Wall clock time and date at job start Tue Mar 31 2020 13:15:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 109.47029 * 2 1
4 4 C 1.53004 * 109.46927 * 151.82829 * 3 2 1
5 5 C 1.53003 * 109.46727 * 184.99729 * 4 3 2
6 6 C 1.52997 * 109.46997 * 271.83083 * 3 2 1
7 7 N 1.46499 * 109.47298 * 59.77968 * 6 3 2
8 8 C 1.46503 * 119.99806 * 273.64482 * 7 6 3
9 9 C 1.50702 * 109.46952 * 291.30163 * 8 7 6
10 10 H 1.07997 * 120.00207 * 0.02562 * 9 8 7
11 11 C 1.37879 * 119.99883 * 180.02562 * 9 8 7
12 12 N 1.31511 * 120.00030 * 179.97438 * 11 9 8
13 13 Si 1.86804 * 119.99815 * 359.97438 * 11 9 8
14 14 H 1.48500 * 109.47311 * 90.00065 * 13 11 9
15 15 H 1.48504 * 109.46866 * 210.00236 * 13 11 9
16 16 H 1.48498 * 109.47012 * 330.00028 * 13 11 9
17 17 S 1.65597 * 119.99899 * 93.64106 * 7 6 3
18 18 O 1.42098 * 104.27639 * 143.85036 * 17 7 6
19 19 O 1.42097 * 104.27672 * 15.99375 * 17 7 6
20 20 C 1.81396 * 104.44996 * 259.92361 * 17 7 6
21 21 H 1.09003 * 110.45613 * 323.89302 * 20 17 7
22 22 C 1.54513 * 110.51301 * 201.29331 * 20 17 7
23 23 C 1.54480 * 104.05968 * 241.21894 * 22 20 17
24 24 O 1.44425 * 104.80422 * 336.01708 * 23 22 20
25 25 C 1.44423 * 105.27431 * 40.51087 * 24 23 22
26 26 H 1.08997 * 109.47134 * 65.65913 * 1 2 3
27 27 H 1.09002 * 109.47045 * 185.65996 * 1 2 3
28 28 H 1.09004 * 109.47244 * 305.65887 * 1 2 3
29 29 H 1.08995 * 109.47287 * 239.99714 * 2 1 3
30 30 H 1.09006 * 109.46958 * 119.99492 * 2 1 3
31 31 H 1.08996 * 109.47035 * 31.83563 * 3 2 1
32 32 H 1.08994 * 109.47272 * 304.99863 * 4 3 2
33 33 H 1.09006 * 109.46990 * 65.00238 * 4 3 2
34 34 H 1.08994 * 109.47354 * 300.00083 * 5 4 3
35 35 H 1.08997 * 109.46787 * 60.00590 * 5 4 3
36 36 H 1.09005 * 109.46758 * 180.02562 * 5 4 3
37 37 H 1.09009 * 109.47067 * 299.77945 * 6 3 2
38 38 H 1.08997 * 109.47383 * 179.78336 * 6 3 2
39 39 H 1.08999 * 109.47098 * 51.30551 * 8 7 6
40 40 H 1.09003 * 109.46888 * 171.30490 * 8 7 6
41 41 H 0.96997 * 119.99940 * 179.97438 * 12 11 9
42 42 H 1.09001 * 110.50988 * 359.85673 * 22 20 17
43 43 H 1.08998 * 110.51595 * 122.56981 * 22 20 17
44 44 H 1.08995 * 110.37786 * 94.85177 * 23 22 20
45 45 H 1.09001 * 110.36792 * 217.18562 * 23 22 20
46 46 H 1.08998 * 110.36973 * 200.65136 * 25 24 23
47 47 H 1.09009 * 110.36443 * 78.32537 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.4089 1.4995 0.6811
5 6 3.8627 2.9564 0.7927
6 6 2.1665 1.9387 -1.4417
7 7 0.8568 1.8792 -2.0954
8 6 0.4151 0.6395 -2.7392
9 6 1.2565 0.3815 -3.9626
10 1 2.0419 1.0715 -4.2332
11 6 1.0235 -0.7357 -4.7363
12 7 1.7574 -0.9607 -5.8042
13 14 -0.3346 -1.9297 -4.2678
14 1 -1.6029 -1.5180 -4.9214
15 1 0.0322 -3.2971 -4.7161
16 1 -0.5126 -1.9231 -2.7936
17 16 -0.1244 3.2131 -2.1065
18 8 -0.7622 3.1685 -3.3755
19 8 0.7392 4.2863 -1.7580
20 6 -1.3231 2.9044 -0.7805
21 1 -1.5757 1.8450 -0.7344
22 6 -2.5953 3.7555 -0.9916
23 6 -2.6589 4.6530 0.2641
24 8 -1.9129 3.9338 1.2701
25 6 -0.7688 3.3882 0.5778
26 1 -0.3633 0.4236 -0.9363
27 1 -0.3633 -1.0227 0.1014
28 1 -0.3634 0.5991 0.8350
29 1 1.8933 -0.5138 -0.8899
30 1 1.8933 -0.5138 0.8901
31 1 1.3379 2.0761 0.5421
32 1 3.3373 1.0638 1.6776
33 1 4.1324 0.9378 0.0900
34 1 3.9342 3.3920 -0.2039
35 1 3.1392 3.5179 1.3837
36 1 4.8381 2.9969 1.2775
37 1 2.8716 1.3074 -1.9827
38 1 2.5261 2.9676 -1.4417
39 1 0.5238 -0.1909 -2.0416
40 1 -0.6309 0.7344 -3.0310
41 1 1.5938 -1.7468 -6.3483
42 1 -2.5029 4.3637 -1.8914
43 1 -3.4767 3.1170 -1.0498
44 1 -2.1938 5.6184 0.0646
45 1 -3.6928 4.7876 0.5822
46 1 -0.3506 2.5513 1.1370
47 1 -0.0137 4.1597 0.4264
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345159122.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:15:47
Heat of formation + Delta-G solvation = -132.509792 kcal
Electronic energy + Delta-G solvation = -28258.429110 eV
Core-core repulsion = 24568.062713 eV
Total energy + Delta-G solvation = -3690.366398 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.38448 -39.51347 -38.31900 -37.08554 -35.85161 -34.28525 -33.59376 -32.82155
-30.43915 -30.37404 -28.10590 -25.49972 -24.33155 -23.83166 -23.05343 -22.65092
-21.14044 -19.83866 -19.10817 -18.86808 -17.94222 -17.50402 -17.42271 -16.60471
-16.37733 -15.88561 -15.84231 -15.66493 -15.04065 -14.83140 -14.65559 -14.41244
-14.04113 -13.91813 -13.79462 -13.54647 -13.35543 -13.27955 -13.14639 -13.05500
-13.00129 -12.76667 -12.66118 -12.48465 -12.37687 -12.24553 -12.21697 -11.99420
-11.74320 -11.72660 -11.42511 -11.28389 -11.16182 -11.03618 -10.90871 -10.74314
-9.59330 -8.26845 -6.30482 -0.85018 1.35094 1.38609 1.46242 1.66001
2.35347 2.65077 2.76824 2.99799 3.07481 3.24293 3.65545 3.77015
3.82004 3.96822 3.99108 4.09780 4.11746 4.15526 4.39703 4.50072
4.52990 4.57672 4.62265 4.64437 4.72658 4.74597 4.76154 4.84876
4.86450 4.94472 5.06711 5.14053 5.16670 5.25402 5.32661 5.40201
5.42137 5.47248 5.53256 5.56358 5.57960 5.68792 5.83667 6.34907
6.72921 7.31056 8.90561
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.011980 B = 0.006606 C = 0.005422
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2336.634286 B = 4237.760475 C = 5162.581853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.119 4.119
3 C -0.106 4.106
4 C -0.112 4.112
5 C -0.159 4.159
6 C 0.122 3.878
7 N -0.979 5.979
8 C 0.216 3.784
9 C -0.531 4.531
10 H 0.030 0.970
11 C 0.008 3.992
12 N -0.949 5.949
13 Si 0.929 3.071
14 H -0.272 1.272
15 H -0.281 1.281
16 H -0.221 1.221
17 S 2.599 3.401
18 O -0.990 6.990
19 O -0.977 6.977
20 C -0.628 4.628
21 H 0.168 0.832
22 C -0.138 4.138
23 C 0.038 3.962
24 O -0.372 6.372
25 C 0.068 3.932
26 H 0.058 0.942
27 H 0.059 0.941
28 H 0.073 0.927
29 H 0.051 0.949
30 H 0.080 0.920
31 H 0.082 0.918
32 H 0.084 0.916
33 H 0.058 0.942
34 H 0.043 0.957
35 H 0.061 0.939
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.081 0.919
39 H 0.080 0.920
40 H 0.029 0.971
41 H 0.266 0.734
42 H 0.078 0.922
43 H 0.118 0.882
44 H 0.073 0.927
45 H 0.129 0.871
46 H 0.128 0.872
47 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.475 5.755 19.321 21.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.156 4.156
3 C -0.126 4.126
4 C -0.150 4.150
5 C -0.216 4.216
6 C -0.004 4.004
7 N -0.816 5.816
8 C 0.092 3.908
9 C -0.571 4.571
10 H 0.048 0.952
11 C -0.189 4.189
12 N -0.590 5.590
13 Si 0.751 3.249
14 H -0.197 1.197
15 H -0.207 1.207
16 H -0.143 1.143
17 S 2.695 3.305
18 O -0.980 6.980
19 O -0.968 6.968
20 C -0.740 4.740
21 H 0.185 0.815
22 C -0.177 4.177
23 C -0.038 4.038
24 O -0.290 6.290
25 C -0.009 4.009
26 H 0.077 0.923
27 H 0.078 0.922
28 H 0.092 0.908
29 H 0.069 0.931
30 H 0.098 0.902
31 H 0.100 0.900
32 H 0.103 0.897
33 H 0.077 0.923
34 H 0.062 0.938
35 H 0.080 0.920
36 H 0.083 0.917
37 H 0.086 0.914
38 H 0.100 0.900
39 H 0.097 0.903
40 H 0.047 0.953
41 H 0.074 0.926
42 H 0.096 0.904
43 H 0.136 0.864
44 H 0.091 0.909
45 H 0.147 0.853
46 H 0.145 0.855
47 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -6.402 6.356 18.809 20.861
hybrid contribution -0.262 -0.975 -1.016 1.433
sum -6.664 5.381 17.793 19.747
Atomic orbital electron populations
1.22545 0.96438 1.02598 1.02467 1.21616 0.96008 0.95888 1.02123
1.21820 0.98697 0.97456 0.94628 1.21540 0.95113 0.97385 1.00991
1.21880 1.01746 0.96427 1.01586 1.21530 0.83839 1.02190 0.92808
1.56985 1.28178 1.27972 1.68441 1.19758 0.94028 0.84584 0.92414
1.21635 1.17650 1.07897 1.09886 0.95198 1.25854 0.98754 0.99851
0.94467 1.70065 1.42255 1.29168 1.17512 0.85998 0.79141 0.77995
0.81811 1.19715 1.20693 1.14280 1.05116 0.75500 0.73660 0.76217
1.93573 1.78590 1.86529 1.39333 1.93486 1.63848 1.53701 1.85727
1.32067 1.13451 1.12796 1.15672 0.81472 1.22917 0.96164 0.98274
1.00314 1.23731 0.99426 0.94603 0.86077 1.89105 1.37169 1.70291
1.32449 1.23402 0.89611 0.99775 0.88152 0.92350 0.92203 0.90825
0.93061 0.90156 0.90012 0.89735 0.92295 0.93795 0.92017 0.91662
0.91413 0.90040 0.90256 0.95271 0.92552 0.90377 0.86351 0.90892
0.85333 0.85475 0.90233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.29 7.76 71.98 0.56 -3.73 16
2 C -0.12 -2.95 5.04 30.59 0.15 -2.80 16
3 C -0.11 -2.61 2.19 -10.79 -0.02 -2.63 16
4 C -0.11 -2.33 5.30 30.60 0.16 -2.16 16
5 C -0.16 -3.23 9.67 71.98 0.70 -2.54 16
6 C 0.12 4.11 4.67 86.38 0.40 4.51 16
7 N -0.98 -37.18 1.94 -519.83 -1.01 -38.19 16
8 C 0.22 9.42 2.23 85.63 0.19 9.61 16
9 C -0.53 -30.04 9.31 25.60 0.24 -29.80 16
10 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16
11 C 0.01 0.47 5.47 84.66 0.46 0.93 16
12 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16
13 Si 0.93 41.56 27.47 68.60 1.88 43.44 16
14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
16 H -0.22 -8.31 6.54 99.48 0.65 -7.65 16
17 S 2.60 93.36 4.98 -56.49 -0.28 93.08 16
18 O -0.99 -44.89 16.70 -127.65 -2.13 -47.02 16
19 O -0.98 -36.73 15.00 -127.65 -1.91 -38.65 16
20 C -0.63 -15.37 3.49 31.61 0.11 -15.26 16
21 H 0.17 3.61 5.81 -2.39 -0.01 3.60 16
22 C -0.14 -2.83 6.70 31.61 0.21 -2.62 16
23 C 0.04 0.67 7.63 72.49 0.55 1.22 16
24 O -0.37 -8.03 11.65 -148.98 -1.74 -9.77 16
25 C 0.07 1.47 6.26 72.48 0.45 1.92 16
26 H 0.06 1.58 2.22 -2.39 -0.01 1.57 16
27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
28 H 0.07 1.33 6.37 -2.38 -0.02 1.31 16
29 H 0.05 1.59 6.54 -2.39 -0.02 1.57 16
30 H 0.08 1.61 7.77 -2.38 -0.02 1.59 16
31 H 0.08 1.72 5.04 -2.39 -0.01 1.71 16
32 H 0.08 1.39 8.00 -2.39 -0.02 1.37 16
33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16
34 H 0.04 1.04 6.57 -2.39 -0.02 1.02 16
35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
36 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
37 H 0.07 2.62 7.62 -2.38 -0.02 2.60 16
38 H 0.08 2.75 5.21 -2.39 -0.01 2.73 16
39 H 0.08 3.09 2.84 -2.39 -0.01 3.09 16
40 H 0.03 1.27 6.82 -2.39 -0.02 1.26 16
41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
42 H 0.08 1.69 7.41 -2.39 -0.02 1.68 16
43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16
44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
45 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16
46 H 0.13 2.23 5.00 -2.39 -0.01 2.22 16
47 H 0.08 1.80 6.78 -2.38 -0.02 1.78 16
Total: -1.00 -75.42 351.53 0.20 -75.22
By element:
Atomic # 1 Polarization: 23.47 SS G_CDS: 0.92 Total: 24.39 kcal
Atomic # 6 Polarization: -47.51 SS G_CDS: 4.17 Total: -43.34 kcal
Atomic # 7 Polarization: -96.65 SS G_CDS: -0.71 Total: -97.36 kcal
Atomic # 8 Polarization: -89.65 SS G_CDS: -5.78 Total: -95.43 kcal
Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal
Atomic # 16 Polarization: 93.36 SS G_CDS: -0.28 Total: 93.08 kcal
Total: -75.42 0.20 -75.22 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345159122.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.289 kcal
(2) G-P(sol) polarization free energy of solvation -75.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds