Wall clock time and date at job start Tue Mar 31 2020 12:15:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35990 * 116.99988 * 2 1
4 4 C 1.38562 * 120.07335 * 0.02837 * 3 2 1
5 5 C 1.38247 * 120.00001 * 179.97438 * 4 3 2
6 6 C 1.50697 * 119.92748 * 179.97438 * 5 4 3
7 7 C 1.38254 * 120.14109 * 0.02562 * 5 4 3
8 8 C 1.38238 * 120.15207 * 359.67570 * 7 5 4
9 9 C 1.38566 * 119.99583 * 0.60055 * 8 7 5
10 10 O 1.35992 * 120.07341 * 179.69557 * 9 8 7
11 11 C 1.42903 * 116.99968 * 359.73139 * 10 9 8
12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9
13 13 O 1.21285 * 119.99998 * 359.97438 * 12 11 10
14 14 N 1.34777 * 119.99855 * 179.97438 * 12 11 10
15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11
16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12
17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14
18 18 H 1.07999 * 119.99785 * 95.20816 * 17 16 15
19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15
20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16
21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16
22 22 H 1.48504 * 109.47025 * 89.99775 * 21 19 17
23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17
24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17
25 25 C 1.53001 * 117.49754 * 80.48183 * 16 15 14
26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14
27 27 H 1.08997 * 109.47594 * 59.99474 * 1 2 3
28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46976 * 299.99673 * 1 2 3
30 30 H 1.08003 * 120.00121 * 359.95102 * 4 3 2
31 31 H 1.09005 * 109.46799 * 90.00201 * 6 5 4
32 32 H 1.08999 * 109.47182 * 209.99973 * 6 5 4
33 33 H 1.09000 * 109.47410 * 330.00477 * 6 5 4
34 34 H 1.08007 * 119.92211 * 179.97438 * 7 5 4
35 35 H 1.07997 * 120.00376 * 180.32329 * 8 7 5
36 36 H 1.09003 * 109.47002 * 59.99911 * 11 10 9
37 37 H 1.09000 * 109.46519 * 299.99720 * 11 10 9
38 38 H 0.96999 * 119.99492 * 359.97438 * 14 12 11
39 39 H 1.09001 * 109.47302 * 64.79393 * 15 14 12
40 40 H 1.09005 * 109.46853 * 304.79585 * 15 14 12
41 41 H 0.97004 * 120.00173 * 185.00091 * 20 19 17
42 42 H 1.09003 * 117.49648 * 214.99946 * 25 16 15
43 43 H 1.08991 * 117.50066 * 0.03054 * 25 16 15
44 44 H 1.08996 * 117.49909 * 359.97438 * 26 16 15
45 45 H 1.09006 * 117.50020 * 144.97002 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3747 0.0006
5 6 1.9224 3.6057 0.0011
6 6 1.1017 4.8696 0.0012
7 6 3.3030 3.6797 0.0005
8 6 4.0603 2.5233 0.0062
9 6 3.4360 1.2863 -0.0001
10 8 4.1795 0.1476 -0.0009
11 6 5.6003 0.3006 -0.0009
12 6 6.2519 -1.0583 -0.0011
13 8 5.5669 -2.0593 -0.0007
14 7 7.5957 -1.1613 -0.0016
15 6 8.2291 -2.4823 -0.0024
16 6 9.7458 -2.3208 0.1177
17 6 10.4209 -1.6400 -1.0450
18 1 10.6172 -0.5786 -1.0094
19 6 10.7931 -2.3732 -2.1517
20 7 10.6416 -3.6796 -2.1564
21 14 11.5129 -1.5111 -3.6444
22 1 12.9895 -1.4338 -3.5072
23 1 11.1689 -2.2747 -4.8707
24 1 10.9524 -0.1394 -3.7419
25 6 10.3214 -2.0721 1.5133
26 6 10.5198 -3.4294 0.8337
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 0.2146 2.3196 0.0003
31 1 0.9035 5.1740 1.0289
32 1 1.6504 5.6591 -0.5122
33 1 0.1575 4.6898 -0.5129
34 1 3.7909 4.6433 0.0005
35 1 5.1386 2.5839 0.0110
36 1 5.9066 0.8498 0.8895
37 1 5.9064 0.8508 -0.8906
38 1 8.1434 -0.3608 -0.0023
39 1 7.9912 -2.9988 -0.9323
40 1 7.8576 -3.0638 0.8415
41 1 10.9695 -4.2032 -2.9042
42 1 11.1886 -1.4162 1.5905
43 1 9.6197 -2.0241 2.3459
44 1 9.9485 -4.2735 1.2197
45 1 11.5173 -3.6666 0.4636
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000431133275.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:49
Heat of formation + Delta-G solvation = -63.006659 kcal
Electronic energy + Delta-G solvation = -26035.980528 eV
Core-core repulsion = 22213.184061 eV
Total energy + Delta-G solvation = -3822.796467 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.73231 -39.31963 -38.17954 -37.29538 -36.58216 -33.36812 -32.13956 -31.98893
-30.52597 -29.01912 -27.83711 -26.32196 -25.82784 -24.89332 -22.49202 -21.59374
-21.18027 -19.89231 -19.34075 -18.61218 -17.22964 -17.16105 -16.39228 -16.28790
-15.87933 -15.64649 -15.13221 -14.72397 -14.68066 -14.42084 -14.21432 -14.11370
-13.84545 -13.66539 -13.24823 -12.90366 -12.58494 -12.43695 -12.35306 -12.06609
-11.80837 -11.61678 -11.41634 -11.29338 -11.20332 -11.02212 -10.97186 -10.83276
-10.55624 -10.25896 -9.63295 -9.32118 -9.08047 -8.87367 -8.52738 -8.32453
-8.14157 -7.84758 -6.10131 -4.20586 1.10042 1.26159 2.81321 3.06653
3.15329 3.23689 3.32315 3.32918 3.51836 4.01515 4.32674 4.52273
4.64667 4.78035 4.86644 4.95679 4.98209 5.07456 5.13277 5.16451
5.19234 5.20708 5.31337 5.33136 5.33744 5.39732 5.46286 5.66859
5.97155 5.99939 6.07635 6.31126 6.36570 6.44401 6.51447 6.52782
6.68058 6.82230 6.94956 7.10080 7.20573 7.36086 7.48203 7.52074
7.78033 8.18254 8.30271 8.76243 8.81466 9.46951 10.96964
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.017018 B = 0.002599 C = 0.002475
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.957825 B =10769.548631 C =11308.507785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.301 6.301
3 C 0.104 3.896
4 C -0.174 4.174
5 C -0.091 4.091
6 C -0.109 4.109
7 C -0.116 4.116
8 C -0.172 4.172
9 C 0.101 3.899
10 O -0.277 6.277
11 C 0.040 3.960
12 C 0.506 3.494
13 O -0.531 6.531
14 N -0.699 5.699
15 C 0.165 3.835
16 C 0.023 3.977
17 C -0.502 4.502
18 H 0.060 0.940
19 C 0.073 3.927
20 N -0.874 5.874
21 Si 0.891 3.109
22 H -0.281 1.281
23 H -0.286 1.286
24 H -0.273 1.273
25 C -0.211 4.211
26 C -0.141 4.141
27 H 0.053 0.947
28 H 0.100 0.900
29 H 0.053 0.947
30 H 0.133 0.867
31 H 0.068 0.932
32 H 0.066 0.934
33 H 0.063 0.937
34 H 0.126 0.874
35 H 0.138 0.862
36 H 0.089 0.911
37 H 0.091 0.909
38 H 0.402 0.598
39 H 0.069 0.931
40 H 0.042 0.958
41 H 0.262 0.738
42 H 0.078 0.922
43 H 0.065 0.935
44 H 0.064 0.936
45 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.059 15.329 4.989 23.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.214 6.214
3 C 0.058 3.942
4 C -0.193 4.193
5 C -0.091 4.091
6 C -0.165 4.165
7 C -0.135 4.135
8 C -0.191 4.191
9 C 0.055 3.945
10 O -0.189 6.189
11 C -0.039 4.039
12 C 0.289 3.711
13 O -0.408 6.408
14 N -0.350 5.350
15 C 0.042 3.958
16 C 0.022 3.978
17 C -0.540 4.540
18 H 0.078 0.922
19 C -0.131 4.131
20 N -0.509 5.509
21 Si 0.718 3.282
22 H -0.207 1.207
23 H -0.212 1.212
24 H -0.198 1.198
25 C -0.248 4.248
26 C -0.180 4.180
27 H 0.071 0.929
28 H 0.118 0.882
29 H 0.071 0.929
30 H 0.151 0.849
31 H 0.087 0.913
32 H 0.085 0.915
33 H 0.082 0.918
34 H 0.144 0.856
35 H 0.155 0.845
36 H 0.106 0.894
37 H 0.109 0.891
38 H 0.236 0.764
39 H 0.087 0.913
40 H 0.060 0.940
41 H 0.072 0.928
42 H 0.096 0.904
43 H 0.083 0.917
44 H 0.082 0.918
45 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -17.564 14.004 4.834 22.977
hybrid contribution 0.740 1.018 -0.893 1.543
sum -16.823 15.022 3.941 22.896
Atomic orbital electron populations
1.23060 0.78824 1.04048 1.00895 1.86277 1.20769 1.25605 1.88722
1.18250 0.89116 0.85310 1.01500 1.20897 0.99694 0.90949 1.07784
1.19582 0.93902 0.94480 1.01167 1.20723 0.99157 0.94467 1.02201
1.20726 0.92930 0.97882 1.01914 1.21128 1.00655 0.90994 1.06289
1.18351 0.88441 0.86206 1.01545 1.86285 1.16800 1.27328 1.88474
1.22573 0.80229 0.97693 1.03435 1.19871 0.83174 0.89791 0.78242
1.90722 1.62963 1.37965 1.49149 1.45836 1.04644 1.11396 1.73164
1.21046 0.92743 0.81480 1.00504 1.19039 0.89096 0.99607 0.90013
1.20345 1.40013 0.94424 0.99181 0.92155 1.25000 0.95062 0.94859
0.98194 1.69988 1.44554 1.04783 1.31621 0.86617 0.79222 0.79728
0.82598 1.20684 1.21154 1.19778 1.23024 1.03119 1.01628 0.97036
1.22472 1.02095 0.90188 1.03209 0.92861 0.88163 0.92874 0.84908
0.91289 0.91469 0.91778 0.85578 0.84465 0.89355 0.89143 0.76405
0.91255 0.93954 0.92808 0.90353 0.91681 0.91766 0.89465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.81 101.05 0.99 1.23 16
2 O -0.30 -4.30 10.28 -34.21 -0.35 -4.65 16
3 C 0.10 1.42 6.70 -39.12 -0.26 1.15 16
4 C -0.17 -1.83 8.69 -39.46 -0.34 -2.17 16
5 C -0.09 -0.86 5.88 -104.61 -0.62 -1.48 16
6 C -0.11 -0.70 10.01 36.00 0.36 -0.34 16
7 C -0.12 -1.14 9.69 -39.58 -0.38 -1.52 16
8 C -0.17 -1.95 9.04 -39.46 -0.36 -2.31 16
9 C 0.10 1.45 6.70 -39.12 -0.26 1.19 16
10 O -0.28 -4.73 9.45 -47.34 -0.45 -5.18 16
11 C 0.04 0.57 5.22 36.01 0.19 0.76 16
12 C 0.51 9.64 7.91 -10.98 -0.09 9.56 16
13 O -0.53 -12.57 16.50 -14.36 -0.24 -12.81 16
14 N -0.70 -13.25 5.48 -60.29 -0.33 -13.58 16
15 C 0.16 3.70 5.50 -4.04 -0.02 3.68 16
16 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16
17 C -0.50 -12.66 8.59 -34.44 -0.30 -12.95 16
18 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16
19 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16
20 N -0.87 -24.06 12.65 55.43 0.70 -23.36 16
21 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16
22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
25 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16
26 C -0.14 -3.22 9.14 -26.70 -0.24 -3.46 16
27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16
28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16
30 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16
31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16
33 H 0.06 0.35 8.08 -51.93 -0.42 -0.06 16
34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16
35 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16
36 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16
37 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16
38 H 0.40 6.68 8.33 -40.82 -0.34 6.34 16
39 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16
40 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16
41 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16
42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16
43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
44 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16
45 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16
LS Contribution 381.99 15.07 5.76 5.76
Total: -1.00 -32.77 381.99 -8.63 -41.40
By element:
Atomic # 1 Polarization: 13.02 SS G_CDS: -6.78 Total: 6.24 kcal
Atomic # 6 Polarization: -7.19 SS G_CDS: -1.92 Total: -9.11 kcal
Atomic # 7 Polarization: -37.31 SS G_CDS: 0.37 Total: -36.94 kcal
Atomic # 8 Polarization: -21.60 SS G_CDS: -1.04 Total: -22.64 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -32.77 -8.63 -41.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000431133275.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.606 kcal
(2) G-P(sol) polarization free energy of solvation -32.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds