Wall clock time and date at job start Tue Mar 31 2020 12:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46909 * 2 1 4 4 C 1.50701 * 109.46855 * 240.00676 * 2 1 3 5 5 H 1.07999 * 119.99562 * 240.82859 * 4 2 1 6 6 C 1.37875 * 120.00281 * 60.83229 * 4 2 1 7 7 N 1.31508 * 119.99901 * 194.57786 * 6 4 2 8 8 Si 1.86806 * 119.99924 * 14.58031 * 6 4 2 9 9 H 1.48496 * 109.47171 * 84.45323 * 8 6 4 10 10 H 1.48502 * 109.46810 * 204.45700 * 8 6 4 11 11 H 1.48505 * 109.46674 * 324.45194 * 8 6 4 12 12 C 1.52991 * 109.47556 * 120.00351 * 2 1 3 13 13 S 1.81400 * 109.47292 * 300.00087 * 12 2 1 14 14 O 1.42104 * 110.54310 * 68.37115 * 13 12 2 15 15 O 1.42103 * 110.54188 * 291.62633 * 13 12 2 16 16 N 1.65602 * 104.45317 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99867 * 64.99811 * 16 13 12 18 18 H 1.08997 * 109.61696 * 335.22269 * 17 16 13 19 19 C 1.53179 * 109.54126 * 95.44807 * 17 16 13 20 20 C 1.53091 * 109.16094 * 176.84888 * 19 17 16 21 21 O 1.42903 * 109.42285 * 302.39215 * 20 19 17 22 22 C 1.42904 * 114.09687 * 61.14385 * 21 20 19 23 23 C 1.53001 * 109.48251 * 178.87257 * 22 21 20 24 24 C 1.52996 * 109.48155 * 58.84798 * 22 21 20 25 25 C 1.53097 * 109.42386 * 298.85951 * 22 21 20 26 26 H 1.09005 * 109.46915 * 310.22342 * 1 2 3 27 27 H 1.08994 * 109.47363 * 70.22804 * 1 2 3 28 28 H 1.09000 * 109.46703 * 190.23159 * 1 2 3 29 29 H 1.08996 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47341 * 300.00581 * 3 2 1 31 31 H 1.09003 * 109.46384 * 60.00493 * 3 2 1 32 32 H 0.97008 * 120.00062 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47587 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.47235 * 60.00138 * 12 2 1 35 35 H 0.96998 * 119.99702 * 244.99796 * 16 13 12 36 36 H 1.09006 * 109.52113 * 296.74830 * 19 17 16 37 37 H 1.09002 * 109.52509 * 56.93886 * 19 17 16 38 38 H 1.08990 * 109.48491 * 62.37243 * 20 19 17 39 39 H 1.09002 * 109.48194 * 182.39514 * 20 19 17 40 40 H 1.09004 * 109.46897 * 299.97859 * 23 22 21 41 41 H 1.08997 * 109.47058 * 59.97326 * 23 22 21 42 42 H 1.08993 * 109.47169 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47314 * 180.02562 * 24 22 21 44 44 H 1.09002 * 109.47013 * 300.02659 * 24 22 21 45 45 H 1.09000 * 109.47164 * 60.02523 * 24 22 21 46 46 H 1.08994 * 109.52177 * 177.51163 * 25 22 21 47 47 H 1.09000 * 109.52035 * 297.69772 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6421 -1.5961 -1.1316 6 6 1.7134 -0.2292 -2.4827 7 7 1.8967 -0.9844 -3.5436 8 14 1.0210 1.4954 -2.6722 9 1 2.1368 2.4739 -2.7239 10 1 0.2325 1.5769 -3.9279 11 1 0.1432 1.8062 -1.5154 12 6 2.0401 -0.7213 1.2491 13 16 1.4355 0.1337 2.7303 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0544 -0.7402 3.9935 17 6 3.5029 -0.7964 4.2052 18 1 4.0179 -0.6110 3.2626 19 6 3.9125 0.2654 5.2305 20 6 5.4141 0.1471 5.5039 21 8 5.7106 -1.1723 5.9659 22 6 5.3923 -2.2037 5.0294 23 6 5.7761 -3.5631 5.6174 24 6 6.1685 -1.9717 3.7315 25 6 3.8897 -2.1799 4.7369 26 1 -0.3633 0.6637 0.7847 27 1 -0.3634 0.3476 -0.9670 28 1 -0.3633 -1.0113 0.1825 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6720 -0.6461 -4.4245 33 1 3.1301 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 1.4578 -1.2148 4.5932 36 1 3.6911 1.2571 4.8361 37 1 3.3601 0.1092 6.1571 38 1 5.9674 0.3433 4.5855 39 1 5.7034 0.8723 6.2645 40 1 6.8458 -3.5797 5.8260 41 1 5.2230 -3.7282 6.5420 42 1 5.5328 -4.3496 4.9032 43 1 5.9252 -2.7583 3.0171 44 1 5.8949 -1.0032 3.3127 45 1 7.2382 -1.9884 3.9400 46 1 3.6520 -2.9369 3.9896 47 1 3.3369 -2.3854 5.6535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:19 Heat of formation + Delta-G solvation = -138.399853 kcal Electronic energy + Delta-G solvation = -27321.922279 eV Core-core repulsion = 23631.300469 eV Total energy + Delta-G solvation = -3690.621810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05246 -38.51438 -38.16177 -36.99561 -36.69367 -34.50249 -34.04881 -31.94796 -29.03781 -28.76667 -28.18442 -28.15172 -27.09060 -24.81413 -22.83719 -21.72623 -20.49968 -20.01958 -18.90059 -18.13928 -17.79303 -17.23508 -17.08945 -16.85756 -16.55302 -15.91002 -15.68037 -15.33229 -15.06091 -14.97469 -14.79029 -14.75822 -14.19429 -14.14591 -13.97432 -13.39966 -13.27430 -13.09701 -13.08070 -12.94921 -12.84386 -12.71067 -12.69291 -12.61877 -12.55975 -12.36718 -12.17559 -12.03146 -11.99225 -11.86372 -11.76242 -11.04502 -10.94749 -10.69309 -10.55849 -10.46151 -10.31086 -8.35276 -6.34495 -0.68580 1.29499 1.34948 1.42417 1.78747 2.29057 2.75841 2.85264 2.99275 3.25448 3.57521 3.71198 3.77900 3.85425 3.97556 4.01192 4.08459 4.15864 4.24384 4.32049 4.43987 4.48894 4.58663 4.63570 4.68198 4.72799 4.75586 4.79045 4.85530 4.89273 4.93794 4.94685 5.04483 5.12627 5.14225 5.18081 5.25083 5.36993 5.38187 5.42269 5.51588 5.62333 6.08586 6.25855 6.36092 6.68421 7.29987 8.80425 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.004204 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.983664 B = 6658.540223 C = 7250.867454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.045 3.955 3 C -0.187 4.187 4 C -0.502 4.502 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.915 3.085 9 H -0.275 1.275 10 H -0.306 1.306 11 H -0.223 1.223 12 C -0.584 4.584 13 S 2.613 3.387 14 O -0.988 6.988 15 O -0.980 6.980 16 N -1.105 6.105 17 C 0.142 3.858 18 H 0.087 0.913 19 C -0.174 4.174 20 C 0.058 3.942 21 O -0.385 6.385 22 C 0.109 3.891 23 C -0.136 4.136 24 C -0.190 4.190 25 C -0.147 4.147 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.266 0.734 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.425 0.575 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -2.294 19.951 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 C -0.243 4.243 4 C -0.541 4.541 5 H 0.069 0.931 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.235 1.235 11 H -0.147 1.147 12 C -0.716 4.716 13 S 2.709 3.291 14 O -0.978 6.978 15 O -0.970 6.970 16 N -0.865 5.865 17 C 0.035 3.965 18 H 0.105 0.895 19 C -0.213 4.213 20 C -0.019 4.019 21 O -0.305 6.305 22 C 0.069 3.931 23 C -0.193 4.193 24 C -0.247 4.247 25 C -0.186 4.186 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.410 -1.484 19.937 20.995 hybrid contribution -0.305 0.133 -1.183 1.229 sum 6.105 -1.351 18.754 19.769 Atomic orbital electron populations 1.22695 0.96910 1.02112 1.01559 1.18210 0.92691 0.92172 0.92701 1.22845 1.02990 0.97441 1.01051 1.20911 1.32410 1.11592 0.89138 0.93057 1.25641 0.95383 1.00350 0.95743 1.70049 1.50309 1.37561 0.99460 0.86748 0.79850 0.81999 0.76962 1.20225 1.23521 1.14699 1.30398 1.12908 1.13616 1.14635 1.04782 0.73576 0.75032 0.75715 1.93536 1.31117 1.86998 1.86151 1.93520 1.78285 1.39448 1.85741 1.55464 1.14659 1.70614 1.45740 1.21036 0.79021 0.96825 0.99618 0.89479 1.22752 0.98086 1.00126 1.00350 1.22663 0.93404 0.84597 1.01235 1.87953 1.84902 1.14896 1.42750 1.21610 0.92578 0.89456 0.89448 1.21771 1.02477 0.93203 1.01846 1.22574 1.01439 1.03090 0.97626 1.22566 0.96721 0.95988 1.03323 0.93199 0.92529 0.91707 0.91020 0.93893 0.91700 0.92507 0.84264 0.84124 0.73920 0.90358 0.90145 0.92177 0.87240 0.91638 0.91648 0.89656 0.90291 0.92222 0.91219 0.88758 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.55 6.95 71.98 0.50 -7.05 16 2 C 0.04 1.95 0.52 -52.93 -0.03 1.92 16 3 C -0.19 -7.86 7.22 71.98 0.52 -7.34 16 4 C -0.50 -26.50 8.62 25.60 0.22 -26.28 16 5 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 6 C 0.03 1.54 5.31 84.66 0.45 1.99 16 7 N -0.93 -56.15 13.96 21.45 0.30 -55.86 16 8 Si 0.91 43.48 22.79 68.60 1.56 45.05 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 10 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16 11 H -0.22 -9.67 4.67 99.48 0.46 -9.21 16 12 C -0.58 -19.64 4.88 71.98 0.35 -19.29 16 13 S 2.61 81.34 4.42 -56.49 -0.25 81.09 16 14 O -0.99 -35.82 15.93 -127.65 -2.03 -37.86 16 15 O -0.98 -34.42 14.84 -127.65 -1.89 -36.32 16 16 N -1.11 -24.32 5.37 -168.90 -0.91 -25.23 16 17 C 0.14 2.83 2.33 45.11 0.11 2.94 16 18 H 0.09 1.76 5.64 -2.39 -0.01 1.74 16 19 C -0.17 -3.43 5.75 30.68 0.18 -3.26 16 20 C 0.06 1.02 6.52 72.01 0.47 1.49 16 21 O -0.39 -7.38 10.24 -148.98 -1.53 -8.91 16 22 C 0.11 1.77 1.11 -10.76 -0.01 1.75 16 23 C -0.14 -1.76 8.85 71.98 0.64 -1.13 16 24 C -0.19 -3.06 7.93 71.98 0.57 -2.49 16 25 C -0.15 -2.33 4.46 30.69 0.14 -2.20 16 26 H 0.05 2.00 6.21 -2.38 -0.01 1.98 16 27 H 0.06 2.52 4.32 -2.39 -0.01 2.51 16 28 H 0.06 2.64 8.11 -2.39 -0.02 2.62 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.04 1.87 2.28 -2.39 -0.01 1.87 16 31 H 0.06 2.53 5.46 -2.39 -0.01 2.52 16 32 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 33 H 0.14 4.13 7.45 -2.39 -0.02 4.11 16 34 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 35 H 0.42 7.55 8.80 -96.75 -0.85 6.70 16 36 H 0.08 1.78 7.54 -2.38 -0.02 1.76 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.02 6.34 -2.39 -0.02 1.00 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.02 4.98 -2.39 -0.01 1.01 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.98 349.85 -0.77 -69.75 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.12 Total: 27.22 kcal Atomic # 6 Polarization: -63.03 SS G_CDS: 4.10 Total: -58.94 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -0.61 Total: -81.08 kcal Atomic # 8 Polarization: -77.63 SS G_CDS: -5.45 Total: -83.08 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.56 Total: 45.05 kcal Atomic # 16 Polarization: 81.34 SS G_CDS: -0.25 Total: 81.09 kcal Total: -68.98 -0.77 -69.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.650 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds