Wall clock time and date at job start Tue Mar 31 2020 12:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.91552 * 2 1 4 4 C 1.55125 * 111.19260 * 236.08340 * 2 1 3 5 5 N 1.47419 * 104.72573 * 279.19429 * 4 2 1 6 6 C 1.34781 * 125.65115 * 155.82225 * 5 4 2 7 7 O 1.21283 * 119.99582 * 359.71021 * 6 5 4 8 8 C 1.50696 * 120.00170 * 179.71674 * 6 5 4 9 9 C 1.50694 * 109.47339 * 179.97438 * 8 6 5 10 10 C 1.38323 * 119.96665 * 269.98066 * 9 8 6 11 11 C 1.38281 * 120.14264 * 180.02562 * 10 9 8 12 12 C 1.38130 * 120.06140 * 359.67807 * 11 10 9 13 13 C 1.38851 * 119.93412 * 0.61576 * 12 11 10 14 14 O 1.35745 * 120.07188 * 179.68000 * 13 12 11 15 15 C 1.34834 * 117.00055 * 5.24003 * 14 13 12 16 16 H 1.07999 * 119.99602 * 354.92171 * 15 14 13 17 17 C 1.38648 * 120.00406 * 174.64923 * 15 14 13 18 18 N 1.31554 * 120.00281 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47171 * 89.99999 * 19 17 15 21 21 H 1.48496 * 109.47194 * 210.00558 * 19 17 15 22 22 H 1.48507 * 109.46803 * 330.00230 * 19 17 15 23 23 C 1.38079 * 119.96666 * 89.99348 * 9 8 6 24 24 C 1.47026 * 108.70199 * 335.55024 * 5 4 2 25 25 C 1.54325 * 107.27173 * 1.28972 * 24 5 4 26 26 H 1.08996 * 110.71749 * 140.54894 * 25 24 5 27 27 O 1.42893 * 110.72203 * 263.82827 * 25 24 5 28 28 H 1.08995 * 109.47658 * 296.10023 * 1 2 3 29 29 H 1.09003 * 109.46955 * 56.10214 * 1 2 3 30 30 H 1.09003 * 109.47230 * 176.10091 * 1 2 3 31 31 H 1.08995 * 109.47041 * 183.90420 * 3 2 1 32 32 H 1.08998 * 109.46702 * 303.90249 * 3 2 1 33 33 H 1.08998 * 109.47209 * 63.89470 * 3 2 1 34 34 H 1.09003 * 110.49239 * 160.34945 * 4 2 1 35 35 H 1.09002 * 110.34215 * 37.95858 * 4 2 1 36 36 H 1.09000 * 109.47387 * 59.99241 * 8 6 5 37 37 H 1.09007 * 109.47051 * 299.99609 * 8 6 5 38 38 H 1.08003 * 119.93024 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.96915 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.02710 * 180.29635 * 12 11 10 41 41 H 0.97000 * 120.00031 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.03298 * 359.97438 * 23 9 8 43 43 H 1.09004 * 109.87631 * 120.70422 * 24 5 4 44 44 H 1.08997 * 109.88720 * 241.87106 * 24 5 4 45 45 H 0.96707 * 113.99599 * 298.55043 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8070 -1.2002 5 7 2.0138 -2.2159 -0.7732 6 6 1.9471 -3.2830 -1.5938 7 8 1.9420 -3.1239 -2.7962 8 6 1.8788 -4.6737 -1.0175 9 6 1.8114 -5.6791 -2.1380 10 6 0.5840 -6.0758 -2.6374 11 6 0.5179 -6.9986 -3.6652 12 6 1.6785 -7.5221 -4.2008 13 6 2.9120 -7.1306 -3.6975 14 8 4.0541 -7.6482 -4.2173 15 6 3.9278 -8.4538 -5.2912 16 1 2.9460 -8.7269 -5.6487 17 6 5.0582 -8.9270 -5.9397 18 7 4.9349 -9.7126 -6.9877 19 14 6.7564 -8.4479 -5.3262 20 1 7.2191 -9.4412 -4.3240 21 1 7.7051 -8.4180 -6.4682 22 1 6.6947 -7.1033 -4.6986 23 6 2.9749 -6.2037 -2.6649 24 6 2.0285 -2.2646 0.6962 25 6 2.0861 -0.8079 1.2024 26 1 1.4522 -0.6791 2.0797 27 8 3.4326 -0.4251 1.4891 28 1 -0.3634 0.4521 0.9228 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0699 31 1 3.1636 1.4025 -0.0700 32 1 1.6704 1.9731 -0.8530 33 1 1.7835 1.9300 0.9228 34 1 3.1253 -0.5267 -1.3986 35 1 1.4764 -0.6450 -2.0859 36 1 0.9897 -4.7652 -0.3937 37 1 2.7669 -4.8609 -0.4138 38 1 -0.3247 -5.6646 -2.2233 39 1 -0.4419 -7.3066 -4.0528 40 1 1.6264 -8.2392 -5.0067 41 1 5.7258 -10.0433 -7.4416 42 1 3.9330 -5.8934 -2.2746 43 1 1.1217 -2.7479 1.0600 44 1 2.9063 -2.8116 1.0403 45 1 3.8526 -0.9534 2.1818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279375696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:41 Heat of formation + Delta-G solvation = -84.735663 kcal Electronic energy + Delta-G solvation = -26579.789710 eV Core-core repulsion = 22756.051003 eV Total energy + Delta-G solvation = -3823.738707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67919 -39.28093 -38.40833 -36.57789 -35.72267 -33.94177 -32.38344 -32.03043 -29.43429 -29.24353 -27.92891 -27.55603 -25.88201 -25.04969 -23.31333 -21.76020 -20.87226 -19.71810 -19.28013 -17.84855 -17.62861 -17.10301 -16.91568 -16.04947 -15.37144 -15.23788 -15.15080 -14.87006 -14.68042 -14.21910 -13.82216 -13.72738 -13.62527 -13.38645 -13.18699 -12.76143 -12.69119 -12.54804 -12.50834 -12.39106 -12.19482 -12.11877 -11.66298 -11.45137 -11.32725 -11.26452 -10.81297 -10.79333 -10.77453 -10.65192 -10.59323 -10.11276 -9.73560 -9.33936 -8.82411 -8.76990 -8.10402 -7.31020 -6.36090 -4.02803 2.03995 2.33040 2.71284 2.90154 3.26799 3.28445 3.44993 3.56877 3.98481 4.06970 4.28728 4.41559 4.48986 4.71932 4.75267 4.80890 4.87808 4.92197 5.12786 5.13553 5.17112 5.23031 5.27326 5.33897 5.44124 5.46872 5.57659 5.60449 5.62513 5.72377 5.73433 5.81020 5.87696 5.99419 6.14233 6.17321 6.29879 6.57338 6.83281 7.14200 7.17244 7.25484 7.35739 7.39543 7.65602 7.86003 8.09651 8.23350 8.99533 9.62596 10.71808 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.002753 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.995342 B =10167.725798 C =10914.067114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.118 3.882 5 N -0.623 5.623 6 C 0.529 3.471 7 O -0.515 6.515 8 C -0.088 4.088 9 C -0.036 4.036 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.217 4.217 13 C 0.160 3.840 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.173 4.173 24 C 0.070 3.930 25 C 0.099 3.901 26 H 0.078 0.922 27 O -0.553 6.553 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.279 0.721 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 18.793 20.631 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.185 4.185 4 C -0.005 4.005 5 N -0.360 5.360 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.127 4.127 9 C -0.037 4.037 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.236 4.236 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.054 4.054 25 C 0.040 3.960 26 H 0.096 0.904 27 O -0.359 6.359 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.984 19.116 19.311 28.320 hybrid contribution 0.775 -0.479 0.536 1.058 sum -7.208 18.637 19.847 28.164 Atomic orbital electron populations 1.21739 0.92587 1.02573 1.02462 1.21844 0.95825 0.96020 0.93503 1.21548 1.01976 0.93276 1.01693 1.22333 1.01263 0.79914 0.96962 1.48444 1.75050 1.06320 1.06161 1.20464 0.75937 0.85424 0.86381 1.90778 1.47989 1.85722 1.14392 1.20560 1.04277 0.90073 0.97830 1.18665 0.93165 0.95775 0.96091 1.20405 0.95850 1.02957 1.01434 1.20735 0.97273 0.95982 0.95426 1.21299 0.91908 1.05781 1.04656 1.18995 0.86303 0.91473 0.92352 1.83566 1.27924 1.57783 1.43223 1.20767 0.96823 1.24505 1.04245 0.87651 1.24452 0.99255 0.95609 0.94685 1.69647 1.31194 1.32339 1.18837 0.86191 0.82050 0.80320 0.78419 1.19917 1.20833 1.18360 1.19933 0.97564 1.01215 1.00566 1.22823 1.02414 0.98354 0.81759 1.22838 0.84260 0.91811 0.97116 0.90397 1.86535 1.26490 1.61594 1.61291 0.92045 0.91535 0.92116 0.91328 0.92483 0.92293 0.91105 0.90312 0.88495 0.88471 0.87782 0.87151 0.84962 0.91127 0.86889 0.90572 0.90767 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.59 37.16 0.32 -0.55 16 2 C -0.07 -0.53 0.89 -152.24 -0.14 -0.66 16 3 C -0.13 -0.89 8.26 37.16 0.31 -0.58 16 4 C 0.12 1.26 5.84 -2.42 -0.01 1.25 16 5 N -0.62 -7.02 3.31 -170.38 -0.56 -7.59 16 6 C 0.53 7.95 7.84 -10.99 -0.09 7.86 16 7 O -0.52 -10.36 16.29 5.56 0.09 -10.27 16 8 C -0.09 -1.16 5.02 -29.04 -0.15 -1.30 16 9 C -0.04 -0.66 4.37 -104.65 -0.46 -1.11 16 10 C -0.19 -3.35 9.70 -39.53 -0.38 -3.74 16 11 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 12 C -0.22 -4.95 9.17 -39.39 -0.36 -5.32 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.22 -6.05 8.59 0.05 0.00 -6.05 16 15 C -0.39 -11.31 9.95 30.88 0.31 -11.01 16 16 H 0.11 3.13 5.43 -52.49 -0.29 2.85 16 17 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 18 N -0.88 -26.14 13.96 55.48 0.77 -25.36 16 19 Si 0.90 22.37 28.62 -169.99 -4.86 17.51 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.17 -3.68 9.65 -39.39 -0.38 -4.06 16 24 C 0.07 0.50 5.93 -3.06 -0.02 0.48 16 25 C 0.10 0.61 3.58 -24.89 -0.09 0.52 16 26 H 0.08 0.33 8.04 -51.93 -0.42 -0.09 16 27 O -0.55 -3.64 12.13 -35.23 -0.43 -4.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 7.91 -51.93 -0.41 0.02 16 31 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 35 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 36 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.13 3.13 5.64 -52.48 -0.30 2.83 16 41 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 45 H 0.38 1.00 9.09 45.56 0.41 1.42 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -35.45 372.10 -7.26 -42.71 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.99 Total: 2.23 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.89 Total: -14.71 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.21 Total: -32.95 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.34 Total: -20.39 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.86 Total: 17.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.45 -7.26 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279375696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.030 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds