Wall clock time and date at job start Tue Mar 31 2020 12:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.50672 * 2 1 4 4 O 1.43983 * 110.57346 * 122.75744 * 2 1 3 5 5 C 1.36600 * 105.47448 * 91.41690 * 4 2 1 6 6 C 1.38557 * 131.44332 * 197.57323 * 5 4 2 7 7 C 1.38172 * 120.11688 * 180.21468 * 6 5 4 8 8 C 1.38848 * 120.06716 * 359.48701 * 7 6 5 9 9 N 1.40095 * 119.99699 * 180.27977 * 8 7 6 10 10 C 1.34776 * 120.00199 * 144.90905 * 9 8 7 11 11 O 1.21294 * 119.99581 * 4.61060 * 10 9 8 12 12 C 1.50700 * 120.00123 * 184.61561 * 10 9 8 13 13 C 1.52998 * 109.46737 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46976 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47344 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47106 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99806 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99660 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47525 * 59.99550 * 20 18 16 22 22 H 1.48494 * 109.47079 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47007 * 300.00021 * 20 18 16 24 24 C 1.38792 * 119.99764 * 0.25385 * 8 7 6 25 25 C 1.38494 * 119.98005 * 359.97438 * 24 8 7 26 26 O 1.36509 * 131.46555 * 179.97438 * 25 24 8 27 27 H 1.09002 * 109.47145 * 297.94056 * 1 2 3 28 28 H 1.09000 * 109.47633 * 57.94608 * 1 2 3 29 29 H 1.09002 * 109.47333 * 177.94452 * 1 2 3 30 30 H 1.09005 * 109.46733 * 182.05736 * 3 2 1 31 31 H 1.08995 * 109.47542 * 302.05371 * 3 2 1 32 32 H 1.09004 * 109.47356 * 62.05882 * 3 2 1 33 33 H 1.08003 * 119.93768 * 359.95357 * 6 5 4 34 34 H 1.08002 * 119.96518 * 179.76360 * 7 6 5 35 35 H 0.97005 * 120.00200 * 324.89931 * 9 8 7 36 36 H 1.09001 * 109.47162 * 299.99771 * 12 10 9 37 37 H 1.09001 * 109.46881 * 59.99872 * 12 10 9 38 38 H 1.08996 * 109.47330 * 299.99469 * 13 12 10 39 39 H 1.09001 * 109.47326 * 60.00406 * 13 12 10 40 40 H 1.09001 * 109.47005 * 300.00082 * 14 13 12 41 41 H 1.09001 * 109.46799 * 60.00037 * 14 13 12 42 42 H 1.09001 * 109.47125 * 299.99995 * 15 14 13 43 43 H 1.09006 * 109.47155 * 59.99755 * 15 14 13 44 44 H 0.96999 * 119.99323 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.01497 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4330 0.0000 4 8 2.0360 -0.7294 1.1336 5 6 2.1945 -2.0146 0.6988 6 6 2.3367 -3.2061 1.3916 7 6 2.4890 -4.3944 0.7031 8 6 2.4894 -4.3988 -0.6853 9 7 2.6381 -5.6052 -1.3819 10 6 1.9855 -5.7964 -2.5455 11 8 1.3364 -4.8947 -3.0320 12 6 2.0622 -7.1306 -3.2420 13 6 1.2386 -7.0812 -4.5305 14 6 1.3159 -8.4360 -5.2374 15 6 0.4929 -8.3865 -6.5262 16 6 0.5696 -9.7207 -7.2228 17 1 1.1472 -10.5237 -6.7893 18 6 -0.0977 -9.9161 -8.4135 19 7 -0.8014 -8.9382 -8.9409 20 14 -0.0032 -11.5700 -9.2765 21 1 -0.5453 -12.6258 -8.3840 22 1 -0.8009 -11.5215 -10.5281 23 1 1.4123 -11.8774 -9.6038 24 6 2.3419 -3.2081 -1.3831 25 6 2.1938 -2.0160 -0.6940 26 8 2.0352 -0.7327 -1.1315 27 1 -0.3633 0.4815 0.9079 28 1 -0.3634 0.5454 -0.8710 29 1 -0.3634 -1.0270 -0.0369 30 1 3.1552 1.4135 -0.0369 31 1 1.6825 1.9644 -0.8709 32 1 1.7422 1.9421 0.9079 33 1 2.3326 -3.2055 2.4716 34 1 2.6035 -5.3213 1.2456 35 1 3.2109 -6.3029 -1.0268 36 1 3.1012 -7.3556 -3.4828 37 1 1.6650 -7.9059 -2.5868 38 1 0.1997 -6.8565 -4.2893 39 1 1.6354 -6.3059 -5.1859 40 1 2.3548 -8.6612 -5.4786 41 1 0.9188 -9.2110 -4.5818 42 1 -0.5460 -8.1610 -6.2855 43 1 0.8904 -7.6114 -7.1816 44 1 -1.2711 -9.0759 -9.7784 45 1 2.3425 -3.2112 -2.4631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588156380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:21 Heat of formation + Delta-G solvation = -93.294658 kcal Electronic energy + Delta-G solvation = -25629.815921 eV Core-core repulsion = 21805.706067 eV Total energy + Delta-G solvation = -3824.109853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.55267 -40.45554 -38.02318 -36.43439 -35.03734 -34.68465 -32.94082 -32.62502 -30.71976 -29.89093 -28.49144 -27.94130 -25.68374 -23.50517 -23.19158 -22.40145 -21.92237 -20.35187 -20.02416 -18.92228 -18.05968 -17.04627 -16.71135 -16.37560 -16.15010 -15.77800 -15.52471 -14.99882 -14.58987 -14.46118 -14.25144 -13.97593 -13.82586 -13.41556 -13.23492 -13.19993 -12.88805 -12.76438 -12.64010 -12.59670 -12.42299 -12.21406 -11.75963 -11.64882 -11.61502 -11.34283 -10.98364 -10.56388 -10.54723 -10.43863 -10.08973 -9.88819 -9.62728 -9.24901 -9.00860 -8.89589 -8.30630 -7.99480 -5.95483 -3.98151 0.82888 0.99431 2.35133 2.54586 2.87966 3.10981 3.35061 3.38135 3.39591 3.41677 4.15413 4.18604 4.28393 4.48380 4.60277 4.68935 4.80574 4.88832 5.00076 5.07930 5.12899 5.15952 5.22616 5.28450 5.36974 5.39755 5.49218 5.54557 5.61984 5.77046 5.85259 5.93806 5.95631 6.05412 6.09308 6.25055 6.41784 6.51521 6.80357 6.95301 6.98161 7.15652 7.20921 7.73119 7.88899 8.01970 8.05733 8.47121 9.09325 9.65410 11.15778 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001919 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.104359 B =14590.940355 C =15381.081999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.255 3.745 3 C -0.145 4.145 4 O -0.301 6.301 5 C 0.011 3.989 6 C -0.083 4.083 7 C -0.140 4.140 8 C 0.162 3.838 9 N -0.678 5.678 10 C 0.511 3.489 11 O -0.512 6.512 12 C -0.136 4.136 13 C -0.105 4.105 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.107 4.107 25 C 0.054 3.946 26 O -0.297 6.297 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.414 0.586 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 16.377 25.012 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.181 3.819 3 C -0.202 4.202 4 O -0.218 6.218 5 C -0.034 4.034 6 C -0.102 4.102 7 C -0.160 4.160 8 C 0.067 3.933 9 N -0.324 5.324 10 C 0.300 3.700 11 O -0.386 6.386 12 C -0.176 4.176 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.128 4.128 25 C 0.008 3.992 26 O -0.213 6.213 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.618 17.244 24.433 30.861 hybrid contribution 0.189 -1.143 -0.338 1.207 sum 7.806 16.101 24.096 30.013 Atomic orbital electron populations 1.22565 0.92810 1.04508 1.04363 1.24492 0.93646 0.91840 0.71959 1.21913 1.03117 0.90810 1.04344 1.87421 1.81750 1.16857 1.35803 1.19769 1.05988 0.86037 0.91645 1.19777 1.02576 0.87694 1.00151 1.20646 1.05353 0.98119 0.91905 1.17253 1.00209 0.85365 0.90454 1.43702 1.48756 1.16095 1.23880 1.21415 0.77587 0.91321 0.79650 1.90726 1.39967 1.44127 1.63773 1.21826 1.03789 0.92819 0.99187 1.21484 0.99566 0.99866 0.93363 1.21652 1.00556 0.93769 0.98816 1.19093 0.94942 0.96905 0.90791 1.21241 1.30286 0.98186 1.06251 0.92791 1.25049 0.95454 0.96682 0.97424 1.69966 1.32144 1.31767 1.19554 0.86662 0.78020 0.84400 0.78910 1.20292 1.21325 1.20293 1.20107 1.03872 0.86875 1.01940 1.19531 1.02532 0.85803 0.91296 1.87448 1.81310 1.16768 1.35798 0.89659 0.89516 0.91094 0.90489 0.89297 0.89351 0.84464 0.84164 0.74935 0.88638 0.88614 0.91671 0.91657 0.93394 0.93399 0.96586 0.96580 0.92978 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 9.19 37.16 0.34 -1.19 16 2 C 0.25 2.55 1.61 -26.73 -0.04 2.50 16 3 C -0.14 -0.98 9.39 37.16 0.35 -0.63 16 4 O -0.30 -3.41 10.82 -46.02 -0.50 -3.91 16 5 C 0.01 0.12 6.98 -39.08 -0.27 -0.15 16 6 C -0.08 -0.76 10.05 -39.49 -0.40 -1.16 16 7 C -0.14 -1.20 9.96 -39.38 -0.39 -1.59 16 8 C 0.16 1.78 6.30 -83.65 -0.53 1.26 16 9 N -0.68 -6.53 5.34 -9.84 -0.05 -6.58 16 10 C 0.51 6.64 7.67 -10.99 -0.08 6.56 16 11 O -0.51 -8.82 13.42 5.55 0.07 -8.75 16 12 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 13 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 14 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.11 -1.44 8.71 -39.28 -0.34 -1.78 16 25 C 0.05 0.71 6.94 -39.10 -0.27 0.44 16 26 O -0.30 -3.86 10.82 -45.72 -0.49 -4.35 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.70 7.94 -51.93 -0.41 0.28 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.41 2.39 8.82 -40.82 -0.36 2.03 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 45 H 0.15 2.32 6.22 -52.48 -0.33 2.00 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.30 377.15 -9.15 -44.45 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.98 Total: -1.47 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.61 Total: -15.17 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.68 Total: -33.31 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.92 Total: -17.01 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.30 -9.15 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.844 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds