Wall clock time and date at job start Tue Mar 31 2020 13:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46691 * 2 1 4 4 C 1.53002 * 109.46588 * 182.16468 * 3 2 1 5 5 C 1.53004 * 110.78044 * 302.12303 * 4 3 2 6 6 O 1.42900 * 109.46890 * 303.80070 * 5 4 3 7 7 C 1.55405 * 110.69347 * 178.73692 * 4 3 2 8 8 C 1.54914 * 101.66171 * 277.04743 * 7 4 3 9 9 N 1.47417 * 104.83396 * 323.07221 * 8 7 4 10 10 S 1.65603 * 125.64983 * 204.16764 * 9 8 7 11 11 O 1.42101 * 104.27663 * 26.02907 * 10 9 8 12 12 O 1.42103 * 104.27753 * 153.88681 * 10 9 8 13 13 C 1.81395 * 104.44829 * 269.95839 * 10 9 8 14 14 C 1.52999 * 109.47405 * 180.02562 * 13 10 9 15 15 C 1.52995 * 109.47468 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47271 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99923 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00328 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00445 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47441 * 120.00025 * 20 18 16 23 23 H 1.48506 * 109.47428 * 240.00575 * 20 18 16 24 24 C 1.47024 * 108.70408 * 24.13335 * 9 8 7 25 25 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47241 * 299.99705 * 1 2 3 27 27 H 1.08999 * 109.47801 * 59.99759 * 1 2 3 28 28 H 1.09005 * 109.46500 * 240.00758 * 2 1 3 29 29 H 1.08991 * 109.47187 * 120.00241 * 2 1 3 30 30 H 1.08994 * 109.47095 * 62.16390 * 3 2 1 31 31 H 1.09004 * 109.47292 * 302.16045 * 3 2 1 32 32 H 1.09004 * 109.46880 * 63.79458 * 5 4 3 33 33 H 1.09000 * 109.47091 * 183.79600 * 5 4 3 34 34 H 0.96705 * 113.99509 * 179.97438 * 6 5 4 35 35 H 1.08993 * 110.89612 * 158.97443 * 7 4 3 36 36 H 1.09004 * 111.06701 * 35.19070 * 7 4 3 37 37 H 1.09006 * 110.36276 * 204.23427 * 8 7 4 38 38 H 1.09000 * 110.46292 * 81.96388 * 8 7 4 39 39 H 1.08999 * 109.47455 * 300.00286 * 13 10 9 40 40 H 1.09008 * 109.47468 * 59.99609 * 13 10 9 41 41 H 1.09003 * 109.46918 * 300.00033 * 14 13 10 42 42 H 1.08999 * 109.47245 * 59.99448 * 14 13 10 43 43 H 1.09003 * 109.47029 * 299.99905 * 15 14 13 44 44 H 1.08997 * 109.47176 * 60.00227 * 15 14 13 45 45 H 0.97009 * 119.99702 * 179.97438 * 19 18 16 46 46 H 1.08992 * 109.88464 * 118.35670 * 24 9 8 47 47 H 1.09004 * 109.88612 * 239.37074 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5690 1.4429 -0.0545 5 6 4.1544 0.6672 1.1272 6 8 3.6658 1.2219 2.3502 7 6 4.1170 2.8967 -0.0878 8 6 3.9997 3.2412 -1.5936 9 7 4.3340 1.9881 -2.2945 10 16 4.9141 1.8726 -3.8413 11 8 5.5683 3.1143 -4.0638 12 8 5.6387 0.6503 -3.8534 13 6 3.4282 1.7420 -4.8734 14 6 3.8366 1.6275 -6.3434 15 6 2.5833 1.5180 -7.2140 16 6 2.9857 1.4058 -8.6620 17 1 4.0308 1.4116 -8.9340 18 6 2.0196 1.2948 -9.6394 19 7 0.7469 1.2872 -9.3080 20 14 2.5183 1.1550 -11.4341 21 1 3.9992 1.1871 -11.5403 22 1 2.0103 -0.1245 -11.9909 23 1 1.9422 2.2908 -12.1979 24 6 4.0678 0.8579 -1.3926 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.7086 1.9450 0.9087 31 1 1.6453 1.9675 -0.8700 32 1 3.8566 -0.3791 1.0584 33 1 5.2419 0.7376 1.1051 34 1 3.9964 0.7780 3.1432 35 1 5.1558 2.9282 0.2405 36 1 3.4987 3.5624 0.5146 37 1 4.7086 4.0254 -1.8596 38 1 2.9833 3.5517 -1.8354 39 1 2.8615 0.8570 -4.5842 40 1 2.8107 2.6297 -4.7355 41 1 4.4035 2.5123 -6.6330 42 1 4.4538 0.7396 -6.4810 43 1 2.0160 0.6333 -6.9246 44 1 1.9666 2.4061 -7.0765 45 1 0.0672 1.2094 -9.9958 46 1 3.3025 0.2123 -1.8232 47 1 4.9836 0.2895 -1.2302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377299462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:56 Heat of formation + Delta-G solvation = -148.518176 kcal Electronic energy + Delta-G solvation = -25900.351463 eV Core-core repulsion = 22209.290889 eV Total energy + Delta-G solvation = -3691.060573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.96732 -36.92101 -36.70938 -35.75504 -34.78712 -34.65530 -32.18662 -31.62307 -29.67692 -27.80685 -26.59912 -25.55729 -23.73077 -22.87508 -21.70234 -20.55152 -19.23924 -18.85641 -17.64390 -17.55733 -16.70329 -16.20756 -15.89300 -15.61568 -15.50857 -14.85157 -14.48664 -14.31564 -14.10221 -13.76542 -13.69849 -13.36472 -12.96943 -12.61969 -12.55881 -12.34465 -12.25288 -12.08900 -11.92079 -11.87305 -11.77538 -11.69143 -11.50290 -11.35042 -11.22196 -10.93965 -10.84193 -10.76821 -10.68793 -10.50146 -10.41141 -10.16725 -9.96007 -9.50438 -9.20897 -8.89713 -8.41553 -6.06187 -4.09191 0.40560 2.74403 3.29071 3.36575 3.41588 3.70189 3.99738 4.19549 4.23804 4.41680 4.42638 4.51397 4.78878 4.89420 4.97168 5.06013 5.08841 5.12000 5.14824 5.21963 5.24936 5.27038 5.30452 5.41749 5.53597 5.59089 5.67620 5.68982 5.76737 5.85248 5.87530 5.88268 5.98026 6.04948 6.12564 6.18346 6.21575 6.34403 6.44543 6.86715 7.26855 7.56717 7.66395 7.91973 8.32391 8.97258 9.55608 11.05063 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002989 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.154772 B = 9365.368443 C =10354.837821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.067 4.067 5 C 0.090 3.910 6 O -0.567 6.567 7 C -0.111 4.111 8 C 0.113 3.887 9 N -1.015 6.015 10 S 2.614 3.386 11 O -0.957 6.957 12 O -0.958 6.958 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.128 3.872 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.378 0.622 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -0.516 25.372 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.068 4.068 5 C 0.012 3.988 6 O -0.372 6.372 7 C -0.150 4.150 8 C -0.013 4.013 9 N -0.852 5.852 10 S 2.712 3.288 11 O -0.948 6.948 12 O -0.949 6.949 13 C -0.740 4.740 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.002 3.998 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.542 -0.124 24.571 24.826 hybrid contribution -0.338 -0.558 -0.728 0.977 sum 3.204 -0.682 23.843 24.067 Atomic orbital electron populations 1.21755 0.95740 1.01588 1.01860 1.21638 0.96082 0.96940 1.01944 1.21540 0.92294 0.97265 1.02737 1.21663 0.96655 0.95915 0.92613 1.22132 0.96735 0.96016 0.83942 1.86469 1.73919 1.61287 1.15514 1.22822 1.01786 0.95240 0.95173 1.22080 1.00910 0.86338 0.91922 1.58752 1.83664 1.12930 1.29895 1.05020 0.77046 0.74106 0.72639 1.93558 1.72227 1.44737 1.84257 1.93556 1.69259 1.46680 1.85387 1.30590 1.20075 1.11226 1.12085 1.21507 1.02746 1.01854 0.88431 1.19062 0.90738 0.97666 0.93280 1.21293 0.93142 1.50424 0.91512 0.92315 1.25022 0.94931 0.95144 0.99312 1.69973 0.99606 1.50495 1.33348 0.86500 0.78836 0.77667 0.84826 1.19594 1.20938 1.20926 1.21715 1.00693 0.88380 0.88984 0.92861 0.92870 0.92568 0.91826 0.91909 0.90738 0.91492 0.93039 0.93390 0.77565 0.90668 0.89635 0.89729 0.91416 0.85512 0.85443 0.91592 0.91602 0.96126 0.96117 0.92956 0.90903 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.01 5.34 -26.73 -0.14 -1.15 16 3 C -0.10 -0.83 4.01 -26.73 -0.11 -0.94 16 4 C -0.07 -0.56 0.44 -152.54 -0.07 -0.63 16 5 C 0.09 0.62 5.33 37.16 0.20 0.82 16 6 O -0.57 -3.82 12.84 -35.23 -0.45 -4.28 16 7 C -0.11 -0.95 5.91 -24.44 -0.14 -1.09 16 8 C 0.11 1.14 6.76 -2.53 -0.02 1.12 16 9 N -1.02 -12.13 3.62 -111.42 -0.40 -12.53 16 10 S 2.61 40.20 5.65 -107.50 -0.61 39.59 16 11 O -0.96 -17.23 17.28 -57.54 -0.99 -18.23 16 12 O -0.96 -17.19 17.60 -57.54 -1.01 -18.21 16 13 C -0.61 -9.63 6.18 37.16 0.23 -9.40 16 14 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 15 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.13 1.30 5.91 -3.06 -0.02 1.28 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 29 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 30 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 31 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 32 H 0.05 0.31 6.79 -51.93 -0.35 -0.04 16 33 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16 34 H 0.38 1.01 9.12 45.56 0.42 1.43 16 35 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 39 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 40 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.07 0.69 6.11 -51.93 -0.32 0.37 16 47 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -35.37 382.79 -9.91 -45.28 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.54 Total: -1.96 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -0.39 Total: -26.16 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.33 Total: -38.46 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.46 Total: -40.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 40.20 SS G_CDS: -0.61 Total: 39.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.37 -9.91 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377299462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.240 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds