Wall clock time and date at job start Tue Mar 31 2020 12:32:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50706 * 110.56278 * 2 1
4 4 O 1.21290 * 119.99910 * 122.68087 * 3 2 1
5 5 N 1.34772 * 119.99713 * 302.67681 * 3 2 1
6 6 C 1.39922 * 120.00055 * 174.72727 * 5 3 2
7 7 C 1.38932 * 120.04393 * 146.79576 * 6 5 3
8 8 C 1.38119 * 120.03698 * 179.97438 * 7 6 5
9 9 C 1.38217 * 120.12740 * 0.02562 * 8 7 6
10 10 C 1.38758 * 120.08500 * 359.97438 * 9 8 7
11 11 O 1.35896 * 120.02408 * 180.02562 * 10 9 8
12 12 C 1.42910 * 116.99614 * 0.02562 * 11 10 9
13 13 C 1.52997 * 109.46754 * 180.02562 * 12 11 10
14 14 C 1.50707 * 109.46895 * 180.02562 * 13 12 11
15 15 H 1.08005 * 119.99704 * 359.97438 * 14 13 12
16 16 C 1.37879 * 120.00108 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99819 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00013 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.46966 * 89.99661 * 18 16 14
20 20 H 1.48499 * 109.46991 * 209.99806 * 18 16 14
21 21 H 1.48501 * 109.47030 * 329.99979 * 18 16 14
22 22 C 1.38625 * 119.95861 * 359.74801 * 10 9 8
23 23 C 1.54512 * 110.51274 * 122.67369 * 2 1 3
24 24 C 1.54477 * 104.06328 * 118.64589 * 23 2 1
25 25 O 1.44426 * 104.90243 * 335.97058 * 24 23 2
26 26 C 1.44689 * 105.13876 * 40.49238 * 25 24 23
27 27 H 1.08997 * 109.47348 * 297.32001 * 1 2 3
28 28 H 1.08999 * 109.47119 * 57.32703 * 1 2 3
29 29 H 1.09004 * 109.46823 * 177.32604 * 1 2 3
30 30 H 0.97003 * 120.00288 * 354.72422 * 5 3 2
31 31 H 1.07991 * 119.97999 * 359.97438 * 7 6 5
32 32 H 1.07999 * 119.93885 * 180.02562 * 8 7 6
33 33 H 1.08007 * 119.95531 * 180.02562 * 9 8 7
34 34 H 1.09002 * 109.47003 * 300.00124 * 12 11 10
35 35 H 1.08996 * 109.46751 * 59.99983 * 12 11 10
36 36 H 1.09002 * 109.47204 * 299.99679 * 13 12 11
37 37 H 1.08996 * 109.47769 * 60.00283 * 13 12 11
38 38 H 0.97001 * 119.99762 * 180.02562 * 17 16 14
39 39 H 1.08005 * 120.06875 * 180.29647 * 22 10 9
40 40 H 1.08998 * 110.50675 * 0.02562 * 23 2 1
41 41 H 1.08996 * 110.51596 * 237.29296 * 23 2 1
42 42 H 1.09007 * 110.37297 * 94.85398 * 24 23 2
43 43 H 1.09000 * 110.37732 * 217.08211 * 24 23 2
44 44 H 1.09001 * 110.35836 * 200.68035 * 26 25 24
45 45 H 1.09002 * 110.45198 * 78.40820 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0593 1.4110 0.0000
4 8 2.8034 1.7796 0.8841
5 7 1.7060 2.2632 -0.9825
6 6 2.1068 3.6026 -0.9246
7 6 2.3855 4.2965 -2.0955
8 6 2.7806 5.6187 -2.0382
9 6 2.9003 6.2547 -0.8169
10 6 2.6232 5.5666 0.3558
11 8 2.7408 6.1933 1.5559
12 6 3.1537 7.5613 1.5356
13 6 3.2293 8.0924 2.9685
14 6 3.6642 9.5352 2.9471
15 1 3.8667 10.0242 2.0057
16 6 3.8044 10.2305 4.1295
17 7 3.5583 9.6348 5.2758
18 14 4.3441 12.0186 4.1030
19 1 3.1484 12.8953 4.0178
20 1 5.0965 12.3270 5.3456
21 1 5.2162 12.2551 2.9246
22 6 2.2208 4.2412 0.3021
23 6 2.0714 -0.7812 1.2182
24 6 2.8758 -1.9421 0.5923
25 8 2.3078 -2.1204 -0.7236
26 6 2.0714 -0.7813 -1.2178
27 1 -0.3634 0.4716 0.9130
28 1 -0.3633 0.5548 -0.8650
29 1 -0.3633 -1.0266 -0.0479
30 1 1.1738 1.9482 -1.7298
31 1 2.2932 3.8017 -3.0509
32 1 2.9965 6.1567 -2.9494
33 1 3.2091 7.2889 -0.7754
34 1 4.1353 7.6377 1.0679
35 1 2.4335 8.1498 0.9672
36 1 2.2479 8.0160 3.4366
37 1 3.9497 7.5039 3.5366
38 1 3.6566 10.1241 6.1076
39 1 2.0001 3.7053 1.2135
40 1 1.2491 -1.1678 1.8201
41 1 2.7219 -0.1470 1.8203
42 1 3.9303 -1.6762 0.5175
43 1 2.7552 -2.8497 1.1838
44 1 1.3311 -0.7974 -2.0177
45 1 3.0014 -0.3360 -1.5713
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000347638089.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:44
Heat of formation + Delta-G solvation = -101.593610 kcal
Electronic energy + Delta-G solvation = -26138.662273 eV
Core-core repulsion = 22314.192551 eV
Total energy + Delta-G solvation = -3824.469723 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.32703 -39.85253 -38.80446 -37.17085 -34.81073 -33.93600 -33.34712 -30.89386
-30.37055 -29.47774 -28.93660 -27.05847 -25.10571 -24.09979 -23.18952 -22.43678
-21.91907 -20.52726 -19.77667 -18.45358 -17.71027 -16.68509 -16.36336 -16.11149
-15.84616 -15.73566 -15.51044 -15.32301 -15.08068 -14.93023 -14.49832 -14.14463
-13.82832 -13.47248 -13.14308 -12.95014 -12.82666 -12.68560 -12.43502 -12.31886
-11.83008 -11.72672 -11.68705 -11.54268 -11.40144 -11.21943 -10.93864 -10.82345
-10.56557 -10.37086 -10.20665 -9.91831 -9.83564 -9.64821 -9.29153 -8.44947
-8.29834 -7.85567 -6.09385 -4.14146 1.28611 1.60264 2.32694 2.65655
3.27800 3.33644 3.36563 3.48707 3.78929 3.87098 3.93556 4.22354
4.30465 4.41286 4.50846 4.74998 4.77776 4.96172 5.03016 5.11066
5.14567 5.22055 5.26920 5.29816 5.33367 5.36904 5.41498 5.54340
5.63052 5.65465 5.69384 5.85108 6.02329 6.04326 6.22163 6.27265
6.31592 6.49756 6.57376 6.73089 6.93377 7.11621 7.51662 7.65496
7.81645 7.81974 8.06628 8.24549 8.91451 9.50027 11.02235
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.022099 B = 0.002294 C = 0.002140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1266.707435 B =12203.598744 C =13078.870035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.114 4.114
3 C 0.523 3.477
4 O -0.502 6.502
5 N -0.668 5.668
6 C 0.176 3.824
7 C -0.196 4.196
8 C -0.060 4.060
9 C -0.225 4.225
10 C 0.165 3.835
11 O -0.312 6.312
12 C 0.065 3.935
13 C 0.025 3.975
14 C -0.526 4.526
15 H 0.058 0.942
16 C 0.060 3.940
17 N -0.889 5.889
18 Si 0.899 3.101
19 H -0.279 1.279
20 H -0.285 1.285
21 H -0.273 1.273
22 C -0.163 4.163
23 C -0.145 4.145
24 C 0.044 3.956
25 O -0.369 6.369
26 C 0.058 3.942
27 H 0.068 0.932
28 H 0.063 0.937
29 H 0.076 0.924
30 H 0.409 0.591
31 H 0.121 0.879
32 H 0.126 0.874
33 H 0.132 0.868
34 H 0.051 0.949
35 H 0.052 0.948
36 H 0.028 0.972
37 H 0.028 0.972
38 H 0.263 0.737
39 H 0.139 0.861
40 H 0.085 0.915
41 H 0.104 0.896
42 H 0.063 0.937
43 H 0.096 0.904
44 H 0.101 0.899
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.277 -21.724 -16.504 27.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.118 4.118
3 C 0.309 3.691
4 O -0.375 6.375
5 N -0.314 5.314
6 C 0.082 3.918
7 C -0.216 4.216
8 C -0.079 4.079
9 C -0.244 4.244
10 C 0.117 3.883
11 O -0.225 6.225
12 C -0.009 4.009
13 C -0.013 4.013
14 C -0.564 4.564
15 H 0.077 0.923
16 C -0.142 4.142
17 N -0.527 5.527
18 Si 0.727 3.273
19 H -0.205 1.205
20 H -0.210 1.210
21 H -0.198 1.198
22 C -0.184 4.184
23 C -0.183 4.183
24 C -0.033 4.033
25 O -0.288 6.288
26 C -0.019 4.019
27 H 0.087 0.913
28 H 0.082 0.918
29 H 0.095 0.905
30 H 0.245 0.755
31 H 0.139 0.861
32 H 0.144 0.856
33 H 0.150 0.850
34 H 0.070 0.930
35 H 0.070 0.930
36 H 0.046 0.954
37 H 0.047 0.953
38 H 0.073 0.927
39 H 0.156 0.844
40 H 0.103 0.897
41 H 0.122 0.878
42 H 0.082 0.918
43 H 0.114 0.886
44 H 0.119 0.881
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -5.826 -21.753 -15.526 27.353
hybrid contribution 0.138 1.275 -0.366 1.334
sum -5.687 -20.477 -15.892 26.537
Atomic orbital electron populations
1.21859 0.90870 1.03536 1.03090 1.22185 0.98576 0.92316 0.98711
1.20420 0.80343 0.86815 0.81523 1.90782 1.33832 1.77230 1.35630
1.43430 1.54329 1.07812 1.25789 1.17281 0.98108 0.82780 0.93596
1.20609 1.08706 0.95927 0.96380 1.20669 0.96407 0.93654 0.97190
1.21401 1.09096 1.01687 0.92242 1.18946 0.92262 0.91480 0.85609
1.86196 1.81637 1.28646 1.26017 1.23361 0.97677 0.76500 1.03369
1.19132 0.98756 0.95438 0.87924 1.20968 1.46993 0.95516 0.92957
0.92347 1.24998 0.95219 0.98635 0.95380 1.69982 1.48405 1.36823
0.97529 0.86482 0.78744 0.84503 0.77619 1.20498 1.21046 1.19760
1.20244 1.07563 0.92712 0.97904 1.23082 1.01421 0.96968 0.96793
1.23485 0.97233 0.98921 0.83629 1.89191 1.83139 1.24918 1.31503
1.23501 1.00544 0.82978 0.94892 0.91294 0.91808 0.90537 0.75457
0.86073 0.85633 0.84981 0.93022 0.93019 0.95392 0.95335 0.92699
0.84363 0.89666 0.87757 0.91840 0.88583 0.88083 0.91669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.81 8.19 37.16 0.30 -0.50 16
2 C -0.11 -0.90 0.89 -154.09 -0.14 -1.04 16
3 C 0.52 5.84 6.15 -10.98 -0.07 5.78 16
4 O -0.50 -7.88 12.98 5.55 0.07 -7.80 16
5 N -0.67 -6.52 5.18 -9.87 -0.05 -6.57 16
6 C 0.18 2.31 6.27 -83.71 -0.53 1.79 16
7 C -0.20 -2.25 9.96 -39.37 -0.39 -2.64 16
8 C -0.06 -0.76 10.03 -39.63 -0.40 -1.15 16
9 C -0.22 -3.52 9.04 -39.40 -0.36 -3.87 16
10 C 0.17 3.02 6.68 -39.25 -0.26 2.76 16
11 O -0.31 -6.74 10.13 -19.41 -0.20 -6.94 16
12 C 0.06 1.42 4.68 37.16 0.17 1.60 16
13 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16
14 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16
15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16
16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16
17 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16
18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16
19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16
22 C -0.16 -2.75 8.59 -39.25 -0.34 -3.09 16
23 C -0.14 -1.21 6.32 -25.16 -0.16 -1.37 16
24 C 0.04 0.34 7.62 37.93 0.29 0.63 16
25 O -0.37 -3.29 11.67 -35.23 -0.41 -3.70 16
26 C 0.06 0.41 6.72 37.93 0.25 0.66 16
27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
28 H 0.06 0.28 7.56 -51.93 -0.39 -0.12 16
29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.41 2.41 8.28 -40.82 -0.34 2.07 16
31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16
33 H 0.13 2.01 6.29 -52.48 -0.33 1.68 16
34 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16
35 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16
36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
39 H 0.14 2.52 6.43 -52.48 -0.34 2.18 16
40 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16
41 H 0.10 1.09 6.50 -51.93 -0.34 0.75 16
42 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16
43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
44 H 0.10 0.46 7.87 -51.93 -0.41 0.05 16
45 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16
LS Contribution 370.02 15.07 5.58 5.58
Total: -1.00 -33.92 370.02 -8.14 -42.06
By element:
Atomic # 1 Polarization: 7.14 SS G_CDS: -6.67 Total: 0.47 kcal
Atomic # 6 Polarization: -11.28 SS G_CDS: -2.17 Total: -13.45 kcal
Atomic # 7 Polarization: -33.28 SS G_CDS: 0.69 Total: -32.60 kcal
Atomic # 8 Polarization: -17.91 SS G_CDS: -0.54 Total: -18.45 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -33.92 -8.14 -42.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347638089.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.534 kcal
(2) G-P(sol) polarization free energy of solvation -33.920 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds