011 1.19901 0.92910 0.91414 0.84333 1.22121 0.94837 0.98486 1.02990 1.21755 1.00715 0.95700 1.02040 1.21621 1.04899 1.01643 0.87807 1.23007 0.76960 0.82049 0.84372 1.90662 1.38027 1.27892 1.85665 1.84478 1.71861 1.59178 1.16757 1.45630 1.54081 1.32348 1.04172 1.18180 0.78621 0.82712 0.83130 1.90600 1.42074 1.29061 1.85955 1.19235 1.14072 1.03633 0.92274 1.20531 0.96710 0.97026 0.92844 1.20916 1.03156 1.00801 0.97492 1.18136 0.87845 0.90848 0.93446 1.20152 1.35395 0.98604 0.95998 0.89081 1.27002 0.91597 0.95744 1.04183 1.69818 1.32292 1.10713 1.30162 0.85077 0.78848 0.79599 0.75798 1.17386 1.19165 1.18841 1.20946 1.08528 1.04740 0.92227 1.20719 0.93542 0.92620 0.98653 0.94017 0.93114 0.90602 0.93564 0.89381 0.89509 0.93407 0.93585 0.90722 0.93002 0.84434 0.84580 0.70919 0.75367 0.89519 0.88240 0.89546 0.86622 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.45 71.98 0.68 -2.94 16 2 C -0.14 -4.18 4.44 30.59 0.14 -4.04 16 3 C 0.20 5.01 0.19 3.60 0.00 5.02 16 4 C -0.15 -4.17 4.48 30.60 0.14 -4.03 16 5 C -0.14 -3.42 9.40 71.98 0.68 -2.75 16 6 C -0.12 -1.89 4.40 29.85 0.13 -1.76 16 7 C 0.49 8.15 7.71 71.24 0.55 8.70 16 8 O -0.53 -12.41 12.12 21.98 0.27 -12.15 16 9 O -0.51 -5.32 13.42 -51.42 -0.69 -6.01 16 10 N -0.71 -19.86 3.36 -425.93 -1.43 -21.29 16 11 C 0.58 22.96 6.97 86.73 0.60 23.57 16 12 O -0.59 -27.63 12.58 -3.98 -0.05 -27.68 16 13 C -0.29 -12.63 5.89 -19.93 -0.12 -12.75 16 14 C -0.05 -2.60 9.52 22.25 0.21 -2.39 16 15 C -0.20 -10.85 8.63 22.47 0.19 -10.66 16 16 C 0.10 5.15 5.57 -21.28 -0.12 5.03 16 17 C -0.47 -23.76 9.04 23.46 0.21 -23.54 16 18 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 19 C 0.03 1.57 5.14 85.35 0.44 2.00 16 20 N -0.81 -40.69 10.96 21.87 0.24 -40.45 16 21 Si 0.99 35.61 29.60 68.60 2.03 37.64 16 22 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 23 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 24 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 25 C -0.25 -10.81 9.73 22.47 0.22 -10.59 16 26 C -0.04 -1.42 9.47 22.25 0.21 -1.21 16 27 H 0.04 1.20 7.29 -2.38 -0.02 1.18 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.39 6.56 -2.39 -0.02 1.37 16 30 H 0.05 1.73 6.32 -2.39 -0.02 1.72 16 31 H 0.09 2.49 5.42 -2.39 -0.01 2.47 16 32 H 0.09 2.46 5.52 -2.39 -0.01 2.45 16 33 H 0.05 1.77 6.16 -2.38 -0.01 1.76 16 34 H 0.04 1.21 7.60 -2.39 -0.02 1.19 16 35 H 0.07 1.29 6.43 -2.39 -0.02 1.27 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.14 1.52 6.43 -2.39 -0.02 1.51 16 38 H 0.14 1.53 6.57 -2.38 -0.02 1.51 16 39 H 0.43 1.16 9.10 -74.06 -0.67 0.48 16 40 H 0.41 8.93 6.47 -92.71 -0.60 8.33 16 41 H 0.09 4.46 7.63 -2.91 -0.02 4.44 16 42 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 43 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 44 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 45 H 0.14 3.89 6.37 -2.91 -0.02 3.87 16 Total: -1.00 -68.87 353.99 4.31 -64.56 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -0.22 Total: 37.73 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.17 Total: -32.36 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -1.19 Total: -61.74 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.47 Total: -45.83 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -68.87 4.31 -64.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262091440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.436 kcal (2) G-P(sol) polarization free energy of solvation -68.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds