Wall clock time and date at job start Tue Mar 31 2020 13:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 116.99837 * 2 1 4 4 C 1.38747 * 120.05507 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94387 * 179.72536 * 4 3 2 6 6 C 1.38285 * 120.05310 * 0.27331 * 5 4 3 7 7 C 1.38243 * 120.11500 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05442 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02704 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.46820 * 115.62043 * 9 8 7 11 11 C 1.52995 * 109.47075 * 235.62152 * 9 8 7 12 12 C 1.50703 * 109.47255 * 355.62386 * 9 8 7 13 13 O 1.21281 * 119.99900 * 113.44599 * 12 9 8 14 14 N 1.34780 * 120.00005 * 293.45339 * 12 9 8 15 15 C 1.47067 * 136.05328 * 354.92666 * 14 12 9 16 16 C 1.53766 * 87.88377 * 152.96825 * 15 14 12 17 17 O 1.42899 * 114.39128 * 272.67434 * 16 15 14 18 18 C 1.50698 * 114.26436 * 139.79195 * 16 15 14 19 19 H 1.07997 * 119.99803 * 266.47245 * 18 16 15 20 20 C 1.37873 * 120.00198 * 86.47676 * 18 16 15 21 21 N 1.31516 * 119.99921 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00332 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46840 * 59.99861 * 22 20 18 24 24 H 1.48491 * 109.47292 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47030 * 300.00168 * 22 20 18 26 26 C 1.47063 * 136.05837 * 175.30411 * 14 12 9 27 27 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47245 * 300.00268 * 1 2 3 29 29 H 1.08997 * 109.46849 * 60.00504 * 1 2 3 30 30 H 1.08001 * 120.02952 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.97004 * 180.25968 * 5 4 3 32 32 H 1.08004 * 119.93988 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.97651 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47247 * 60.00182 * 10 9 8 35 35 H 1.09007 * 109.47116 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47336 * 300.00083 * 10 9 8 37 37 H 1.09009 * 109.47143 * 52.63128 * 11 9 8 38 38 H 1.09002 * 109.47127 * 172.62197 * 11 9 8 39 39 H 1.08994 * 109.47535 * 292.62436 * 11 9 8 40 40 H 1.09007 * 113.46804 * 267.69768 * 15 14 12 41 41 H 1.08996 * 113.47076 * 38.14555 * 15 14 12 42 42 H 0.96696 * 113.99964 * 273.58224 * 17 16 15 43 43 H 0.97001 * 120.00125 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.46719 * 321.86528 * 26 14 12 45 45 H 1.08998 * 113.46922 * 92.29875 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 0.0052 6 6 3.3018 3.6758 0.0058 7 6 4.0559 2.5172 0.0001 8 6 3.4311 1.2849 -0.0068 9 6 4.2537 0.0222 -0.0136 10 6 4.0093 -0.7526 1.2828 11 6 3.8499 -0.8431 -1.2089 12 6 5.7150 0.3753 -0.1199 13 8 6.4631 0.1462 0.8068 14 7 6.1904 0.9457 -1.2447 15 6 5.6499 1.2855 -2.5695 16 6 6.6986 2.4074 -2.6466 17 8 6.2819 3.6456 -2.0675 18 6 7.3346 2.5685 -4.0032 19 1 8.2617 2.0624 -4.2285 20 6 6.7331 3.3620 -4.9569 21 7 5.6039 3.9779 -4.6827 22 14 7.5218 3.5622 -6.6383 23 1 7.6327 2.2345 -7.2943 24 1 6.6838 4.4585 -7.4746 25 1 8.8757 4.1522 -6.4829 26 6 7.4795 1.4962 -1.6896 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.2127 2.3203 -0.0014 31 1 1.3338 4.5113 0.0090 32 1 3.7920 4.6382 0.0098 33 1 5.1343 2.5753 0.0001 34 1 2.9524 -1.0080 1.3598 35 1 4.6041 -1.6661 1.2778 36 1 4.2971 -0.1360 2.1344 37 1 3.8994 -0.2486 -2.1212 38 1 4.5305 -1.6907 -1.2903 39 1 2.8322 -1.2067 -1.0669 40 1 5.7974 0.5017 -3.3126 41 1 4.6233 1.6505 -2.5390 42 1 5.7903 4.2172 -2.6729 43 1 5.1808 4.5365 -5.3535 44 1 8.0116 2.0404 -0.9093 45 1 8.1093 0.7679 -2.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356560077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:05 Heat of formation + Delta-G solvation = -53.147647 kcal Electronic energy + Delta-G solvation = -28891.015639 eV Core-core repulsion = 25068.646691 eV Total energy + Delta-G solvation = -3822.368948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.72036 -39.41767 -37.67864 -37.01962 -34.73946 -33.95777 -32.16593 -30.11252 -29.55540 -28.71625 -27.27294 -26.86705 -25.47142 -24.96710 -23.13102 -22.09303 -21.22929 -19.55836 -18.28478 -17.72256 -17.28255 -16.31063 -16.04149 -15.69624 -15.52726 -15.17247 -14.68412 -14.56382 -14.21811 -14.13669 -13.51720 -13.41508 -13.20717 -13.01102 -12.61333 -12.40409 -12.19742 -12.07478 -11.91059 -11.83516 -11.69496 -11.53147 -11.38794 -11.06779 -11.02885 -10.98274 -10.86928 -10.81015 -10.46629 -10.36348 -10.23054 -9.51137 -9.06315 -8.74414 -8.56475 -8.29640 -7.90465 -7.77869 -6.38329 -4.48359 1.59758 1.73323 3.16456 3.21802 3.22392 3.25194 3.35087 3.62616 4.04374 4.19182 4.81964 4.83894 4.91585 4.99977 5.10471 5.14553 5.32642 5.37842 5.39978 5.41640 5.59775 5.65146 5.72669 5.92580 5.98262 6.01027 6.10559 6.13254 6.15715 6.22774 6.33324 6.40152 6.44806 6.53905 6.56073 6.58740 6.71076 6.75136 6.77072 6.94513 7.07170 7.16640 7.54500 7.64628 7.83249 8.52862 8.56974 8.82775 9.22734 9.50951 10.67817 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.004881 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.112361 B = 5735.228459 C = 6447.161957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.214 4.214 5 C -0.086 4.086 6 C -0.141 4.141 7 C -0.058 4.058 8 C -0.103 4.103 9 C -0.022 4.022 10 C -0.120 4.120 11 C -0.142 4.142 12 C 0.546 3.454 13 O -0.562 6.562 14 N -0.632 5.632 15 C 0.075 3.925 16 C 0.243 3.757 17 O -0.569 6.569 18 C -0.534 4.534 19 H 0.070 0.930 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.104 3.896 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.393 0.607 43 H 0.274 0.726 44 H 0.065 0.935 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 -4.514 5.694 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.086 3.914 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.159 4.159 7 C -0.076 4.076 8 C -0.104 4.104 9 C -0.025 4.025 10 C -0.178 4.178 11 C -0.199 4.199 12 C 0.335 3.665 13 O -0.442 6.442 14 N -0.365 5.365 15 C -0.048 4.048 16 C 0.201 3.799 17 O -0.382 6.382 18 C -0.572 4.572 19 H 0.089 0.911 20 C -0.129 4.129 21 N -0.537 5.537 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.018 4.018 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.250 0.750 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.446 -5.036 6.806 13.446 hybrid contribution -0.304 0.500 -1.584 1.688 sum -10.750 -4.536 5.222 12.783 Atomic orbital electron populations 1.23004 0.79381 1.03452 1.01133 1.86124 1.20499 1.26864 1.88872 1.18639 0.91183 0.84088 0.97465 1.21064 0.99419 0.92379 1.10378 1.20906 0.94756 0.96694 0.98037 1.21052 0.93479 0.98743 1.02614 1.21313 1.01332 0.90693 0.94268 1.18897 0.90022 0.94531 1.06984 1.19486 0.90694 0.93880 0.98416 1.21637 1.01604 0.99504 0.95047 1.21973 1.02295 0.98978 0.96663 1.19879 0.89356 0.76022 0.81234 1.90623 1.59670 1.55060 1.38819 1.49769 1.15704 1.58066 1.12918 1.24250 1.01206 0.98933 0.80456 1.19539 0.88897 0.81726 0.89718 1.86007 1.77397 1.30388 1.44372 1.21392 1.09388 1.30121 0.96315 0.91135 1.25044 0.94249 0.94237 0.99341 1.69259 1.17260 1.31167 1.35965 0.86410 0.79393 0.78317 0.82523 1.19943 1.21036 1.19868 1.23338 0.87409 0.94708 0.96360 0.88631 0.93000 0.92838 0.85910 0.86201 0.85753 0.84127 0.91342 0.92317 0.92307 0.91607 0.92649 0.90447 0.90482 0.91535 0.74997 0.91607 0.91683 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.07 6.27 -19.43 -0.12 -4.19 16 3 C 0.13 1.99 6.28 -39.22 -0.25 1.75 16 4 C -0.21 -2.94 9.04 -39.43 -0.36 -3.29 16 5 C -0.09 -1.22 10.04 -39.60 -0.40 -1.62 16 6 C -0.14 -2.33 10.04 -39.56 -0.40 -2.73 16 7 C -0.06 -1.08 7.98 -39.60 -0.32 -1.40 16 8 C -0.10 -1.80 4.41 -104.47 -0.46 -2.26 16 9 C -0.02 -0.38 0.55 -156.82 -0.09 -0.47 16 10 C -0.12 -1.92 7.61 37.15 0.28 -1.64 16 11 C -0.14 -2.26 7.72 37.15 0.29 -1.97 16 12 C 0.55 11.38 5.23 -10.98 -0.06 11.32 16 13 O -0.56 -13.19 16.76 5.56 0.09 -13.10 16 14 N -0.63 -13.27 2.51 -185.03 -0.46 -13.74 16 15 C 0.07 1.59 5.49 -8.36 -0.05 1.54 16 16 C 0.24 5.66 1.58 -91.12 -0.14 5.51 16 17 O -0.57 -13.84 13.03 -35.23 -0.46 -14.30 16 18 C -0.53 -13.13 8.70 -34.44 -0.30 -13.43 16 19 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.80 5.39 -17.82 -0.10 1.71 16 21 N -0.90 -22.26 11.01 55.43 0.61 -21.65 16 22 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.10 2.25 8.02 -8.51 -0.07 2.19 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.14 3.00 5.34 -52.49 -0.28 2.72 16 34 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 35 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 37 H 0.06 1.11 5.75 -51.92 -0.30 0.82 16 38 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 39 H 0.08 1.11 6.09 -51.93 -0.32 0.79 16 40 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 41 H 0.07 1.47 6.78 -51.93 -0.35 1.12 16 42 H 0.39 9.87 6.32 45.56 0.29 10.16 16 43 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -27.86 355.74 -7.17 -35.03 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -5.76 Total: 15.94 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.41 Total: -3.57 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.15 Total: -35.39 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.49 Total: -31.59 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.86 -7.17 -35.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356560077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.115 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds