Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.91552 * 2 1 4 4 C 1.55125 * 111.19260 * 236.08340 * 2 1 3 5 5 N 1.47419 * 104.72573 * 279.19429 * 4 2 1 6 6 C 1.34781 * 125.65115 * 155.82225 * 5 4 2 7 7 O 1.21283 * 119.99582 * 359.71021 * 6 5 4 8 8 C 1.50696 * 120.00170 * 179.71674 * 6 5 4 9 9 C 1.50694 * 109.47339 * 179.97438 * 8 6 5 10 10 C 1.38323 * 119.96665 * 269.98066 * 9 8 6 11 11 C 1.38281 * 120.14264 * 180.02562 * 10 9 8 12 12 C 1.38130 * 120.06140 * 359.67807 * 11 10 9 13 13 C 1.38851 * 119.93412 * 0.61576 * 12 11 10 14 14 O 1.35745 * 120.07188 * 179.68000 * 13 12 11 15 15 C 1.34834 * 117.00055 * 5.24003 * 14 13 12 16 16 H 1.07999 * 119.99602 * 354.92171 * 15 14 13 17 17 C 1.38648 * 120.00406 * 174.64923 * 15 14 13 18 18 N 1.31554 * 120.00281 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99896 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47171 * 89.99999 * 19 17 15 21 21 H 1.48496 * 109.47194 * 210.00558 * 19 17 15 22 22 H 1.48507 * 109.46803 * 330.00230 * 19 17 15 23 23 C 1.38079 * 119.96666 * 89.99348 * 9 8 6 24 24 C 1.47026 * 108.70199 * 335.55024 * 5 4 2 25 25 C 1.54325 * 107.27173 * 1.28972 * 24 5 4 26 26 H 1.08996 * 110.71749 * 140.54894 * 25 24 5 27 27 O 1.42893 * 110.72203 * 263.82827 * 25 24 5 28 28 H 1.08995 * 109.47658 * 296.10023 * 1 2 3 29 29 H 1.09003 * 109.46955 * 56.10214 * 1 2 3 30 30 H 1.09003 * 109.47230 * 176.10091 * 1 2 3 31 31 H 1.08995 * 109.47041 * 183.90420 * 3 2 1 32 32 H 1.08998 * 109.46702 * 303.90249 * 3 2 1 33 33 H 1.08998 * 109.47209 * 63.89470 * 3 2 1 34 34 H 1.09003 * 110.49239 * 160.34945 * 4 2 1 35 35 H 1.09002 * 110.34215 * 37.95858 * 4 2 1 36 36 H 1.09000 * 109.47387 * 59.99241 * 8 6 5 37 37 H 1.09007 * 109.47051 * 299.99609 * 8 6 5 38 38 H 1.08003 * 119.93024 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.96915 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.02710 * 180.29635 * 12 11 10 41 41 H 0.97000 * 120.00031 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.03298 * 359.97438 * 23 9 8 43 43 H 1.09004 * 109.87631 * 120.70422 * 24 5 4 44 44 H 1.08997 * 109.88720 * 241.87106 * 24 5 4 45 45 H 0.96707 * 113.99599 * 298.55043 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8070 -1.2002 5 7 2.0138 -2.2159 -0.7732 6 6 1.9471 -3.2830 -1.5938 7 8 1.9420 -3.1239 -2.7962 8 6 1.8788 -4.6737 -1.0175 9 6 1.8114 -5.6791 -2.1380 10 6 0.5840 -6.0758 -2.6374 11 6 0.5179 -6.9986 -3.6652 12 6 1.6785 -7.5221 -4.2008 13 6 2.9120 -7.1306 -3.6975 14 8 4.0541 -7.6482 -4.2173 15 6 3.9278 -8.4538 -5.2912 16 1 2.9460 -8.7269 -5.6487 17 6 5.0582 -8.9270 -5.9397 18 7 4.9349 -9.7126 -6.9877 19 14 6.7564 -8.4479 -5.3262 20 1 7.2191 -9.4412 -4.3240 21 1 7.7051 -8.4180 -6.4682 22 1 6.6947 -7.1033 -4.6986 23 6 2.9749 -6.2037 -2.6649 24 6 2.0285 -2.2646 0.6962 25 6 2.0861 -0.8079 1.2024 26 1 1.4522 -0.6791 2.0797 27 8 3.4326 -0.4251 1.4891 28 1 -0.3634 0.4521 0.9228 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0699 31 1 3.1636 1.4025 -0.0700 32 1 1.6704 1.9731 -0.8530 33 1 1.7835 1.9300 0.9228 34 1 3.1253 -0.5267 -1.3986 35 1 1.4764 -0.6450 -2.0859 36 1 0.9897 -4.7652 -0.3937 37 1 2.7669 -4.8609 -0.4138 38 1 -0.3247 -5.6646 -2.2233 39 1 -0.4419 -7.3066 -4.0528 40 1 1.6264 -8.2392 -5.0067 41 1 5.7258 -10.0433 -7.4416 42 1 3.9330 -5.8934 -2.2746 43 1 1.1217 -2.7479 1.0600 44 1 2.9063 -2.8116 1.0403 45 1 3.8526 -0.9534 2.1818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279375696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -110.338556 kcal Electronic energy + Delta-G solvation = -26580.899935 eV Core-core repulsion = 22756.051003 eV Total energy + Delta-G solvation = -3824.848932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55679 -40.85477 -39.57048 -38.23192 -36.32856 -34.74875 -34.49198 -33.43486 -31.12242 -29.86548 -29.16366 -28.06596 -27.33148 -26.66814 -23.98773 -23.35993 -22.48938 -20.55951 -20.17253 -19.63175 -18.83191 -18.31366 -17.96013 -17.03850 -16.89006 -16.46090 -16.30592 -15.85314 -15.74248 -15.64477 -15.35799 -15.10103 -14.84240 -14.44994 -14.36274 -14.15818 -13.94900 -13.69930 -13.55381 -13.23672 -13.05405 -12.99089 -12.93899 -12.73539 -12.59073 -12.42927 -12.37670 -12.05793 -11.95248 -11.89929 -11.34884 -11.28686 -11.17627 -10.93599 -10.79086 -9.70094 -9.68004 -9.08817 -8.52106 -6.24979 0.45155 0.67505 1.27510 1.32874 1.48765 1.61560 1.96733 2.25953 2.74899 2.97549 3.11722 3.16228 3.39547 3.57863 3.72258 3.88637 3.98712 4.04716 4.17138 4.25316 4.30967 4.37923 4.48180 4.51915 4.56787 4.60168 4.66811 4.69286 4.77569 4.81258 4.86196 4.93983 4.98495 5.05227 5.16919 5.20953 5.26470 5.32197 5.37024 5.50101 5.62268 5.69785 5.74505 5.89371 6.22117 6.47638 6.82169 6.94999 7.16171 7.56901 8.59795 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.002753 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.995342 B =10167.725798 C =10914.067114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.124 4.124 4 C 0.111 3.889 5 N -0.616 5.616 6 C 0.524 3.476 7 O -0.583 6.583 8 C -0.081 4.081 9 C -0.030 4.030 10 C -0.170 4.170 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.119 3.881 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.260 1.260 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.182 4.182 24 C 0.060 3.940 25 C 0.106 3.894 26 H 0.110 0.890 27 O -0.573 6.573 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 20.742 24.994 33.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.012 4.012 5 N -0.350 5.350 6 C 0.314 3.686 7 O -0.462 6.462 8 C -0.120 4.120 9 C -0.030 4.030 10 C -0.188 4.188 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.070 3.930 14 O -0.155 6.155 15 C -0.477 4.477 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.201 4.201 24 C -0.062 4.062 25 C 0.047 3.953 26 H 0.128 0.872 27 O -0.382 6.382 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.305 21.090 23.764 33.107 hybrid contribution 0.932 -0.878 -0.641 1.432 sum -8.373 20.212 23.124 31.833 Atomic orbital electron populations 1.21718 0.91453 1.02424 1.03392 1.21845 0.96608 0.95729 0.92582 1.21512 1.00898 0.93315 1.02445 1.22387 1.00090 0.80576 0.98125 1.48461 1.72800 1.05608 1.08101 1.20734 0.75333 0.86710 0.85783 1.90763 1.51550 1.86726 1.17191 1.20652 1.07793 0.87227 0.96365 1.19219 0.91985 0.95358 0.96484 1.21005 0.97573 1.00688 0.99537 1.21125 0.97203 0.95675 0.95482 1.21336 0.93150 1.06472 1.04962 1.19573 0.86156 0.93265 0.93978 1.83504 1.29493 1.59099 1.43409 1.20726 0.96253 1.25367 1.05313 0.90213 1.25280 1.03032 0.95637 0.94898 1.69727 1.32536 1.33939 1.20245 0.85222 0.77493 0.79515 0.78489 1.18446 1.19064 1.19360 1.20252 0.99422 1.00574 0.99844 1.23241 1.04593 0.99707 0.78639 1.22884 0.84599 0.90505 0.97355 0.87204 1.86509 1.26966 1.62368 1.62309 0.89776 0.92231 0.92531 0.92916 0.92565 0.90794 0.92917 0.92460 0.83921 0.85893 0.83349 0.84004 0.87385 0.90532 0.86321 0.87654 0.89252 0.75146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.59 71.98 0.62 -0.65 16 2 C -0.07 -0.82 0.89 -50.71 -0.05 -0.86 16 3 C -0.12 -1.50 8.26 71.98 0.59 -0.91 16 4 C 0.11 2.29 5.84 86.93 0.51 2.80 16 5 N -0.62 -12.26 3.31 -811.35 -2.69 -14.95 16 6 C 0.52 14.52 7.84 87.65 0.69 15.21 16 7 O -0.58 -23.34 16.29 -3.04 -0.05 -23.39 16 8 C -0.08 -1.79 5.02 29.10 0.15 -1.64 16 9 C -0.03 -1.00 4.37 -19.88 -0.09 -1.09 16 10 C -0.17 -5.49 9.70 22.30 0.22 -5.28 16 11 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 12 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 13 C 0.12 6.05 6.65 22.58 0.15 6.20 16 14 O -0.25 -14.35 8.59 -22.73 -0.20 -14.55 16 15 C -0.40 -24.88 9.95 67.92 0.68 -24.20 16 16 H 0.08 5.18 5.43 -2.91 -0.02 5.17 16 17 C 0.01 0.59 5.49 84.83 0.47 1.05 16 18 N -0.92 -57.15 13.96 21.61 0.30 -56.85 16 19 Si 0.97 47.58 28.62 68.60 1.96 49.54 16 20 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 23 C -0.18 -7.68 9.65 22.39 0.22 -7.47 16 24 C 0.06 0.56 5.93 86.73 0.51 1.08 16 25 C 0.11 0.85 3.58 31.79 0.11 0.96 16 26 H 0.11 0.28 8.04 -2.39 -0.02 0.26 16 27 O -0.57 -5.64 12.13 -148.98 -1.81 -7.44 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.60 7.91 -2.39 -0.02 0.58 16 31 H 0.05 0.81 7.45 -2.39 -0.02 0.79 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.06 1.41 7.95 -2.39 -0.02 1.39 16 36 H 0.14 1.89 8.08 -2.39 -0.02 1.88 16 37 H 0.12 2.15 8.09 -2.38 -0.02 2.13 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.11 5.57 5.64 -2.91 -0.02 5.56 16 41 H 0.29 16.12 8.31 -92.71 -0.77 15.35 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.11 0.46 8.14 -2.38 -0.02 0.45 16 44 H 0.09 0.64 8.05 -2.39 -0.02 0.62 16 45 H 0.40 0.61 9.09 -74.05 -0.67 -0.07 16 Total: -1.00 -84.53 372.10 3.06 -81.47 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.33 Total: 14.82 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 5.20 Total: -28.66 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.38 Total: -71.79 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.05 Total: -45.39 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.96 Total: 49.54 kcal Total: -84.53 3.06 -81.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279375696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.868 kcal (2) G-P(sol) polarization free energy of solvation -84.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds