Wall clock time and date at job start Tue Mar 31 2020 12:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35990 * 116.99988 * 2 1
4 4 C 1.38562 * 120.07335 * 0.02837 * 3 2 1
5 5 C 1.38247 * 120.00001 * 179.97438 * 4 3 2
6 6 C 1.50697 * 119.92748 * 179.97438 * 5 4 3
7 7 C 1.38254 * 120.14109 * 0.02562 * 5 4 3
8 8 C 1.38238 * 120.15207 * 359.67570 * 7 5 4
9 9 C 1.38566 * 119.99583 * 0.60055 * 8 7 5
10 10 O 1.35992 * 120.07341 * 179.69557 * 9 8 7
11 11 C 1.42903 * 116.99968 * 359.73139 * 10 9 8
12 12 C 1.50702 * 109.47071 * 179.97438 * 11 10 9
13 13 O 1.21285 * 119.99998 * 359.97438 * 12 11 10
14 14 N 1.34777 * 119.99855 * 179.97438 * 12 11 10
15 15 C 1.46498 * 119.99966 * 180.02562 * 14 12 11
16 16 C 1.53000 * 109.47299 * 184.79547 * 15 14 12
17 17 C 1.50704 * 115.54588 * 294.81766 * 16 15 14
18 18 H 1.07999 * 119.99785 * 95.20816 * 17 16 15
19 19 C 1.37877 * 119.99726 * 274.92551 * 17 16 15
20 20 N 1.31515 * 120.00084 * 355.41881 * 19 17 16
21 21 Si 1.86796 * 120.00102 * 175.42113 * 19 17 16
22 22 H 1.48504 * 109.47025 * 89.99775 * 21 19 17
23 23 H 1.48493 * 109.47332 * 210.00070 * 21 19 17
24 24 H 1.48499 * 109.47076 * 330.00113 * 21 19 17
25 25 C 1.53001 * 117.49754 * 80.48183 * 16 15 14
26 26 C 1.52994 * 117.50156 * 149.14359 * 16 15 14
27 27 H 1.08997 * 109.47594 * 59.99474 * 1 2 3
28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46976 * 299.99673 * 1 2 3
30 30 H 1.08003 * 120.00121 * 359.95102 * 4 3 2
31 31 H 1.09005 * 109.46799 * 90.00201 * 6 5 4
32 32 H 1.08999 * 109.47182 * 209.99973 * 6 5 4
33 33 H 1.09000 * 109.47410 * 330.00477 * 6 5 4
34 34 H 1.08007 * 119.92211 * 179.97438 * 7 5 4
35 35 H 1.07997 * 120.00376 * 180.32329 * 8 7 5
36 36 H 1.09003 * 109.47002 * 59.99911 * 11 10 9
37 37 H 1.09000 * 109.46519 * 299.99720 * 11 10 9
38 38 H 0.96999 * 119.99492 * 359.97438 * 14 12 11
39 39 H 1.09001 * 109.47302 * 64.79393 * 15 14 12
40 40 H 1.09005 * 109.46853 * 304.79585 * 15 14 12
41 41 H 0.97004 * 120.00173 * 185.00091 * 20 19 17
42 42 H 1.09003 * 117.49648 * 214.99946 * 25 16 15
43 43 H 1.08991 * 117.50066 * 0.03054 * 25 16 15
44 44 H 1.08996 * 117.49909 * 359.97438 * 26 16 15
45 45 H 1.09006 * 117.50020 * 144.97002 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3747 0.0006
5 6 1.9224 3.6057 0.0011
6 6 1.1017 4.8696 0.0012
7 6 3.3030 3.6797 0.0005
8 6 4.0603 2.5233 0.0062
9 6 3.4360 1.2863 -0.0001
10 8 4.1795 0.1476 -0.0009
11 6 5.6003 0.3006 -0.0009
12 6 6.2519 -1.0583 -0.0011
13 8 5.5669 -2.0593 -0.0007
14 7 7.5957 -1.1613 -0.0016
15 6 8.2291 -2.4823 -0.0024
16 6 9.7458 -2.3208 0.1177
17 6 10.4209 -1.6400 -1.0450
18 1 10.6172 -0.5786 -1.0094
19 6 10.7931 -2.3732 -2.1517
20 7 10.6416 -3.6796 -2.1564
21 14 11.5129 -1.5111 -3.6444
22 1 12.9895 -1.4338 -3.5072
23 1 11.1689 -2.2747 -4.8707
24 1 10.9524 -0.1394 -3.7419
25 6 10.3214 -2.0721 1.5133
26 6 10.5198 -3.4294 0.8337
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 0.2146 2.3196 0.0003
31 1 0.9035 5.1740 1.0289
32 1 1.6504 5.6591 -0.5122
33 1 0.1575 4.6898 -0.5129
34 1 3.7909 4.6433 0.0005
35 1 5.1386 2.5839 0.0110
36 1 5.9066 0.8498 0.8895
37 1 5.9064 0.8508 -0.8906
38 1 8.1434 -0.3608 -0.0023
39 1 7.9912 -2.9988 -0.9323
40 1 7.8576 -3.0638 0.8415
41 1 10.9695 -4.2032 -2.9042
42 1 11.1886 -1.4162 1.5905
43 1 9.6197 -2.0241 2.3459
44 1 9.9485 -4.2735 1.2197
45 1 11.5173 -3.6666 0.4636
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000431133275.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:48
Heat of formation + Delta-G solvation = -82.829359 kcal
Electronic energy + Delta-G solvation = -26036.840105 eV
Core-core repulsion = 22213.184061 eV
Total energy + Delta-G solvation = -3823.656044 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.66434 -40.71040 -39.32952 -38.45859 -38.04289 -35.05140 -33.95676 -32.89822
-31.36640 -30.21818 -28.61182 -27.83640 -27.01887 -26.41868 -23.38636 -22.93356
-22.40790 -21.47730 -21.07585 -19.58488 -18.60687 -18.09142 -17.77602 -17.47170
-17.24033 -16.69868 -16.57958 -16.47347 -15.79148 -15.59893 -15.41293 -15.16819
-14.94188 -14.63170 -14.38704 -14.35004 -13.78224 -13.75234 -13.47992 -13.11985
-13.01145 -12.93521 -12.80640 -12.72786 -12.36114 -12.22396 -12.10916 -12.03010
-12.00650 -11.65573 -11.42103 -10.97408 -10.94402 -10.44290 -10.08043 -9.90418
-9.66702 -8.73664 -8.08995 -6.23732 0.29923 0.43494 1.43159 1.46312
1.53988 1.55826 1.63920 2.39503 2.42763 2.71317 2.73903 3.19207
3.47247 3.70266 3.83576 3.96308 4.00946 4.12366 4.12779 4.23912
4.26346 4.36557 4.37532 4.43523 4.54184 4.64391 4.66129 4.69435
4.72073 4.84890 4.90915 4.98332 5.02576 5.11191 5.28569 5.28828
5.30360 5.51454 5.55869 5.63291 5.68982 5.78484 5.80190 6.06954
6.36232 6.59239 6.69777 6.85108 7.27753 7.46665 8.98034
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.017018 B = 0.002599 C = 0.002475
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.957825 B =10769.548631 C =11308.507785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.341 6.341
3 C 0.077 3.923
4 C -0.175 4.175
5 C -0.088 4.088
6 C -0.108 4.108
7 C -0.119 4.119
8 C -0.169 4.169
9 C 0.061 3.939
10 O -0.317 6.317
11 C 0.049 3.951
12 C 0.503 3.497
13 O -0.586 6.586
14 N -0.690 5.690
15 C 0.179 3.821
16 C 0.003 3.997
17 C -0.504 4.504
18 H 0.069 0.931
19 C 0.022 3.978
20 N -0.910 5.910
21 Si 0.950 3.050
22 H -0.277 1.277
23 H -0.295 1.295
24 H -0.260 1.260
25 C -0.174 4.174
26 C -0.156 4.156
27 H 0.068 0.932
28 H 0.108 0.892
29 H 0.069 0.931
30 H 0.155 0.845
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.073 0.927
34 H 0.155 0.845
35 H 0.157 0.843
36 H 0.126 0.874
37 H 0.118 0.882
38 H 0.416 0.584
39 H 0.026 0.974
40 H 0.038 0.962
41 H 0.258 0.742
42 H 0.088 0.912
43 H 0.088 0.912
44 H 0.067 0.933
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.617 19.307 5.519 26.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.256 6.256
3 C 0.032 3.968
4 C -0.193 4.193
5 C -0.089 4.089
6 C -0.164 4.164
7 C -0.137 4.137
8 C -0.188 4.188
9 C 0.016 3.984
10 O -0.230 6.230
11 C -0.029 4.029
12 C 0.289 3.711
13 O -0.466 6.466
14 N -0.341 5.341
15 C 0.055 3.945
16 C 0.002 3.998
17 C -0.542 4.542
18 H 0.087 0.913
19 C -0.179 4.179
20 N -0.547 5.547
21 Si 0.776 3.224
22 H -0.203 1.203
23 H -0.221 1.221
24 H -0.184 1.184
25 C -0.211 4.211
26 C -0.194 4.194
27 H 0.086 0.914
28 H 0.126 0.874
29 H 0.088 0.912
30 H 0.172 0.828
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.092 0.908
34 H 0.173 0.827
35 H 0.175 0.825
36 H 0.143 0.857
37 H 0.135 0.865
38 H 0.253 0.747
39 H 0.045 0.955
40 H 0.056 0.944
41 H 0.067 0.933
42 H 0.106 0.894
43 H 0.106 0.894
44 H 0.085 0.915
45 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -18.113 18.047 5.376 26.128
hybrid contribution 0.821 -0.164 -1.021 1.320
sum -17.292 17.883 4.355 25.254
Atomic orbital electron populations
1.23316 0.76640 1.05165 1.02385 1.86209 1.23339 1.26838 1.89170
1.18675 0.89463 0.86000 1.02670 1.21192 1.00731 0.90389 1.07021
1.20059 0.94417 0.95305 0.99076 1.20800 0.99257 0.93084 1.03287
1.21138 0.93207 0.98544 1.00827 1.21412 1.01834 0.90298 1.05248
1.18759 0.88808 0.86415 1.04435 1.86205 1.17704 1.29557 1.89578
1.22559 0.79569 0.94389 1.06377 1.20734 0.82726 0.91257 0.76383
1.90694 1.64051 1.40394 1.51454 1.45652 1.05020 1.10581 1.72864
1.20611 0.92800 0.82955 0.98102 1.19057 0.89048 1.00399 0.91276
1.20703 1.38993 0.94868 0.99602 0.91270 1.25749 0.95919 0.95352
1.00865 1.70124 1.46151 1.06189 1.32257 0.85669 0.78595 0.79059
0.79034 1.20260 1.22150 1.18393 1.23012 1.03044 0.99275 0.95816
1.22397 1.01029 0.91477 1.04532 0.91374 0.87407 0.91217 0.82752
0.90108 0.90153 0.90778 0.82695 0.82501 0.85685 0.86454 0.74726
0.95530 0.94356 0.93271 0.89354 0.89354 0.91468 0.91625
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.33 9.81 113.37 1.11 1.44 16
2 O -0.34 -10.08 10.28 -79.58 -0.82 -10.90 16
3 C 0.08 2.10 6.70 22.57 0.15 2.25 16
4 C -0.17 -3.37 8.69 22.35 0.19 -3.18 16
5 C -0.09 -1.42 5.88 -19.86 -0.12 -1.53 16
6 C -0.11 -0.97 10.01 71.23 0.71 -0.26 16
7 C -0.12 -1.95 9.69 22.27 0.22 -1.73 16
8 C -0.17 -3.47 9.04 22.35 0.20 -3.27 16
9 C 0.06 1.73 6.70 22.57 0.15 1.88 16
10 O -0.32 -10.98 9.45 -67.04 -0.63 -11.62 16
11 C 0.05 1.36 5.22 71.24 0.37 1.73 16
12 C 0.50 19.28 7.91 87.66 0.69 19.98 16
13 O -0.59 -28.87 16.50 15.99 0.26 -28.60 16
14 N -0.69 -25.83 5.48 -463.05 -2.54 -28.37 16
15 C 0.18 8.23 5.50 86.38 0.48 8.70 16
16 C 0.00 0.14 1.47 -52.93 -0.08 0.06 16
17 C -0.50 -25.12 8.59 25.60 0.22 -24.90 16
18 H 0.07 3.26 7.82 -2.91 -0.02 3.23 16
19 C 0.02 1.14 5.43 84.65 0.46 1.60 16
20 N -0.91 -51.46 12.65 21.45 0.27 -51.19 16
21 Si 0.95 41.65 29.54 68.60 2.03 43.67 16
22 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16
23 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16
24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16
25 C -0.17 -6.80 9.96 30.62 0.30 -6.50 16
26 C -0.16 -7.14 9.14 30.62 0.28 -6.86 16
27 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16
28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
29 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16
30 H 0.15 2.11 6.30 -2.91 -0.02 2.10 16
31 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16
32 H 0.08 0.54 8.08 -2.39 -0.02 0.53 16
33 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16
34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16
35 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16
36 H 0.13 2.49 7.65 -2.39 -0.02 2.47 16
37 H 0.12 2.57 7.68 -2.39 -0.02 2.56 16
38 H 0.42 13.09 8.33 -92.71 -0.77 12.32 16
39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
40 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16
41 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16
42 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16
43 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16
44 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16
45 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16
Total: -1.00 -74.86 381.99 4.15 -70.71
By element:
Atomic # 1 Polarization: 26.65 SS G_CDS: 0.23 Total: 26.87 kcal
Atomic # 6 Polarization: -15.93 SS G_CDS: 5.35 Total: -10.58 kcal
Atomic # 7 Polarization: -77.29 SS G_CDS: -2.27 Total: -79.56 kcal
Atomic # 8 Polarization: -49.93 SS G_CDS: -1.19 Total: -51.11 kcal
Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal
Total: -74.86 4.15 -70.71 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000431133275.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.122 kcal
(2) G-P(sol) polarization free energy of solvation -74.856 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds