Wall clock time and date at job start Tue Mar 31 2020 12:32:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50706 * 110.56278 * 2 1
4 4 O 1.21290 * 119.99910 * 122.68087 * 3 2 1
5 5 N 1.34772 * 119.99713 * 302.67681 * 3 2 1
6 6 C 1.39922 * 120.00055 * 174.72727 * 5 3 2
7 7 C 1.38932 * 120.04393 * 146.79576 * 6 5 3
8 8 C 1.38119 * 120.03698 * 179.97438 * 7 6 5
9 9 C 1.38217 * 120.12740 * 0.02562 * 8 7 6
10 10 C 1.38758 * 120.08500 * 359.97438 * 9 8 7
11 11 O 1.35896 * 120.02408 * 180.02562 * 10 9 8
12 12 C 1.42910 * 116.99614 * 0.02562 * 11 10 9
13 13 C 1.52997 * 109.46754 * 180.02562 * 12 11 10
14 14 C 1.50707 * 109.46895 * 180.02562 * 13 12 11
15 15 H 1.08005 * 119.99704 * 359.97438 * 14 13 12
16 16 C 1.37879 * 120.00108 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99819 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 120.00013 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.46966 * 89.99661 * 18 16 14
20 20 H 1.48499 * 109.46991 * 209.99806 * 18 16 14
21 21 H 1.48501 * 109.47030 * 329.99979 * 18 16 14
22 22 C 1.38625 * 119.95861 * 359.74801 * 10 9 8
23 23 C 1.54512 * 110.51274 * 122.67369 * 2 1 3
24 24 C 1.54477 * 104.06328 * 118.64589 * 23 2 1
25 25 O 1.44426 * 104.90243 * 335.97058 * 24 23 2
26 26 C 1.44689 * 105.13876 * 40.49238 * 25 24 23
27 27 H 1.08997 * 109.47348 * 297.32001 * 1 2 3
28 28 H 1.08999 * 109.47119 * 57.32703 * 1 2 3
29 29 H 1.09004 * 109.46823 * 177.32604 * 1 2 3
30 30 H 0.97003 * 120.00288 * 354.72422 * 5 3 2
31 31 H 1.07991 * 119.97999 * 359.97438 * 7 6 5
32 32 H 1.07999 * 119.93885 * 180.02562 * 8 7 6
33 33 H 1.08007 * 119.95531 * 180.02562 * 9 8 7
34 34 H 1.09002 * 109.47003 * 300.00124 * 12 11 10
35 35 H 1.08996 * 109.46751 * 59.99983 * 12 11 10
36 36 H 1.09002 * 109.47204 * 299.99679 * 13 12 11
37 37 H 1.08996 * 109.47769 * 60.00283 * 13 12 11
38 38 H 0.97001 * 119.99762 * 180.02562 * 17 16 14
39 39 H 1.08005 * 120.06875 * 180.29647 * 22 10 9
40 40 H 1.08998 * 110.50675 * 0.02562 * 23 2 1
41 41 H 1.08996 * 110.51596 * 237.29296 * 23 2 1
42 42 H 1.09007 * 110.37297 * 94.85398 * 24 23 2
43 43 H 1.09000 * 110.37732 * 217.08211 * 24 23 2
44 44 H 1.09001 * 110.35836 * 200.68035 * 26 25 24
45 45 H 1.09002 * 110.45198 * 78.40820 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0593 1.4110 0.0000
4 8 2.8034 1.7796 0.8841
5 7 1.7060 2.2632 -0.9825
6 6 2.1068 3.6026 -0.9246
7 6 2.3855 4.2965 -2.0955
8 6 2.7806 5.6187 -2.0382
9 6 2.9003 6.2547 -0.8169
10 6 2.6232 5.5666 0.3558
11 8 2.7408 6.1933 1.5559
12 6 3.1537 7.5613 1.5356
13 6 3.2293 8.0924 2.9685
14 6 3.6642 9.5352 2.9471
15 1 3.8667 10.0242 2.0057
16 6 3.8044 10.2305 4.1295
17 7 3.5583 9.6348 5.2758
18 14 4.3441 12.0186 4.1030
19 1 3.1484 12.8953 4.0178
20 1 5.0965 12.3270 5.3456
21 1 5.2162 12.2551 2.9246
22 6 2.2208 4.2412 0.3021
23 6 2.0714 -0.7812 1.2182
24 6 2.8758 -1.9421 0.5923
25 8 2.3078 -2.1204 -0.7236
26 6 2.0714 -0.7813 -1.2178
27 1 -0.3634 0.4716 0.9130
28 1 -0.3633 0.5548 -0.8650
29 1 -0.3633 -1.0266 -0.0479
30 1 1.1738 1.9482 -1.7298
31 1 2.2932 3.8017 -3.0509
32 1 2.9965 6.1567 -2.9494
33 1 3.2091 7.2889 -0.7754
34 1 4.1353 7.6377 1.0679
35 1 2.4335 8.1498 0.9672
36 1 2.2479 8.0160 3.4366
37 1 3.9497 7.5039 3.5366
38 1 3.6566 10.1241 6.1076
39 1 2.0001 3.7053 1.2135
40 1 1.2491 -1.1678 1.8201
41 1 2.7219 -0.1470 1.8203
42 1 3.9303 -1.6762 0.5175
43 1 2.7552 -2.8497 1.1838
44 1 1.3311 -0.7974 -2.0177
45 1 3.0014 -0.3360 -1.5713
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000347638089.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:43
Heat of formation + Delta-G solvation = -124.661869 kcal
Electronic energy + Delta-G solvation = -26139.662588 eV
Core-core repulsion = 22314.192551 eV
Total energy + Delta-G solvation = -3825.470037 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-42.19813 -40.99070 -39.79289 -38.40525 -35.89623 -35.42099 -34.61758 -32.62310
-31.22741 -30.79627 -30.00256 -27.58737 -27.03747 -25.12482 -23.91806 -23.60220
-23.34987 -21.96496 -20.65881 -19.69575 -18.63052 -18.32786 -17.43991 -17.08012
-16.99504 -16.91309 -16.79809 -16.55161 -16.38590 -15.98145 -15.80849 -14.98355
-14.66514 -14.47394 -14.37011 -14.30413 -14.29582 -13.62486 -13.38566 -13.32620
-13.23514 -13.08285 -12.76427 -12.67661 -12.57010 -12.33384 -12.24068 -12.04826
-11.88067 -11.78112 -11.61309 -11.43733 -11.27240 -10.88195 -10.82838 -10.64298
-9.46502 -9.05267 -8.28320 -6.42762 0.18015 0.45844 1.39604 1.41195
1.42702 1.53868 1.78918 2.27098 2.49903 2.79306 2.90837 3.05972
3.18537 3.59381 3.70922 3.85189 3.88975 4.12661 4.14207 4.17027
4.18439 4.23019 4.24309 4.41465 4.52242 4.54649 4.62067 4.64887
4.70564 4.74827 4.80437 4.82824 4.93020 5.01563 5.18806 5.21894
5.25382 5.30026 5.38332 5.42651 5.49165 5.65719 5.66307 5.87624
6.04461 6.29123 6.53173 6.72194 6.99213 7.27615 8.85195
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.022099 B = 0.002294 C = 0.002140
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1266.707435 B =12203.598744 C =13078.870035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.107 4.107
3 C 0.520 3.480
4 O -0.555 6.555
5 N -0.651 5.651
6 C 0.178 3.822
7 C -0.173 4.173
8 C -0.052 4.052
9 C -0.234 4.234
10 C 0.124 3.876
11 O -0.346 6.346
12 C 0.085 3.915
13 C 0.027 3.973
14 C -0.545 4.545
15 H 0.074 0.926
16 C -0.001 4.001
17 N -0.933 5.933
18 Si 0.980 3.020
19 H -0.268 1.268
20 H -0.282 1.282
21 H -0.257 1.257
22 C -0.187 4.187
23 C -0.149 4.149
24 C 0.045 3.955
25 O -0.380 6.380
26 C 0.060 3.940
27 H 0.055 0.945
28 H 0.086 0.914
29 H 0.091 0.909
30 H 0.432 0.568
31 H 0.171 0.829
32 H 0.167 0.833
33 H 0.133 0.867
34 H 0.061 0.939
35 H 0.066 0.934
36 H -0.003 1.003
37 H -0.006 1.006
38 H 0.267 0.733
39 H 0.109 0.891
40 H 0.097 0.903
41 H 0.075 0.925
42 H 0.056 0.944
43 H 0.113 0.887
44 H 0.135 0.865
45 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.880 -21.914 -20.701 30.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.110 4.110
3 C 0.309 3.691
4 O -0.431 6.431
5 N -0.298 5.298
6 C 0.083 3.917
7 C -0.193 4.193
8 C -0.070 4.070
9 C -0.253 4.253
10 C 0.077 3.923
11 O -0.261 6.261
12 C 0.011 3.989
13 C -0.010 4.010
14 C -0.583 4.583
15 H 0.092 0.908
16 C -0.200 4.200
17 N -0.573 5.573
18 Si 0.803 3.197
19 H -0.194 1.194
20 H -0.207 1.207
21 H -0.181 1.181
22 C -0.208 4.208
23 C -0.187 4.187
24 C -0.031 4.031
25 O -0.299 6.299
26 C -0.017 4.017
27 H 0.074 0.926
28 H 0.105 0.895
29 H 0.109 0.891
30 H 0.273 0.727
31 H 0.188 0.812
32 H 0.184 0.816
33 H 0.151 0.849
34 H 0.079 0.921
35 H 0.084 0.916
36 H 0.015 0.985
37 H 0.012 0.988
38 H 0.076 0.924
39 H 0.127 0.873
40 H 0.116 0.884
41 H 0.094 0.906
42 H 0.074 0.926
43 H 0.131 0.869
44 H 0.153 0.847
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -6.462 -21.980 -19.787 30.272
hybrid contribution 0.295 1.177 0.879 1.498
sum -6.166 -20.803 -18.909 28.781
Atomic orbital electron populations
1.21897 0.88926 1.04761 1.03529 1.22202 0.99877 0.89843 0.99117
1.21090 0.79333 0.88077 0.80649 1.90779 1.36297 1.78401 1.37655
1.43329 1.53944 1.06299 1.26235 1.17422 0.97326 0.84069 0.92875
1.21141 1.05354 0.95415 0.97370 1.21160 0.94544 0.94132 0.97169
1.21543 1.09399 1.01850 0.92544 1.19258 0.95382 0.92302 0.85314
1.86098 1.82940 1.28250 1.28792 1.22899 0.98663 0.77418 0.99931
1.18982 0.95882 0.95533 0.90638 1.21396 1.46969 0.96044 0.93849
0.90802 1.26110 0.94951 1.04129 0.94764 1.70140 1.49509 1.39161
0.98451 0.85233 0.78678 0.77734 0.78099 1.19361 1.20728 1.18131
1.20220 1.09341 0.92509 0.98697 1.23092 1.01529 0.96989 0.97126
1.23513 0.96663 0.99318 0.83650 1.89179 1.83147 1.25863 1.31703
1.23654 1.01281 0.81930 0.94882 0.92602 0.89535 0.89055 0.72723
0.81190 0.81559 0.84945 0.92081 0.91601 0.98489 0.98782 0.92430
0.87299 0.88444 0.90617 0.92551 0.86889 0.84726 0.92126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.29 8.19 71.98 0.59 -0.70 16
2 C -0.11 -1.56 0.89 -51.91 -0.05 -1.61 16
3 C 0.52 11.56 6.15 87.66 0.54 12.10 16
4 O -0.55 -18.64 12.98 -3.06 -0.04 -18.68 16
5 N -0.65 -11.40 5.18 -303.54 -1.57 -12.98 16
6 C 0.18 4.41 6.27 38.14 0.24 4.65 16
7 C -0.17 -3.24 9.96 22.41 0.22 -3.02 16
8 C -0.05 -1.10 10.03 22.24 0.22 -0.88 16
9 C -0.23 -7.12 9.04 22.39 0.20 -6.92 16
10 C 0.12 4.73 6.68 22.49 0.15 4.88 16
11 O -0.35 -16.14 10.13 -92.38 -0.94 -17.07 16
12 C 0.09 3.91 4.68 71.98 0.34 4.25 16
13 C 0.03 1.54 5.34 29.85 0.16 1.69 16
14 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16
15 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16
16 C 0.00 -0.07 5.46 84.65 0.46 0.39 16
17 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16
18 Si 0.98 44.11 29.54 68.60 2.03 46.14 16
19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16
20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
22 C -0.19 -6.58 8.59 22.49 0.19 -6.39 16
23 C -0.15 -2.53 6.32 31.61 0.20 -2.33 16
24 C 0.05 0.67 7.62 72.48 0.55 1.22 16
25 O -0.38 -6.01 11.67 -148.98 -1.74 -7.75 16
26 C 0.06 0.68 6.72 72.49 0.49 1.17 16
27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
28 H 0.09 0.43 7.56 -2.39 -0.02 0.42 16
29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.43 3.37 8.28 -92.71 -0.77 2.61 16
31 H 0.17 1.61 8.06 -2.92 -0.02 1.59 16
32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16
33 H 0.13 3.93 6.29 -2.91 -0.02 3.91 16
34 H 0.06 2.63 7.66 -2.39 -0.02 2.61 16
35 H 0.07 2.78 7.66 -2.39 -0.02 2.76 16
36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
39 H 0.11 4.41 6.43 -2.91 -0.02 4.39 16
40 H 0.10 1.36 7.73 -2.39 -0.02 1.34 16
41 H 0.08 1.75 6.50 -2.39 -0.02 1.74 16
42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16
44 H 0.13 0.63 7.87 -2.39 -0.02 0.61 16
45 H 0.06 0.76 7.86 -2.39 -0.02 0.74 16
Total: -1.00 -80.44 370.02 3.00 -77.44
By element:
Atomic # 1 Polarization: 13.36 SS G_CDS: 0.23 Total: 13.59 kcal
Atomic # 6 Polarization: -27.45 SS G_CDS: 4.75 Total: -22.71 kcal
Atomic # 7 Polarization: -69.67 SS G_CDS: -1.29 Total: -70.96 kcal
Atomic # 8 Polarization: -40.78 SS G_CDS: -2.71 Total: -43.50 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -80.44 3.00 -77.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347638089.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.224 kcal
(2) G-P(sol) polarization free energy of solvation -80.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds