Wall clock time and date at job start Tue Mar 31 2020 12:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46909 * 2 1 4 4 C 1.50701 * 109.46855 * 240.00676 * 2 1 3 5 5 H 1.07999 * 119.99562 * 240.82859 * 4 2 1 6 6 C 1.37875 * 120.00281 * 60.83229 * 4 2 1 7 7 N 1.31508 * 119.99901 * 194.57786 * 6 4 2 8 8 Si 1.86806 * 119.99924 * 14.58031 * 6 4 2 9 9 H 1.48496 * 109.47171 * 84.45323 * 8 6 4 10 10 H 1.48502 * 109.46810 * 204.45700 * 8 6 4 11 11 H 1.48505 * 109.46674 * 324.45194 * 8 6 4 12 12 C 1.52991 * 109.47556 * 120.00351 * 2 1 3 13 13 S 1.81400 * 109.47292 * 300.00087 * 12 2 1 14 14 O 1.42104 * 110.54310 * 68.37115 * 13 12 2 15 15 O 1.42103 * 110.54188 * 291.62633 * 13 12 2 16 16 N 1.65602 * 104.45317 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99867 * 64.99811 * 16 13 12 18 18 H 1.08997 * 109.61696 * 335.22269 * 17 16 13 19 19 C 1.53179 * 109.54126 * 95.44807 * 17 16 13 20 20 C 1.53091 * 109.16094 * 176.84888 * 19 17 16 21 21 O 1.42903 * 109.42285 * 302.39215 * 20 19 17 22 22 C 1.42904 * 114.09687 * 61.14385 * 21 20 19 23 23 C 1.53001 * 109.48251 * 178.87257 * 22 21 20 24 24 C 1.52996 * 109.48155 * 58.84798 * 22 21 20 25 25 C 1.53097 * 109.42386 * 298.85951 * 22 21 20 26 26 H 1.09005 * 109.46915 * 310.22342 * 1 2 3 27 27 H 1.08994 * 109.47363 * 70.22804 * 1 2 3 28 28 H 1.09000 * 109.46703 * 190.23159 * 1 2 3 29 29 H 1.08996 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47341 * 300.00581 * 3 2 1 31 31 H 1.09003 * 109.46384 * 60.00493 * 3 2 1 32 32 H 0.97008 * 120.00062 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47587 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.47235 * 60.00138 * 12 2 1 35 35 H 0.96998 * 119.99702 * 244.99796 * 16 13 12 36 36 H 1.09006 * 109.52113 * 296.74830 * 19 17 16 37 37 H 1.09002 * 109.52509 * 56.93886 * 19 17 16 38 38 H 1.08990 * 109.48491 * 62.37243 * 20 19 17 39 39 H 1.09002 * 109.48194 * 182.39514 * 20 19 17 40 40 H 1.09004 * 109.46897 * 299.97859 * 23 22 21 41 41 H 1.08997 * 109.47058 * 59.97326 * 23 22 21 42 42 H 1.08993 * 109.47169 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47314 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.47013 * 300.02659 * 24 22 21 45 45 H 1.09000 * 109.47164 * 60.02523 * 24 22 21 46 46 H 1.08994 * 109.52177 * 177.51163 * 25 22 21 47 47 H 1.09000 * 109.52035 * 297.69772 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6421 -1.5961 -1.1316 6 6 1.7134 -0.2292 -2.4827 7 7 1.8967 -0.9844 -3.5436 8 14 1.0210 1.4954 -2.6722 9 1 2.1368 2.4739 -2.7239 10 1 0.2325 1.5769 -3.9279 11 1 0.1432 1.8062 -1.5154 12 6 2.0401 -0.7213 1.2491 13 16 1.4355 0.1337 2.7303 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0544 -0.7402 3.9935 17 6 3.5029 -0.7964 4.2052 18 1 4.0179 -0.6110 3.2626 19 6 3.9125 0.2654 5.2305 20 6 5.4141 0.1471 5.5039 21 8 5.7106 -1.1723 5.9659 22 6 5.3923 -2.2037 5.0294 23 6 5.7761 -3.5631 5.6174 24 6 6.1685 -1.9717 3.7315 25 6 3.8897 -2.1799 4.7369 26 1 -0.3633 0.6637 0.7847 27 1 -0.3634 0.3476 -0.9670 28 1 -0.3633 -1.0113 0.1825 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6720 -0.6461 -4.4245 33 1 3.1301 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 1.4578 -1.2148 4.5932 36 1 3.6911 1.2571 4.8361 37 1 3.3601 0.1092 6.1571 38 1 5.9674 0.3433 4.5855 39 1 5.7034 0.8723 6.2645 40 1 6.8458 -3.5797 5.8260 41 1 5.2230 -3.7282 6.5420 42 1 5.5328 -4.3496 4.9032 43 1 5.9252 -2.7583 3.0171 44 1 5.8949 -1.0032 3.3127 45 1 7.2382 -1.9884 3.9400 46 1 3.6520 -2.9369 3.9896 47 1 3.3369 -2.3854 5.6535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:20 Heat of formation + Delta-G solvation = -113.819930 kcal Electronic energy + Delta-G solvation = -27320.856413 eV Core-core repulsion = 23631.300469 eV Total energy + Delta-G solvation = -3689.555944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28911 -36.77276 -36.75879 -35.84505 -35.46583 -33.79804 -31.98348 -31.03001 -28.04090 -27.57576 -27.43631 -26.41392 -25.05060 -24.01557 -22.02361 -20.15110 -19.45082 -18.80570 -17.59069 -16.79930 -16.36558 -16.18321 -15.64690 -15.55690 -15.21943 -14.92443 -14.75171 -14.42589 -13.94159 -13.46878 -13.27464 -13.17953 -12.92886 -12.69187 -12.49946 -12.40661 -12.32626 -12.14204 -11.89364 -11.70590 -11.67705 -11.59284 -11.54594 -11.38798 -11.30344 -11.12346 -11.02119 -10.79902 -10.25460 -10.19128 -10.09288 -10.04987 -9.68770 -9.46650 -9.04115 -8.77681 -8.50434 -6.22480 -4.20008 0.65720 2.97977 3.22870 3.32140 3.36611 3.55597 4.08780 4.31302 4.37126 4.50234 4.55114 4.63316 4.77693 4.83092 4.90966 5.05847 5.07921 5.19452 5.29983 5.35719 5.43054 5.46154 5.48315 5.53346 5.58519 5.66405 5.72402 5.82747 5.93734 5.96031 6.00429 6.05506 6.13529 6.19904 6.28194 6.40431 6.45706 6.66460 6.83214 6.99509 7.08647 7.09751 7.27730 7.59180 8.35286 8.79857 9.41534 10.89983 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.004204 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.983664 B = 6658.540223 C = 7250.867454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.055 3.945 3 C -0.181 4.181 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.246 1.246 12 C -0.575 4.575 13 S 2.589 3.411 14 O -0.964 6.964 15 O -0.962 6.962 16 N -1.122 6.122 17 C 0.152 3.848 18 H 0.087 0.913 19 C -0.174 4.174 20 C 0.059 3.941 21 O -0.374 6.374 22 C 0.113 3.887 23 C -0.137 4.137 24 C -0.187 4.187 25 C -0.150 4.150 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.413 0.587 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -2.439 17.927 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.052 3.948 3 C -0.238 4.238 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.708 4.708 13 S 2.686 3.314 14 O -0.954 6.954 15 O -0.952 6.952 16 N -0.878 5.878 17 C 0.044 3.956 18 H 0.105 0.895 19 C -0.214 4.214 20 C -0.018 4.018 21 O -0.294 6.294 22 C 0.073 3.927 23 C -0.194 4.194 24 C -0.245 4.245 25 C -0.189 4.189 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.246 0.754 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.237 -1.631 17.897 19.022 hybrid contribution -0.324 0.264 -0.642 0.766 sum 5.913 -1.367 17.255 18.291 Atomic orbital electron populations 1.22678 0.97004 1.01334 1.01763 1.18229 0.92527 0.91711 0.92354 1.22818 1.02301 0.97864 1.00829 1.20635 1.33980 1.12575 0.87505 0.90419 1.24957 0.94524 0.97272 0.95790 1.69932 1.47832 1.35771 0.98917 0.87449 0.79823 0.85694 0.76550 1.20795 1.22879 1.17200 1.30386 1.11616 1.13150 1.15666 1.05724 0.74466 0.75400 0.75796 1.93572 1.29392 1.86656 1.85774 1.93542 1.78067 1.38125 1.85489 1.55884 1.13749 1.70966 1.47164 1.20794 0.80158 0.95374 0.99245 0.89468 1.22774 0.97143 1.01061 1.00396 1.22602 0.94217 0.84438 1.00569 1.87957 1.84827 1.14480 1.42116 1.21466 0.92688 0.89052 0.89462 1.21753 1.02385 0.93806 1.01478 1.22542 1.01189 1.03218 0.97513 1.22559 0.96561 0.97085 1.02716 0.94473 0.91417 0.92342 0.91834 0.92995 0.93160 0.92394 0.85966 0.85411 0.75408 0.88981 0.90584 0.92413 0.88552 0.91700 0.91838 0.90906 0.90879 0.91596 0.91495 0.89803 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 6.95 37.16 0.26 -3.55 16 2 C 0.05 1.23 0.52 -155.66 -0.08 1.15 16 3 C -0.18 -3.99 7.22 37.16 0.27 -3.73 16 4 C -0.51 -13.43 8.62 -34.44 -0.30 -13.73 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.16 5.31 -17.82 -0.09 2.06 16 7 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 8 Si 0.87 21.32 22.79 -169.99 -3.87 17.44 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.64 4.67 56.52 0.26 -5.37 16 12 C -0.58 -10.21 4.88 37.15 0.18 -10.03 16 13 S 2.59 43.19 4.42 -107.50 -0.48 42.71 16 14 O -0.96 -18.53 15.93 -57.54 -0.92 -19.45 16 15 O -0.96 -17.94 14.84 -57.54 -0.85 -18.79 16 16 N -1.12 -13.75 5.37 -4.74 -0.03 -13.77 16 17 C 0.15 1.69 2.33 -67.75 -0.16 1.53 16 18 H 0.09 0.97 5.64 -51.93 -0.29 0.68 16 19 C -0.17 -1.89 5.75 -26.59 -0.15 -2.05 16 20 C 0.06 0.57 6.52 37.20 0.24 0.82 16 21 O -0.37 -3.98 10.24 -35.23 -0.36 -4.34 16 22 C 0.11 1.05 1.11 -90.57 -0.10 0.95 16 23 C -0.14 -1.05 8.85 37.16 0.33 -0.72 16 24 C -0.19 -1.69 7.93 37.16 0.29 -1.39 16 25 C -0.15 -1.39 4.46 -26.59 -0.12 -1.51 16 26 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 27 H 0.07 1.56 4.32 -51.93 -0.22 1.33 16 28 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 31 H 0.05 1.04 5.46 -51.93 -0.28 0.75 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 1.93 7.45 -51.92 -0.39 1.54 16 34 H 0.13 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.41 4.24 8.80 -34.47 -0.30 3.94 16 36 H 0.09 1.12 7.54 -51.93 -0.39 0.72 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.62 4.98 -51.93 -0.26 0.36 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -32.62 349.85 -7.56 -40.18 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.68 Total: 6.31 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 0.57 Total: -30.20 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.75 Total: -39.14 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.13 Total: -42.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -3.87 Total: 17.44 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.48 Total: 42.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.62 -7.56 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.637 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds