Wall clock time and date at job start Tue Mar 31 2020 12:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00025 * 2 1 4 4 N 1.46500 * 109.46903 * 125.00051 * 3 2 1 5 5 C 1.46492 * 120.00049 * 269.99750 * 4 3 2 6 6 C 1.50701 * 109.47141 * 270.00087 * 5 4 3 7 7 H 1.08005 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00253 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00130 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00386 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47166 * 59.99894 * 10 8 6 12 12 H 1.48494 * 109.47294 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47079 * 300.00111 * 10 8 6 14 14 C 1.34781 * 119.99967 * 90.00217 * 4 3 2 15 15 O 1.21279 * 119.99931 * 179.97438 * 14 4 3 16 16 C 1.50708 * 119.99858 * 359.97438 * 14 4 3 17 17 O 1.42902 * 109.46970 * 180.02562 * 16 14 4 18 18 C 1.35986 * 116.99897 * 180.02562 * 17 16 14 19 19 C 1.38570 * 120.07459 * 359.97438 * 18 17 16 20 20 C 1.38238 * 119.99772 * 180.23600 * 19 18 17 21 21 C 1.38254 * 120.15025 * 359.48447 * 20 19 18 22 22 C 1.50695 * 119.93000 * 180.28079 * 21 20 19 23 23 C 1.38247 * 120.14245 * 0.51541 * 21 20 19 24 24 C 1.38561 * 119.99676 * 359.74288 * 23 21 20 25 25 O 1.35996 * 120.06955 * 179.97438 * 24 23 21 26 26 C 1.42910 * 116.99963 * 0.02562 * 25 24 23 27 27 H 1.08004 * 119.99869 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99965 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99581 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47237 * 4.99944 * 3 2 1 31 31 H 1.08999 * 109.46459 * 245.00188 * 3 2 1 32 32 H 1.08998 * 109.47406 * 30.00324 * 5 4 3 33 33 H 1.08999 * 109.47396 * 150.00437 * 5 4 3 34 34 H 0.96996 * 120.00161 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47036 * 60.00274 * 16 14 4 36 36 H 1.08999 * 109.47097 * 300.00525 * 16 14 4 37 37 H 1.08002 * 119.99648 * 359.95072 * 19 18 17 38 38 H 1.08000 * 119.92674 * 179.74797 * 20 19 18 39 39 H 1.09009 * 109.47236 * 270.23223 * 22 21 20 40 40 H 1.09003 * 109.47238 * 30.23079 * 22 21 20 41 41 H 1.09000 * 109.47485 * 150.23458 * 22 21 20 42 42 H 1.08001 * 119.99709 * 179.76743 * 23 21 20 43 43 H 1.08998 * 109.46848 * 60.00277 * 26 25 24 44 44 H 1.09000 * 109.47018 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.46792 * 299.99909 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8370 1.6364 8 6 2.5186 4.0667 3.6081 9 7 1.9591 3.4660 4.6357 10 14 2.8718 5.8997 3.6767 11 1 2.1360 6.5868 2.5850 12 1 2.4300 6.4403 4.9873 13 1 4.3297 6.1295 3.5120 14 6 4.2498 0.8661 0.9824 15 8 5.0200 0.8887 1.9189 16 6 4.6970 0.3173 -0.3481 17 8 6.0570 -0.1110 -0.2538 18 6 6.6184 -0.6352 -1.3760 19 6 5.8762 -0.7354 -2.5419 20 6 6.4470 -1.2730 -3.6805 21 6 7.7612 -1.7017 -3.6623 22 6 8.3804 -2.2811 -4.9081 23 6 8.5072 -1.6046 -2.5024 24 6 7.9395 -1.0716 -1.3563 25 8 8.6718 -0.9758 -0.2143 26 6 10.0211 -1.4436 -0.2677 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6212 1.4025 -0.9314 32 1 1.4889 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7296 3.9748 5.4289 35 1 4.6121 1.0937 -1.1084 36 1 4.0678 -0.5296 -0.6218 37 1 4.8505 -0.3978 -2.5598 38 1 5.8663 -1.3543 -4.5874 39 1 8.2161 -3.3586 -4.9282 40 1 7.9218 -1.8272 -5.7866 41 1 9.4511 -2.0768 -4.9105 42 1 9.5325 -1.9437 -2.4899 43 1 10.5727 -0.8768 -1.0178 44 1 10.4910 -1.3094 0.7066 45 1 10.0289 -2.5008 -0.5328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359437902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:18 Heat of formation + Delta-G solvation = -79.698918 kcal Electronic energy + Delta-G solvation = -26487.948265 eV Core-core repulsion = 22664.427968 eV Total energy + Delta-G solvation = -3823.520298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69423 -40.78787 -39.28107 -38.14290 -37.25331 -35.14310 -33.71047 -32.89757 -31.42147 -30.64480 -28.90916 -28.33017 -26.92863 -26.75953 -24.82061 -23.20690 -22.36854 -21.20850 -20.11082 -19.62091 -18.65057 -18.12384 -18.04248 -17.42263 -17.31382 -17.02857 -16.58418 -16.23517 -15.86265 -15.60656 -15.42709 -15.16216 -14.86217 -14.47809 -14.42972 -14.23126 -14.15790 -13.72798 -13.37453 -13.18204 -13.02803 -12.99727 -12.88113 -12.71738 -12.59655 -12.29038 -12.23587 -12.19675 -12.07922 -12.01132 -11.71434 -11.64852 -10.70060 -10.65518 -10.32483 -9.66587 -9.55862 -8.73456 -8.23873 -6.38689 0.30096 0.43904 1.27268 1.35695 1.40693 1.47476 1.63543 1.78319 2.36802 2.40166 2.71383 2.72608 3.06153 3.48485 3.81683 3.84179 3.97218 4.02190 4.10898 4.11088 4.24996 4.25851 4.36211 4.36866 4.41505 4.44060 4.65721 4.68448 4.83480 4.85476 4.92065 4.96352 5.05849 5.11912 5.19406 5.29318 5.30630 5.47194 5.63328 5.71501 5.73421 5.81395 5.92889 6.03365 6.08324 6.56995 6.66919 6.70627 7.22927 7.37484 8.83599 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003137 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.436158 B = 8923.228000 C =10111.239719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.591 5.591 5 C 0.266 3.734 6 C -0.546 4.546 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.257 1.257 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.056 3.944 17 O -0.319 6.319 18 C 0.059 3.941 19 C -0.169 4.169 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.107 4.107 23 C -0.174 4.174 24 C 0.076 3.924 25 O -0.343 6.343 26 C 0.019 3.981 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.029 0.971 33 H -0.006 1.006 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -12.679 -23.653 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.145 3.855 6 C -0.585 4.585 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.181 1.181 12 H -0.203 1.203 13 H -0.206 1.206 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.022 4.022 17 O -0.233 6.233 18 C 0.014 3.986 19 C -0.187 4.187 20 C -0.135 4.135 21 C -0.088 4.088 22 C -0.164 4.164 23 C -0.193 4.193 24 C 0.031 3.969 25 O -0.258 6.258 26 C -0.075 4.075 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.047 0.953 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.173 0.827 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.055 -12.523 -22.602 27.066 hybrid contribution 0.139 0.899 0.923 1.296 sum 8.195 -11.624 -21.679 25.928 Atomic orbital electron populations 1.24070 0.95475 1.02991 0.97661 1.23318 0.96909 0.98115 1.02449 1.20966 0.92862 0.96837 0.88713 1.48124 1.10826 1.59600 1.13699 1.18737 0.94099 0.92721 0.79980 1.21687 1.40826 0.94332 1.01631 0.92676 1.25865 0.94571 1.03873 0.94773 1.70048 1.42660 1.38246 1.05779 0.85470 0.78412 0.78905 0.78046 1.18092 1.20254 1.20594 1.20775 0.82197 0.78461 0.90135 1.90687 1.54039 1.57540 1.44016 1.22597 0.82553 1.01905 0.95121 1.86230 1.27061 1.76555 1.33476 1.18831 0.91660 1.00738 0.87410 1.21396 1.01313 1.04447 0.91575 1.21137 0.95012 0.98959 0.98346 1.20069 0.94147 0.98845 0.95763 1.20799 1.01042 1.01244 0.93269 1.21193 1.02015 1.04718 0.91344 1.18710 0.89587 1.01052 0.87601 1.86226 1.26784 1.80328 1.32465 1.23316 0.79259 0.99983 1.04925 0.86516 0.88128 0.86752 0.89745 0.87186 0.95306 0.98796 0.92343 0.86606 0.86259 0.82579 0.82406 0.90099 0.90003 0.90812 0.82740 0.91255 0.87581 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 14.32 67.78 0.97 -2.74 16 2 C -0.19 -4.82 9.74 25.64 0.25 -4.57 16 3 C 0.13 3.87 5.65 85.63 0.48 4.35 16 4 N -0.59 -25.75 2.44 -830.52 -2.03 -27.78 16 5 C 0.27 14.73 5.16 85.63 0.44 15.18 16 6 C -0.55 -32.20 9.39 25.60 0.24 -31.96 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.49 5.46 84.65 0.46 0.95 16 9 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 10 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 C 0.50 22.55 7.75 87.66 0.68 23.23 16 15 O -0.58 -34.06 16.08 16.01 0.26 -33.80 16 16 C 0.06 1.80 3.77 71.24 0.27 2.07 16 17 O -0.32 -12.35 9.45 -66.98 -0.63 -12.98 16 18 C 0.06 1.80 6.70 22.57 0.15 1.96 16 19 C -0.17 -3.67 9.04 22.35 0.20 -3.47 16 20 C -0.12 -1.96 9.69 22.27 0.22 -1.75 16 21 C -0.09 -1.47 5.88 -19.86 -0.12 -1.59 16 22 C -0.11 -1.00 10.01 71.23 0.71 -0.28 16 23 C -0.17 -3.59 8.69 22.35 0.19 -3.39 16 24 C 0.08 2.22 6.70 22.57 0.15 2.37 16 25 O -0.34 -11.09 10.28 -79.63 -0.82 -11.91 16 26 C 0.02 0.38 9.81 113.37 1.11 1.49 16 27 H 0.12 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 29 H 0.11 2.70 7.83 -2.91 -0.02 2.68 16 30 H 0.08 2.67 7.72 -2.39 -0.02 2.66 16 31 H 0.11 2.45 6.44 -2.39 -0.02 2.44 16 32 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 33 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 35 H 0.12 2.92 6.92 -2.39 -0.02 2.91 16 36 H 0.12 2.90 7.29 -2.39 -0.02 2.88 16 37 H 0.16 2.55 6.30 -2.91 -0.02 2.53 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.08 0.55 8.09 -2.39 -0.02 0.54 16 41 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 42 H 0.16 2.31 6.30 -2.91 -0.02 2.29 16 43 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 Total: -1.00 -86.47 382.31 6.49 -79.98 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.98 Total: 13.78 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.42 Total: 1.84 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.74 Total: -84.70 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -1.19 Total: -58.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -86.47 6.49 -79.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.282 kcal (2) G-P(sol) polarization free energy of solvation -86.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds