Wall clock time and date at job start Tue Mar 31 2020 12:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00025 * 2 1 4 4 N 1.46500 * 109.46903 * 125.00051 * 3 2 1 5 5 C 1.46492 * 120.00049 * 269.99750 * 4 3 2 6 6 C 1.50701 * 109.47141 * 270.00087 * 5 4 3 7 7 H 1.08005 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00253 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00130 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00386 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47166 * 59.99894 * 10 8 6 12 12 H 1.48494 * 109.47294 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47079 * 300.00111 * 10 8 6 14 14 C 1.34781 * 119.99967 * 90.00217 * 4 3 2 15 15 O 1.21279 * 119.99931 * 179.97438 * 14 4 3 16 16 C 1.50708 * 119.99858 * 359.97438 * 14 4 3 17 17 O 1.42902 * 109.46970 * 180.02562 * 16 14 4 18 18 C 1.35986 * 116.99897 * 180.02562 * 17 16 14 19 19 C 1.38570 * 120.07459 * 359.97438 * 18 17 16 20 20 C 1.38238 * 119.99772 * 180.23600 * 19 18 17 21 21 C 1.38254 * 120.15025 * 359.48447 * 20 19 18 22 22 C 1.50695 * 119.93000 * 180.28079 * 21 20 19 23 23 C 1.38247 * 120.14245 * 0.51541 * 21 20 19 24 24 C 1.38561 * 119.99676 * 359.74288 * 23 21 20 25 25 O 1.35996 * 120.06955 * 179.97438 * 24 23 21 26 26 C 1.42910 * 116.99963 * 0.02562 * 25 24 23 27 27 H 1.08004 * 119.99869 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99965 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99581 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47237 * 4.99944 * 3 2 1 31 31 H 1.08999 * 109.46459 * 245.00188 * 3 2 1 32 32 H 1.08998 * 109.47406 * 30.00324 * 5 4 3 33 33 H 1.08999 * 109.47396 * 150.00437 * 5 4 3 34 34 H 0.96996 * 120.00161 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47036 * 60.00274 * 16 14 4 36 36 H 1.08999 * 109.47097 * 300.00525 * 16 14 4 37 37 H 1.08002 * 119.99648 * 359.95072 * 19 18 17 38 38 H 1.08000 * 119.92674 * 179.74797 * 20 19 18 39 39 H 1.09009 * 109.47236 * 270.23223 * 22 21 20 40 40 H 1.09003 * 109.47238 * 30.23079 * 22 21 20 41 41 H 1.09000 * 109.47485 * 150.23458 * 22 21 20 42 42 H 1.08001 * 119.99709 * 179.76743 * 23 21 20 43 43 H 1.08998 * 109.46848 * 60.00277 * 26 25 24 44 44 H 1.09000 * 109.47018 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.46792 * 299.99909 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8370 1.6364 8 6 2.5186 4.0667 3.6081 9 7 1.9591 3.4660 4.6357 10 14 2.8718 5.8997 3.6767 11 1 2.1360 6.5868 2.5850 12 1 2.4300 6.4403 4.9873 13 1 4.3297 6.1295 3.5120 14 6 4.2498 0.8661 0.9824 15 8 5.0200 0.8887 1.9189 16 6 4.6970 0.3173 -0.3481 17 8 6.0570 -0.1110 -0.2538 18 6 6.6184 -0.6352 -1.3760 19 6 5.8762 -0.7354 -2.5419 20 6 6.4470 -1.2730 -3.6805 21 6 7.7612 -1.7017 -3.6623 22 6 8.3804 -2.2811 -4.9081 23 6 8.5072 -1.6046 -2.5024 24 6 7.9395 -1.0716 -1.3563 25 8 8.6718 -0.9758 -0.2143 26 6 10.0211 -1.4436 -0.2677 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6212 1.4025 -0.9314 32 1 1.4889 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7296 3.9748 5.4289 35 1 4.6121 1.0937 -1.1084 36 1 4.0678 -0.5296 -0.6218 37 1 4.8505 -0.3978 -2.5598 38 1 5.8663 -1.3543 -4.5874 39 1 8.2161 -3.3586 -4.9282 40 1 7.9218 -1.8272 -5.7866 41 1 9.4511 -2.0768 -4.9105 42 1 9.5325 -1.9437 -2.4899 43 1 10.5727 -0.8768 -1.0178 44 1 10.4910 -1.3094 0.7066 45 1 10.0289 -2.5008 -0.5328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359437902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:19 Heat of formation + Delta-G solvation = -57.178253 kcal Electronic energy + Delta-G solvation = -26486.971696 eV Core-core repulsion = 22664.427968 eV Total energy + Delta-G solvation = -3822.543728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66808 -39.30694 -38.08762 -37.19175 -35.65934 -33.22218 -32.13082 -32.04555 -30.47091 -29.13959 -27.86652 -26.96732 -25.97441 -25.38594 -23.03082 -22.13834 -21.43779 -20.02580 -18.67203 -18.47160 -17.18217 -16.78212 -16.54644 -16.18779 -15.94571 -15.53495 -15.47323 -14.72604 -14.63321 -14.49254 -14.22422 -14.07091 -13.86247 -13.71534 -13.15284 -12.96749 -12.50773 -12.41640 -12.27008 -12.02843 -11.98695 -11.73727 -11.35022 -11.32196 -11.21853 -11.17645 -11.04383 -10.91249 -10.73858 -10.58272 -10.18233 -9.66570 -9.24434 -8.93097 -8.81622 -8.42166 -7.78129 -7.74126 -6.03430 -4.08417 1.15748 1.32100 2.38155 2.98796 3.22655 3.29817 3.33473 3.37851 3.42381 3.57700 4.10901 4.45851 4.57354 4.67171 4.84111 4.90192 4.96822 5.02834 5.04775 5.11820 5.17589 5.26323 5.29262 5.30892 5.35352 5.37043 5.39173 5.40146 5.50865 5.57707 5.70513 5.96402 6.02772 6.12610 6.13696 6.41344 6.57134 6.74346 6.84778 6.97131 7.10835 7.43103 7.49263 7.59820 7.92600 8.22613 8.31633 8.88215 9.03037 9.56474 11.04739 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003137 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.436158 B = 8923.228000 C =10111.239719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.133 3.867 4 N -0.590 5.590 5 C 0.250 3.750 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.508 3.492 15 O -0.512 6.512 16 C 0.040 3.960 17 O -0.276 6.276 18 C 0.103 3.897 19 C -0.173 4.173 20 C -0.116 4.116 21 C -0.093 4.093 22 C -0.108 4.108 23 C -0.174 4.174 24 C 0.104 3.896 25 O -0.300 6.300 26 C 0.027 3.973 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.133 0.867 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -12.335 -19.697 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.009 3.991 4 N -0.324 5.324 5 C 0.131 3.869 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.292 3.708 15 O -0.387 6.387 16 C -0.039 4.039 17 O -0.188 6.188 18 C 0.056 3.944 19 C -0.192 4.192 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.165 4.165 23 C -0.193 4.193 24 C 0.058 3.942 25 O -0.213 6.213 26 C -0.068 4.068 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.312 -12.162 -18.571 23.704 hybrid contribution 0.053 0.891 -0.228 0.922 sum 8.365 -11.270 -18.799 23.460 Atomic orbital electron populations 1.23834 0.95796 1.01862 1.00076 1.23428 0.96515 0.98913 1.00352 1.20638 0.93304 0.95676 0.89445 1.48161 1.09748 1.60505 1.13943 1.19311 0.95475 0.93778 0.78330 1.21396 1.40753 0.93255 1.01379 0.92433 1.24927 0.94996 0.98806 0.95280 1.69924 1.41889 1.36295 1.05187 0.86554 0.78901 0.84812 0.77138 1.20249 1.21170 1.20112 1.19718 0.82924 0.79563 0.88573 1.90734 1.52103 1.54645 1.41176 1.22713 0.82303 1.00018 0.98837 1.86310 1.26274 1.75218 1.30958 1.18385 0.90641 0.98238 0.87121 1.21103 1.00636 1.05153 0.92314 1.20701 0.94633 1.00230 0.97907 1.19563 0.94137 1.00494 0.95102 1.20715 1.00505 1.00643 0.94616 1.20891 1.00871 1.05512 0.92043 1.18264 0.89364 0.99762 0.86801 1.86297 1.24517 1.79405 1.31040 1.23061 0.81166 0.98741 1.03848 0.88700 0.88177 0.87776 0.89006 0.91000 0.94653 0.93738 0.92630 0.89655 0.89785 0.84632 0.85665 0.91345 0.91526 0.91803 0.84935 0.92890 0.88146 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.36 9.74 -36.03 -0.35 -2.71 16 3 C 0.13 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.59 -12.52 2.44 -176.44 -0.43 -12.95 16 5 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 6 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 10 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.51 11.08 7.75 -10.98 -0.09 11.00 16 15 O -0.51 -13.92 16.08 -14.35 -0.23 -14.15 16 16 C 0.04 0.65 3.77 36.01 0.14 0.79 16 17 O -0.28 -5.15 9.45 -47.32 -0.45 -5.60 16 18 C 0.10 1.58 6.70 -39.12 -0.26 1.32 16 19 C -0.17 -2.08 9.04 -39.46 -0.36 -2.44 16 20 C -0.12 -1.19 9.69 -39.58 -0.38 -1.57 16 21 C -0.09 -0.92 5.88 -104.61 -0.62 -1.54 16 22 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 23 C -0.17 -1.94 8.69 -39.46 -0.34 -2.28 16 24 C 0.10 1.51 6.70 -39.12 -0.26 1.24 16 25 O -0.30 -4.60 10.28 -34.23 -0.35 -4.95 16 26 C 0.03 0.26 9.81 101.05 0.99 1.25 16 27 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 29 H 0.10 1.34 7.83 -52.48 -0.41 0.93 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 36 H 0.08 1.10 7.29 -51.93 -0.38 0.72 16 37 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 40 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 42 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 43 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -36.30 382.31 -7.85 -44.15 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.63 Total: -1.06 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.23 Total: -2.20 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.31 Total: -38.97 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.03 Total: -24.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.30 -7.85 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.031 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds