Wall clock time and date at job start Tue Mar 31 2020 13:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46691 * 2 1 4 4 C 1.53002 * 109.46588 * 182.16468 * 3 2 1 5 5 C 1.53004 * 110.78044 * 302.12303 * 4 3 2 6 6 O 1.42900 * 109.46890 * 303.80070 * 5 4 3 7 7 C 1.55405 * 110.69347 * 178.73692 * 4 3 2 8 8 C 1.54914 * 101.66171 * 277.04743 * 7 4 3 9 9 N 1.47417 * 104.83396 * 323.07221 * 8 7 4 10 10 S 1.65603 * 125.64983 * 204.16764 * 9 8 7 11 11 O 1.42101 * 104.27663 * 26.02907 * 10 9 8 12 12 O 1.42103 * 104.27753 * 153.88681 * 10 9 8 13 13 C 1.81395 * 104.44829 * 269.95839 * 10 9 8 14 14 C 1.52999 * 109.47405 * 180.02562 * 13 10 9 15 15 C 1.52995 * 109.47468 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.47271 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99923 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00328 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00445 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47441 * 120.00025 * 20 18 16 23 23 H 1.48506 * 109.47428 * 240.00575 * 20 18 16 24 24 C 1.47024 * 108.70408 * 24.13335 * 9 8 7 25 25 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47241 * 299.99705 * 1 2 3 27 27 H 1.08999 * 109.47801 * 59.99759 * 1 2 3 28 28 H 1.09005 * 109.46500 * 240.00758 * 2 1 3 29 29 H 1.08991 * 109.47187 * 120.00241 * 2 1 3 30 30 H 1.08994 * 109.47095 * 62.16390 * 3 2 1 31 31 H 1.09004 * 109.47292 * 302.16045 * 3 2 1 32 32 H 1.09004 * 109.46880 * 63.79458 * 5 4 3 33 33 H 1.09000 * 109.47091 * 183.79600 * 5 4 3 34 34 H 0.96705 * 113.99509 * 179.97438 * 6 5 4 35 35 H 1.08993 * 110.89612 * 158.97443 * 7 4 3 36 36 H 1.09004 * 111.06701 * 35.19070 * 7 4 3 37 37 H 1.09006 * 110.36276 * 204.23427 * 8 7 4 38 38 H 1.09000 * 110.46292 * 81.96388 * 8 7 4 39 39 H 1.08999 * 109.47455 * 300.00286 * 13 10 9 40 40 H 1.09008 * 109.47468 * 59.99609 * 13 10 9 41 41 H 1.09003 * 109.46918 * 300.00033 * 14 13 10 42 42 H 1.08999 * 109.47245 * 59.99448 * 14 13 10 43 43 H 1.09003 * 109.47029 * 299.99905 * 15 14 13 44 44 H 1.08997 * 109.47176 * 60.00227 * 15 14 13 45 45 H 0.97009 * 119.99702 * 179.97438 * 19 18 16 46 46 H 1.08992 * 109.88464 * 118.35670 * 24 9 8 47 47 H 1.09004 * 109.88612 * 239.37074 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5690 1.4429 -0.0545 5 6 4.1544 0.6672 1.1272 6 8 3.6658 1.2219 2.3502 7 6 4.1170 2.8967 -0.0878 8 6 3.9997 3.2412 -1.5936 9 7 4.3340 1.9881 -2.2945 10 16 4.9141 1.8726 -3.8413 11 8 5.5683 3.1143 -4.0638 12 8 5.6387 0.6503 -3.8534 13 6 3.4282 1.7420 -4.8734 14 6 3.8366 1.6275 -6.3434 15 6 2.5833 1.5180 -7.2140 16 6 2.9857 1.4058 -8.6620 17 1 4.0308 1.4116 -8.9340 18 6 2.0196 1.2948 -9.6394 19 7 0.7469 1.2872 -9.3080 20 14 2.5183 1.1550 -11.4341 21 1 3.9992 1.1871 -11.5403 22 1 2.0103 -0.1245 -11.9909 23 1 1.9422 2.2908 -12.1979 24 6 4.0678 0.8579 -1.3926 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.7086 1.9450 0.9087 31 1 1.6453 1.9675 -0.8700 32 1 3.8566 -0.3791 1.0584 33 1 5.2419 0.7376 1.1051 34 1 3.9964 0.7780 3.1432 35 1 5.1558 2.9282 0.2405 36 1 3.4987 3.5624 0.5146 37 1 4.7086 4.0254 -1.8596 38 1 2.9833 3.5517 -1.8354 39 1 2.8615 0.8570 -4.5842 40 1 2.8107 2.6297 -4.7355 41 1 4.4035 2.5123 -6.6330 42 1 4.4538 0.7396 -6.4810 43 1 2.0160 0.6333 -6.9246 44 1 1.9666 2.4061 -7.0765 45 1 0.0672 1.2094 -9.9958 46 1 3.3025 0.2123 -1.8232 47 1 4.9836 0.2895 -1.2302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377299462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:54 Heat of formation + Delta-G solvation = -174.520989 kcal Electronic energy + Delta-G solvation = -25901.479029 eV Core-core repulsion = 22209.290889 eV Total energy + Delta-G solvation = -3692.188140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.67370 -38.26574 -37.30485 -37.09792 -36.49515 -35.43525 -34.18525 -32.36006 -30.43066 -29.67721 -27.22585 -26.28153 -25.59688 -23.71512 -22.44797 -22.24651 -20.03474 -19.88949 -18.78389 -18.53458 -18.13327 -17.39777 -17.16209 -16.64665 -16.41558 -16.28086 -15.86313 -15.45435 -14.94857 -14.54695 -14.51002 -14.41124 -14.13765 -14.07938 -13.59096 -13.56368 -13.33812 -13.23964 -13.18251 -13.13429 -13.01392 -12.79438 -12.70297 -12.63695 -12.42828 -12.31057 -12.16022 -12.02090 -11.78764 -11.40836 -11.38808 -11.29320 -11.14111 -11.10275 -10.67733 -10.59683 -9.94508 -8.24284 -6.35459 -0.84725 1.38758 1.39349 1.52749 1.63020 2.38642 2.75052 2.94360 3.09265 3.29986 3.49725 3.66855 3.73036 3.87372 3.92797 4.15748 4.24669 4.34876 4.36294 4.40937 4.45165 4.53760 4.59100 4.60407 4.63113 4.70182 4.84920 4.90425 4.93349 5.01166 5.01947 5.02707 5.11837 5.14350 5.20965 5.23311 5.37714 5.43171 5.45754 5.49770 5.55926 5.60069 5.77393 6.17646 6.80104 6.99118 7.34035 8.87441 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002989 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.154772 B = 9365.368443 C =10354.837821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.096 4.096 4 C -0.063 4.063 5 C 0.092 3.908 6 O -0.579 6.579 7 C -0.106 4.106 8 C 0.103 3.897 9 N -1.011 6.011 10 S 2.641 3.359 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.608 4.608 14 C -0.106 4.106 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.118 3.882 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.396 0.604 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.080 0.920 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -0.683 26.430 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.065 4.065 5 C 0.014 3.986 6 O -0.387 6.387 7 C -0.145 4.145 8 C -0.021 4.021 9 N -0.850 5.850 10 S 2.739 3.261 11 O -0.975 6.975 12 O -0.974 6.974 13 C -0.739 4.739 14 C -0.145 4.145 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.817 -0.297 25.637 25.922 hybrid contribution -0.461 -0.500 -0.953 1.171 sum 3.355 -0.797 24.685 24.924 Atomic orbital electron populations 1.21758 0.95878 1.01710 1.01653 1.21638 0.95955 0.96782 1.02168 1.21490 0.92120 0.97375 1.02397 1.21641 0.96725 0.95824 0.92294 1.22061 0.96801 0.96141 0.83588 1.86417 1.74234 1.61904 1.16172 1.22812 1.02158 0.95579 0.93920 1.22331 1.01595 0.85315 0.92863 1.58423 1.83443 1.14523 1.28652 1.03932 0.76319 0.72823 0.73031 1.93519 1.72982 1.45797 1.85156 1.93517 1.70064 1.47725 1.86139 1.30550 1.21244 1.12897 1.09189 1.21321 1.00457 1.01990 0.90776 1.18951 0.92430 0.95856 0.93377 1.21759 0.93419 1.50564 0.93264 0.92177 1.25941 0.94885 0.94607 1.04137 1.70082 1.00690 1.51173 1.35005 0.85418 0.78818 0.77956 0.79001 1.18788 1.20157 1.20168 1.21963 1.01163 0.87970 0.89641 0.92607 0.92452 0.93400 0.92161 0.91095 0.90785 0.92078 0.92089 0.93035 0.75495 0.90583 0.88477 0.90286 0.89966 0.83905 0.83880 0.91566 0.91518 0.97877 0.97922 0.92606 0.90173 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -1.79 5.34 30.60 0.16 -1.63 16 3 C -0.10 -1.40 4.01 30.60 0.12 -1.28 16 4 C -0.06 -0.93 0.44 -50.90 -0.02 -0.95 16 5 C 0.09 1.06 5.33 71.98 0.38 1.45 16 6 O -0.58 -6.35 12.84 -148.98 -1.91 -8.26 16 7 C -0.11 -1.60 5.91 32.08 0.19 -1.41 16 8 C 0.10 1.93 6.76 86.86 0.59 2.52 16 9 N -1.01 -22.89 3.62 -506.43 -1.83 -24.73 16 10 S 2.64 79.56 5.65 -56.49 -0.32 79.24 16 11 O -0.98 -35.03 17.28 -127.65 -2.21 -37.24 16 12 O -0.98 -34.78 17.60 -127.65 -2.25 -37.02 16 13 C -0.61 -18.95 6.18 71.98 0.44 -18.50 16 14 C -0.11 -4.40 5.16 30.59 0.16 -4.25 16 15 C 0.03 1.68 4.97 29.85 0.15 1.83 16 16 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.00 0.14 5.46 84.65 0.46 0.61 16 19 N -0.93 -55.96 13.29 21.44 0.28 -55.68 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.12 2.20 5.91 86.73 0.51 2.71 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.88 6.37 -2.38 -0.02 0.87 16 29 H 0.07 0.88 6.71 -2.39 -0.02 0.87 16 30 H 0.07 1.11 7.75 -2.39 -0.02 1.09 16 31 H 0.06 0.96 7.56 -2.39 -0.02 0.94 16 32 H 0.06 0.59 6.79 -2.38 -0.02 0.57 16 33 H 0.05 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.40 1.12 9.12 -74.05 -0.68 0.44 16 35 H 0.08 1.15 8.01 -2.39 -0.02 1.13 16 36 H 0.10 1.27 8.04 -2.38 -0.02 1.25 16 37 H 0.08 1.58 7.67 -2.38 -0.02 1.56 16 38 H 0.08 1.30 7.80 -2.39 -0.02 1.28 16 39 H 0.14 3.96 8.14 -2.39 -0.02 3.94 16 40 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 41 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16 42 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 46 H 0.08 1.38 6.11 -2.39 -0.01 1.37 16 47 H 0.07 1.37 7.82 -2.38 -0.02 1.35 16 Total: -1.00 -75.08 382.79 -1.85 -76.92 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.27 Total: 12.18 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 4.10 Total: -51.85 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.55 Total: -80.40 kcal Atomic # 8 Polarization: -76.16 SS G_CDS: -6.37 Total: -82.52 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 79.56 SS G_CDS: -0.32 Total: 79.24 kcal Total: -75.08 -1.85 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377299462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.600 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds