Wall clock time and date at job start Tue Mar 31 2020 13:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 109.47029 * 2 1
4 4 C 1.53004 * 109.46927 * 151.82829 * 3 2 1
5 5 C 1.53003 * 109.46727 * 184.99729 * 4 3 2
6 6 C 1.52997 * 109.46997 * 271.83083 * 3 2 1
7 7 N 1.46499 * 109.47298 * 59.77968 * 6 3 2
8 8 C 1.46503 * 119.99806 * 273.64482 * 7 6 3
9 9 C 1.50702 * 109.46952 * 291.30163 * 8 7 6
10 10 H 1.07997 * 120.00207 * 0.02562 * 9 8 7
11 11 C 1.37879 * 119.99883 * 180.02562 * 9 8 7
12 12 N 1.31511 * 120.00030 * 179.97438 * 11 9 8
13 13 Si 1.86804 * 119.99815 * 359.97438 * 11 9 8
14 14 H 1.48500 * 109.47311 * 90.00065 * 13 11 9
15 15 H 1.48504 * 109.46866 * 210.00236 * 13 11 9
16 16 H 1.48498 * 109.47012 * 330.00028 * 13 11 9
17 17 S 1.65597 * 119.99899 * 93.64106 * 7 6 3
18 18 O 1.42098 * 104.27639 * 143.85036 * 17 7 6
19 19 O 1.42097 * 104.27672 * 15.99375 * 17 7 6
20 20 C 1.81396 * 104.44996 * 259.92361 * 17 7 6
21 21 H 1.09003 * 110.45613 * 323.89302 * 20 17 7
22 22 C 1.54513 * 110.51301 * 201.29331 * 20 17 7
23 23 C 1.54480 * 104.05968 * 241.21894 * 22 20 17
24 24 O 1.44425 * 104.80422 * 336.01708 * 23 22 20
25 25 C 1.44423 * 105.27431 * 40.51087 * 24 23 22
26 26 H 1.08997 * 109.47134 * 65.65913 * 1 2 3
27 27 H 1.09002 * 109.47045 * 185.65996 * 1 2 3
28 28 H 1.09004 * 109.47244 * 305.65887 * 1 2 3
29 29 H 1.08995 * 109.47287 * 239.99714 * 2 1 3
30 30 H 1.09006 * 109.46958 * 119.99492 * 2 1 3
31 31 H 1.08996 * 109.47035 * 31.83563 * 3 2 1
32 32 H 1.08994 * 109.47272 * 304.99863 * 4 3 2
33 33 H 1.09006 * 109.46990 * 65.00238 * 4 3 2
34 34 H 1.08994 * 109.47354 * 300.00083 * 5 4 3
35 35 H 1.08997 * 109.46787 * 60.00590 * 5 4 3
36 36 H 1.09005 * 109.46758 * 180.02562 * 5 4 3
37 37 H 1.09009 * 109.47067 * 299.77945 * 6 3 2
38 38 H 1.08997 * 109.47383 * 179.78336 * 6 3 2
39 39 H 1.08999 * 109.47098 * 51.30551 * 8 7 6
40 40 H 1.09003 * 109.46888 * 171.30490 * 8 7 6
41 41 H 0.96997 * 119.99940 * 179.97438 * 12 11 9
42 42 H 1.09001 * 110.50988 * 359.85673 * 22 20 17
43 43 H 1.08998 * 110.51595 * 122.56981 * 22 20 17
44 44 H 1.08995 * 110.37786 * 94.85177 * 23 22 20
45 45 H 1.09001 * 110.36792 * 217.18562 * 23 22 20
46 46 H 1.08998 * 110.36973 * 200.65136 * 25 24 23
47 47 H 1.09009 * 110.36443 * 78.32537 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.4089 1.4995 0.6811
5 6 3.8627 2.9564 0.7927
6 6 2.1665 1.9387 -1.4417
7 7 0.8568 1.8792 -2.0954
8 6 0.4151 0.6395 -2.7392
9 6 1.2565 0.3815 -3.9626
10 1 2.0419 1.0715 -4.2332
11 6 1.0235 -0.7357 -4.7363
12 7 1.7574 -0.9607 -5.8042
13 14 -0.3346 -1.9297 -4.2678
14 1 -1.6029 -1.5180 -4.9214
15 1 0.0322 -3.2971 -4.7161
16 1 -0.5126 -1.9231 -2.7936
17 16 -0.1244 3.2131 -2.1065
18 8 -0.7622 3.1685 -3.3755
19 8 0.7392 4.2863 -1.7580
20 6 -1.3231 2.9044 -0.7805
21 1 -1.5757 1.8450 -0.7344
22 6 -2.5953 3.7555 -0.9916
23 6 -2.6589 4.6530 0.2641
24 8 -1.9129 3.9338 1.2701
25 6 -0.7688 3.3882 0.5778
26 1 -0.3633 0.4236 -0.9363
27 1 -0.3633 -1.0227 0.1014
28 1 -0.3634 0.5991 0.8350
29 1 1.8933 -0.5138 -0.8899
30 1 1.8933 -0.5138 0.8901
31 1 1.3379 2.0761 0.5421
32 1 3.3373 1.0638 1.6776
33 1 4.1324 0.9378 0.0900
34 1 3.9342 3.3920 -0.2039
35 1 3.1392 3.5179 1.3837
36 1 4.8381 2.9969 1.2775
37 1 2.8716 1.3074 -1.9827
38 1 2.5261 2.9676 -1.4417
39 1 0.5238 -0.1909 -2.0416
40 1 -0.6309 0.7344 -3.0310
41 1 1.5938 -1.7468 -6.3483
42 1 -2.5029 4.3637 -1.8914
43 1 -3.4767 3.1170 -1.0498
44 1 -2.1938 5.6184 0.0646
45 1 -3.6928 4.7876 0.5822
46 1 -0.3506 2.5513 1.1370
47 1 -0.0137 4.1597 0.4264
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000345159122.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:15:48
Heat of formation + Delta-G solvation = -109.062498 kcal
Electronic energy + Delta-G solvation = -28257.412359 eV
Core-core repulsion = 24568.062713 eV
Total energy + Delta-G solvation = -3689.349647 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-39.42027 -38.27376 -36.79716 -35.56104 -34.42373 -32.57236 -32.32569 -31.78253
-29.45779 -28.86900 -26.62805 -24.25886 -23.37609 -22.13265 -21.98096 -21.60881
-20.04297 -18.44516 -17.53296 -17.18168 -16.68234 -16.41876 -15.98927 -15.31103
-15.17454 -14.73316 -14.38094 -14.21170 -13.92855 -13.68271 -13.48829 -13.01059
-12.84219 -12.63598 -12.47084 -12.19471 -12.05110 -11.99588 -11.85416 -11.74819
-11.54312 -11.47470 -11.42379 -11.30495 -11.12975 -11.09754 -10.73478 -10.62543
-10.50575 -10.35043 -10.08016 -10.06679 -9.98415 -9.87753 -9.45011 -8.63407
-8.06468 -6.12352 -4.10843 0.55043 3.07162 3.22739 3.26746 3.31478
3.65163 4.02102 4.09175 4.33509 4.38604 4.70148 4.87409 4.89689
4.94019 5.02820 5.05318 5.15268 5.19487 5.31501 5.38243 5.45331
5.46825 5.56840 5.59361 5.60791 5.65676 5.69911 5.78017 5.85168
5.99503 6.09184 6.16681 6.23261 6.30420 6.40135 6.46588 6.46722
6.53911 6.54373 6.64841 6.84048 7.00869 7.29571 7.56825 8.46009
8.93979 9.46699 11.01003
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.011980 B = 0.006606 C = 0.005422
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2336.634286 B = 4237.760475 C = 5162.581853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.118 4.118
3 C -0.114 4.114
4 C -0.115 4.115
5 C -0.158 4.158
6 C 0.124 3.876
7 N -0.970 5.970
8 C 0.205 3.795
9 C -0.525 4.525
10 H 0.080 0.920
11 C 0.074 3.926
12 N -0.894 5.894
13 Si 0.864 3.136
14 H -0.273 1.273
15 H -0.283 1.283
16 H -0.262 1.262
17 S 2.606 3.394
18 O -0.937 6.937
19 O -0.961 6.961
20 C -0.656 4.656
21 H 0.150 0.850
22 C -0.128 4.128
23 C 0.043 3.957
24 O -0.365 6.365
25 C 0.069 3.931
26 H 0.077 0.923
27 H 0.051 0.949
28 H 0.047 0.953
29 H 0.081 0.919
30 H 0.055 0.945
31 H 0.064 0.936
32 H 0.060 0.940
33 H 0.067 0.933
34 H 0.062 0.938
35 H 0.052 0.948
36 H 0.050 0.950
37 H 0.096 0.904
38 H 0.084 0.916
39 H 0.054 0.946
40 H 0.028 0.972
41 H 0.265 0.735
42 H 0.081 0.919
43 H 0.095 0.905
44 H 0.066 0.934
45 H 0.099 0.901
46 H 0.108 0.892
47 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.093 6.307 15.296 17.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.156 4.156
3 C -0.134 4.134
4 C -0.153 4.153
5 C -0.215 4.215
6 C -0.002 4.002
7 N -0.808 5.808
8 C 0.082 3.918
9 C -0.564 4.564
10 H 0.099 0.901
11 C -0.129 4.129
12 N -0.532 5.532
13 Si 0.690 3.310
14 H -0.199 1.199
15 H -0.209 1.209
16 H -0.187 1.187
17 S 2.696 3.304
18 O -0.927 6.927
19 O -0.952 6.952
20 C -0.762 4.762
21 H 0.168 0.832
22 C -0.167 4.167
23 C -0.035 4.035
24 O -0.283 6.283
25 C -0.008 4.008
26 H 0.095 0.905
27 H 0.070 0.930
28 H 0.066 0.934
29 H 0.099 0.901
30 H 0.073 0.927
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.085 0.915
34 H 0.081 0.919
35 H 0.071 0.929
36 H 0.069 0.931
37 H 0.114 0.886
38 H 0.102 0.898
39 H 0.072 0.928
40 H 0.045 0.955
41 H 0.075 0.925
42 H 0.100 0.900
43 H 0.114 0.886
44 H 0.084 0.916
45 H 0.117 0.883
46 H 0.126 0.874
47 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.076 6.876 14.798 16.818
hybrid contribution -1.051 -1.308 0.241 1.695
sum -5.127 5.568 15.039 16.836
Atomic orbital electron populations
1.22526 0.96905 1.01686 1.02435 1.21625 0.95510 0.96044 1.02392
1.21869 0.97031 0.97342 0.97156 1.21532 0.96512 0.97062 1.00172
1.21869 1.00583 0.96703 1.02358 1.21456 0.85153 1.02711 0.90839
1.57103 1.26788 1.29112 1.67806 1.19951 0.95311 0.82435 0.94084
1.21279 1.18315 1.09018 1.07772 0.90147 1.24847 0.95843 0.97515
0.94671 1.69880 1.39643 1.28069 1.15653 0.87048 0.83214 0.81145
0.79586 1.19874 1.20907 1.18680 1.05207 0.75175 0.74188 0.75828
1.93637 1.77833 1.86047 1.35171 1.93514 1.62820 1.53326 1.85491
1.32393 1.14696 1.11126 1.17971 0.83239 1.22684 0.96530 0.97837
0.99601 1.23498 0.97822 0.94933 0.87200 1.89101 1.37210 1.70071
1.31967 1.23300 0.89472 0.99070 0.88945 0.90461 0.92977 0.93441
0.90054 0.92653 0.91808 0.92172 0.91450 0.91918 0.92896 0.93108
0.88565 0.89759 0.92812 0.95455 0.92521 0.90002 0.88637 0.91555
0.88286 0.87444 0.89958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.45 7.76 37.16 0.29 -2.16 16
2 C -0.12 -1.62 5.04 -26.73 -0.13 -1.76 16
3 C -0.11 -1.50 2.19 -90.62 -0.20 -1.70 16
4 C -0.11 -1.30 5.30 -26.73 -0.14 -1.44 16
5 C -0.16 -1.73 9.67 37.16 0.36 -1.37 16
6 C 0.12 2.04 4.67 -4.04 -0.02 2.02 16
7 N -0.97 -18.18 1.94 -115.66 -0.22 -18.40 16
8 C 0.20 4.45 2.23 -5.19 -0.01 4.44 16
9 C -0.52 -14.11 9.31 -34.44 -0.32 -14.43 16
10 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16
11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16
12 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16
13 Si 0.86 20.24 27.47 -169.99 -4.67 15.58 16
14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
16 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16
17 S 2.61 46.76 4.98 -107.50 -0.53 46.23 16
18 O -0.94 -20.63 16.70 -57.54 -0.96 -21.59 16
19 O -0.96 -17.84 15.00 -57.54 -0.86 -18.71 16
20 C -0.66 -8.95 3.49 -25.16 -0.09 -9.04 16
21 H 0.15 1.91 5.81 -51.93 -0.30 1.61 16
22 C -0.13 -1.51 6.70 -25.16 -0.17 -1.68 16
23 C 0.04 0.46 7.63 37.93 0.29 0.74 16
24 O -0.37 -4.73 11.65 -35.23 -0.41 -5.14 16
25 C 0.07 0.88 6.26 37.93 0.24 1.11 16
26 H 0.08 1.17 2.22 -51.93 -0.12 1.06 16
27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.05 0.55 6.37 -51.93 -0.33 0.22 16
29 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16
30 H 0.05 0.66 7.77 -51.93 -0.40 0.26 16
31 H 0.06 0.77 5.04 -51.93 -0.26 0.51 16
32 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16
33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
34 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16
35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
37 H 0.10 1.71 7.62 -51.92 -0.40 1.32 16
38 H 0.08 1.35 5.21 -51.93 -0.27 1.08 16
39 H 0.05 1.09 2.84 -51.93 -0.15 0.94 16
40 H 0.03 0.61 6.82 -51.93 -0.35 0.25 16
41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
42 H 0.08 0.95 7.41 -51.93 -0.38 0.57 16
43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
45 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16
46 H 0.11 1.21 5.00 -51.93 -0.26 0.95 16
47 H 0.08 1.04 6.78 -51.92 -0.35 0.69 16
LS Contribution 351.53 15.07 5.30 5.30
Total: -1.00 -32.54 351.53 -8.82 -41.36
By element:
Atomic # 1 Polarization: 11.78 SS G_CDS: -7.22 Total: 4.56 kcal
Atomic # 6 Polarization: -23.30 SS G_CDS: 0.00 Total: -23.30 kcal
Atomic # 7 Polarization: -44.83 SS G_CDS: 0.55 Total: -44.28 kcal
Atomic # 8 Polarization: -43.20 SS G_CDS: -2.23 Total: -45.43 kcal
Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.58 kcal
Atomic # 16 Polarization: 46.76 SS G_CDS: -0.53 Total: 46.23 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -32.54 -8.82 -41.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345159122.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.705 kcal
(2) G-P(sol) polarization free energy of solvation -32.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds