Wall clock time and date at job start Tue Mar 31 2020 12:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00043 * 2 1 4 4 C 1.52995 * 109.52645 * 60.08283 * 3 2 1 5 5 C 1.53043 * 109.49397 * 180.16282 * 3 2 1 6 6 C 1.53039 * 109.54144 * 58.58850 * 5 3 2 7 7 C 1.52757 * 109.38335 * 61.23820 * 6 5 3 8 8 N 1.46925 * 109.00791 * 305.58776 * 7 6 5 9 9 C 1.34777 * 120.63445 * 233.58189 * 8 7 6 10 10 O 1.21583 * 120.00488 * 175.45591 * 9 8 7 11 11 C 1.47539 * 119.99655 * 355.46102 * 9 8 7 12 12 C 1.39661 * 120.19725 * 322.06277 * 11 9 8 13 13 C 1.37827 * 119.92352 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.32040 * 0.02622 * 13 12 11 15 15 C 1.38029 * 120.40003 * 359.69479 * 14 13 12 16 16 C 1.38828 * 120.07205 * 0.55780 * 15 14 13 17 17 O 1.35519 * 120.16184 * 179.74640 * 16 15 14 18 18 C 1.34811 * 117.00181 * 354.15384 * 17 16 15 19 19 H 1.08002 * 119.99835 * 356.21888 * 18 17 16 20 20 C 1.38701 * 120.00140 * 175.93514 * 18 17 16 21 21 N 1.31520 * 119.99713 * 180.27841 * 20 18 17 22 22 Si 1.86799 * 119.99984 * 0.27973 * 20 18 17 23 23 H 1.48503 * 109.46939 * 89.99421 * 22 20 18 24 24 H 1.48494 * 109.47281 * 209.99617 * 22 20 18 25 25 H 1.48497 * 109.47225 * 329.99721 * 22 20 18 26 26 C 1.46927 * 118.73836 * 53.31393 * 8 7 6 27 27 H 1.08996 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47180 * 300.00249 * 1 2 3 29 29 H 1.09001 * 109.46632 * 60.00253 * 1 2 3 30 30 H 1.08997 * 109.46813 * 299.91679 * 4 3 2 31 31 H 1.09005 * 109.47090 * 59.91368 * 4 3 2 32 32 H 1.08997 * 109.47306 * 179.91882 * 4 3 2 33 33 H 1.09001 * 109.46031 * 178.60990 * 5 3 2 34 34 H 1.09001 * 109.46390 * 298.57525 * 5 3 2 35 35 H 1.09002 * 109.49697 * 181.31894 * 6 5 3 36 36 H 1.09003 * 109.49503 * 301.38049 * 6 5 3 37 37 H 1.09004 * 109.51083 * 185.71013 * 7 6 5 38 38 H 1.08995 * 109.43208 * 65.43041 * 7 6 5 39 39 H 1.08002 * 120.04005 * 359.95573 * 12 11 9 40 40 H 1.07998 * 119.84186 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.79853 * 179.97438 * 14 13 12 42 42 H 1.08006 * 119.96343 * 180.30544 * 15 14 13 43 43 H 0.97003 * 119.99289 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.58656 * 66.42848 * 26 8 7 45 45 H 1.09003 * 109.58777 * 186.71436 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5612 2.0651 1.2498 5 6 3.5359 1.1852 -0.0041 6 6 3.9840 0.3970 -1.2371 7 6 3.5540 1.1425 -2.4991 8 7 2.1080 1.3949 -2.4366 9 6 1.2999 1.0131 -3.4454 10 8 0.0961 1.1526 -3.3463 11 6 1.8760 0.4257 -4.6700 12 6 3.0779 0.9155 -5.1858 13 6 3.6113 0.3622 -6.3299 14 6 2.9605 -0.6787 -6.9727 15 6 1.7750 -1.1769 -6.4713 16 6 1.2202 -0.6284 -5.3230 17 8 0.0536 -1.1128 -4.8320 18 6 -0.5808 -2.0455 -5.5702 19 1 -0.1880 -2.3293 -6.5354 20 6 -1.7348 -2.6449 -5.0877 21 7 -2.3507 -3.5587 -5.8055 22 14 -2.4142 -2.1541 -3.4182 23 1 -3.3663 -1.0264 -3.5834 24 1 -3.1185 -3.3116 -2.8107 25 1 -1.2980 -1.7339 -2.5336 26 6 1.5587 2.0662 -1.2506 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.4748 2.1529 1.2508 31 1 1.8828 1.5234 2.1394 32 1 2.0062 3.0601 1.2497 33 1 3.9786 2.1809 -0.0290 34 1 3.8617 0.6655 0.8970 35 1 5.0689 0.2917 -1.2270 36 1 3.5224 -0.5904 -1.2251 37 1 3.7814 0.5357 -3.3757 38 1 4.0882 2.0906 -2.5600 39 1 3.5886 1.7272 -4.6890 40 1 4.5406 0.7423 -6.7279 41 1 3.3859 -1.1058 -7.8689 42 1 1.2762 -1.9917 -6.9752 43 1 -3.1579 -3.9776 -5.4682 44 1 1.9268 3.0912 -1.2076 45 1 0.4700 2.0709 -1.3048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279318910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:02 Heat of formation + Delta-G solvation = -88.964476 kcal Electronic energy + Delta-G solvation = -28701.918301 eV Core-core repulsion = 24877.996219 eV Total energy + Delta-G solvation = -3823.922082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.86408 -40.76706 -39.37618 -38.21788 -37.12848 -34.55434 -34.04617 -32.67773 -31.94276 -30.85437 -28.27301 -27.89620 -27.20670 -26.58903 -24.21049 -23.24355 -22.89804 -21.38333 -20.43855 -19.93469 -18.84547 -18.16309 -17.54982 -17.06278 -16.67745 -16.57364 -16.39773 -16.11679 -15.75212 -15.54480 -15.49195 -15.25090 -14.92842 -14.56652 -14.39372 -14.17915 -14.02164 -13.80543 -13.61556 -13.57914 -13.15836 -13.01466 -12.80499 -12.77951 -12.63313 -12.46179 -12.31671 -12.15828 -11.81811 -11.73439 -11.55023 -11.26228 -11.00927 -10.87430 -10.55107 -9.82587 -9.50532 -9.15154 -8.61083 -6.29246 0.12144 0.62005 1.16283 1.23933 1.42570 1.79381 2.11007 2.20189 2.69954 2.79081 3.00312 3.07296 3.51426 3.76128 3.84794 3.86294 4.02735 4.12458 4.18832 4.22283 4.29032 4.34482 4.43922 4.48865 4.53155 4.55781 4.58897 4.74614 4.75321 4.78424 4.80742 4.88417 4.91907 5.02517 5.10947 5.21628 5.23076 5.28794 5.44009 5.46334 5.57781 5.64758 5.67714 5.82343 6.14592 6.22950 6.42663 6.75334 7.27229 7.54564 8.50068 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.006291 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.491310 B = 4449.534019 C = 6334.719840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.391 6.391 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.097 4.097 6 C -0.133 4.133 7 C 0.089 3.911 8 N -0.600 5.600 9 C 0.562 3.438 10 O -0.583 6.583 11 C -0.226 4.226 12 C -0.037 4.037 13 C -0.184 4.184 14 C -0.046 4.046 15 C -0.247 4.247 16 C 0.157 3.843 17 O -0.225 6.225 18 C -0.397 4.397 19 H 0.092 0.908 20 C 0.024 3.976 21 N -0.911 5.911 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.260 1.260 25 H -0.276 1.276 26 C 0.082 3.918 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.114 0.886 43 H 0.286 0.714 44 H 0.107 0.893 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.303 13.660 11.411 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C 0.048 3.952 4 C -0.227 4.227 5 C -0.134 4.134 6 C -0.171 4.171 7 C -0.032 4.032 8 N -0.333 5.333 9 C 0.353 3.647 10 O -0.463 6.463 11 C -0.231 4.231 12 C -0.055 4.055 13 C -0.202 4.202 14 C -0.064 4.064 15 C -0.266 4.266 16 C 0.105 3.895 17 O -0.131 6.131 18 C -0.473 4.473 19 H 0.109 0.891 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.184 1.184 25 H -0.201 1.201 26 C -0.041 4.041 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.184 0.816 40 H 0.188 0.812 41 H 0.170 0.830 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.476 13.461 11.663 24.952 hybrid contribution -1.656 -0.535 0.094 1.742 sum 15.820 12.926 11.757 23.571 Atomic orbital electron populations 1.22727 0.81852 1.02019 1.00218 1.87931 1.19211 1.28949 1.94962 1.22253 0.96044 0.83026 0.93876 1.22314 1.01891 1.01914 0.96598 1.21589 0.90095 1.02836 0.98878 1.21802 1.02494 0.98604 0.94163 1.22411 0.78289 1.02289 1.00236 1.47867 1.09032 1.58901 1.17457 1.18460 0.85653 0.76748 0.83843 1.90716 1.16808 1.56667 1.82133 1.19192 1.01049 1.02445 1.00387 1.21446 0.90631 0.98112 0.95293 1.21254 1.02922 0.99112 0.96890 1.21438 0.91791 0.94523 0.98638 1.21317 1.00780 1.05279 0.99229 1.19694 0.85074 0.92184 0.92593 1.83642 1.31044 1.51917 1.46461 1.20821 1.08137 1.16672 1.01680 0.89103 1.25014 0.95773 0.94871 1.01895 1.69678 1.19854 1.26086 1.39482 0.85415 0.78610 0.77808 0.80012 1.20297 1.18442 1.20109 1.22349 0.99920 0.97116 0.84683 0.91498 0.91145 0.95829 0.92801 0.90707 0.88528 0.87006 0.90256 0.87304 0.94535 0.88779 0.87238 0.81587 0.81242 0.83023 0.86797 0.90444 0.87497 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.22 113.37 1.16 2.12 16 2 O -0.39 -12.76 9.54 -148.98 -1.42 -14.18 16 3 C 0.09 2.01 0.73 -10.72 -0.01 2.01 16 4 C -0.17 -2.80 8.26 71.98 0.59 -2.20 16 5 C -0.10 -1.58 4.92 30.62 0.15 -1.43 16 6 C -0.13 -2.56 5.92 30.53 0.18 -2.38 16 7 C 0.09 1.85 4.81 86.22 0.41 2.26 16 8 N -0.60 -18.55 2.92 -823.50 -2.40 -20.96 16 9 C 0.56 24.05 7.20 86.70 0.62 24.68 16 10 O -0.58 -30.87 14.90 11.95 0.18 -30.69 16 11 C -0.23 -9.33 5.25 -19.99 -0.10 -9.44 16 12 C -0.04 -1.04 7.34 22.52 0.17 -0.87 16 13 C -0.18 -4.59 10.03 22.25 0.22 -4.37 16 14 C -0.05 -1.42 10.03 22.30 0.22 -1.20 16 15 C -0.25 -10.77 9.13 22.36 0.20 -10.57 16 16 C 0.16 7.84 6.62 22.91 0.15 7.99 16 17 O -0.23 -13.53 7.31 -4.08 -0.03 -13.56 16 18 C -0.40 -24.82 9.92 67.93 0.67 -24.14 16 19 H 0.09 5.75 5.50 -2.91 -0.02 5.73 16 20 C 0.02 1.51 5.49 84.85 0.47 1.98 16 21 N -0.91 -56.54 13.96 21.62 0.30 -56.23 16 22 Si 0.96 51.74 28.62 68.60 1.96 53.70 16 23 H -0.28 -14.99 7.11 99.48 0.71 -14.28 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.28 -15.74 7.11 99.48 0.71 -15.04 16 26 C 0.08 2.19 4.95 86.36 0.43 2.61 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 1.86 6.42 -2.39 -0.02 1.85 16 29 H 0.02 0.95 5.72 -2.39 -0.01 0.94 16 30 H 0.05 0.98 6.55 -2.39 -0.02 0.97 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.02 7.61 -2.39 -0.02 1.00 16 37 H 0.09 2.13 4.49 -2.38 -0.01 2.12 16 38 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 39 H 0.17 3.23 6.26 -2.91 -0.02 3.21 16 40 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 42 H 0.11 5.44 5.70 -2.91 -0.02 5.42 16 43 H 0.29 16.31 8.31 -92.71 -0.77 15.54 16 44 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.15 5.15 -2.39 -0.01 2.13 16 Total: -1.00 -84.88 352.31 5.14 -79.74 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.01 Total: 15.14 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.55 Total: -12.95 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.10 Total: -77.19 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -1.27 Total: -58.44 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 1.96 Total: 53.70 kcal Total: -84.88 5.14 -79.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279318910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.227 kcal (2) G-P(sol) polarization free energy of solvation -84.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds