Wall clock time and date at job start Tue Mar 31 2020 12:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.50672 * 2 1 4 4 O 1.43983 * 110.57346 * 122.75744 * 2 1 3 5 5 C 1.36600 * 105.47448 * 91.41690 * 4 2 1 6 6 C 1.38557 * 131.44332 * 197.57323 * 5 4 2 7 7 C 1.38172 * 120.11688 * 180.21468 * 6 5 4 8 8 C 1.38848 * 120.06716 * 359.48701 * 7 6 5 9 9 N 1.40095 * 119.99699 * 180.27977 * 8 7 6 10 10 C 1.34776 * 120.00199 * 144.90905 * 9 8 7 11 11 O 1.21294 * 119.99581 * 4.61060 * 10 9 8 12 12 C 1.50700 * 120.00123 * 184.61561 * 10 9 8 13 13 C 1.52998 * 109.46737 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46976 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47344 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47106 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99806 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99660 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99956 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47525 * 59.99550 * 20 18 16 22 22 H 1.48494 * 109.47079 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47007 * 300.00021 * 20 18 16 24 24 C 1.38792 * 119.99764 * 0.25385 * 8 7 6 25 25 C 1.38494 * 119.98005 * 359.97438 * 24 8 7 26 26 O 1.36509 * 131.46555 * 179.97438 * 25 24 8 27 27 H 1.09002 * 109.47145 * 297.94056 * 1 2 3 28 28 H 1.09000 * 109.47633 * 57.94608 * 1 2 3 29 29 H 1.09002 * 109.47333 * 177.94452 * 1 2 3 30 30 H 1.09005 * 109.46733 * 182.05736 * 3 2 1 31 31 H 1.08995 * 109.47542 * 302.05371 * 3 2 1 32 32 H 1.09004 * 109.47356 * 62.05882 * 3 2 1 33 33 H 1.08003 * 119.93768 * 359.95357 * 6 5 4 34 34 H 1.08002 * 119.96518 * 179.76360 * 7 6 5 35 35 H 0.97005 * 120.00200 * 324.89931 * 9 8 7 36 36 H 1.09001 * 109.47162 * 299.99771 * 12 10 9 37 37 H 1.09001 * 109.46881 * 59.99872 * 12 10 9 38 38 H 1.08996 * 109.47330 * 299.99469 * 13 12 10 39 39 H 1.09001 * 109.47326 * 60.00406 * 13 12 10 40 40 H 1.09001 * 109.47005 * 300.00082 * 14 13 12 41 41 H 1.09001 * 109.46799 * 60.00037 * 14 13 12 42 42 H 1.09001 * 109.47125 * 299.99995 * 15 14 13 43 43 H 1.09006 * 109.47155 * 59.99755 * 15 14 13 44 44 H 0.96999 * 119.99323 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.01497 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0660 1.4330 0.0000 4 8 2.0360 -0.7294 1.1336 5 6 2.1945 -2.0146 0.6988 6 6 2.3367 -3.2061 1.3916 7 6 2.4890 -4.3944 0.7031 8 6 2.4894 -4.3988 -0.6853 9 7 2.6381 -5.6052 -1.3819 10 6 1.9855 -5.7964 -2.5455 11 8 1.3364 -4.8947 -3.0320 12 6 2.0622 -7.1306 -3.2420 13 6 1.2386 -7.0812 -4.5305 14 6 1.3159 -8.4360 -5.2374 15 6 0.4929 -8.3865 -6.5262 16 6 0.5696 -9.7207 -7.2228 17 1 1.1472 -10.5237 -6.7893 18 6 -0.0977 -9.9161 -8.4135 19 7 -0.8014 -8.9382 -8.9409 20 14 -0.0032 -11.5700 -9.2765 21 1 -0.5453 -12.6258 -8.3840 22 1 -0.8009 -11.5215 -10.5281 23 1 1.4123 -11.8774 -9.6038 24 6 2.3419 -3.2081 -1.3831 25 6 2.1938 -2.0160 -0.6940 26 8 2.0352 -0.7327 -1.1315 27 1 -0.3633 0.4815 0.9079 28 1 -0.3634 0.5454 -0.8710 29 1 -0.3634 -1.0270 -0.0369 30 1 3.1552 1.4135 -0.0369 31 1 1.6825 1.9644 -0.8709 32 1 1.7422 1.9421 0.9079 33 1 2.3326 -3.2055 2.4716 34 1 2.6035 -5.3213 1.2456 35 1 3.2109 -6.3029 -1.0268 36 1 3.1012 -7.3556 -3.4828 37 1 1.6650 -7.9059 -2.5868 38 1 0.1997 -6.8565 -4.2893 39 1 1.6354 -6.3059 -5.1859 40 1 2.3548 -8.6612 -5.4786 41 1 0.9188 -9.2110 -4.5818 42 1 -0.5460 -8.1610 -6.2855 43 1 0.8904 -7.6114 -7.1816 44 1 -1.2711 -9.0759 -9.7784 45 1 2.3425 -3.2112 -2.4631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588156380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:20 Heat of formation + Delta-G solvation = -115.933435 kcal Electronic energy + Delta-G solvation = -25630.797612 eV Core-core repulsion = 21805.706067 eV Total energy + Delta-G solvation = -3825.091544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.36411 -41.42679 -38.92902 -37.28715 -36.64932 -35.64610 -34.62141 -33.61461 -31.85419 -31.20700 -29.48651 -28.58872 -27.36513 -24.76083 -24.15232 -23.45060 -22.93568 -21.76220 -21.29515 -19.76799 -18.91268 -18.40968 -17.93660 -17.58754 -17.23246 -16.83290 -16.51231 -16.37886 -15.79324 -15.69638 -15.23008 -15.10127 -14.80313 -14.52445 -14.15678 -14.04221 -13.97493 -13.72437 -13.60416 -13.51800 -13.40914 -13.27477 -13.17789 -13.05340 -12.78582 -12.44793 -12.37538 -12.20495 -12.14688 -12.09346 -11.36350 -11.34247 -11.16439 -10.91200 -10.78913 -10.53915 -9.77898 -8.82792 -8.18172 -6.30363 -0.01480 0.15605 1.40669 1.44709 1.46933 1.52540 1.65870 2.06507 2.33404 2.42494 2.55890 3.14458 3.45297 3.48074 3.51155 3.71009 3.96101 4.00645 4.08100 4.13964 4.16209 4.35397 4.42604 4.49692 4.55489 4.63174 4.68517 4.70261 4.77585 4.85443 4.88121 4.92829 5.00365 5.07589 5.15134 5.16806 5.19874 5.23047 5.34504 5.39174 5.56698 5.60307 5.79222 5.89064 6.11813 6.25688 6.40304 6.88384 7.12672 7.39221 8.93836 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001919 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.104359 B =14590.940355 C =15381.081999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.241 3.759 3 C -0.141 4.141 4 O -0.308 6.308 5 C 0.000 4.000 6 C -0.077 4.077 7 C -0.118 4.118 8 C 0.150 3.850 9 N -0.655 5.655 10 C 0.510 3.490 11 O -0.566 6.566 12 C -0.123 4.123 13 C -0.098 4.098 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.133 4.133 25 C 0.027 3.973 26 O -0.324 6.324 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.436 0.564 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.064 0.936 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.262 0.738 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.516 14.376 27.899 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.168 3.832 3 C -0.198 4.198 4 O -0.225 6.225 5 C -0.045 4.045 6 C -0.096 4.096 7 C -0.138 4.138 8 C 0.055 3.945 9 N -0.303 5.303 10 C 0.300 3.700 11 O -0.443 6.443 12 C -0.162 4.162 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.154 4.154 25 C -0.019 4.019 26 O -0.241 6.241 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.188 0.812 34 H 0.202 0.798 35 H 0.277 0.723 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.002 0.998 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.022 15.219 27.372 32.593 hybrid contribution -0.253 -0.448 -1.213 1.318 sum 8.769 14.771 26.159 31.295 Atomic orbital electron populations 1.22577 0.91822 1.03547 1.05948 1.24991 0.94594 0.92731 0.70919 1.21991 1.02708 0.89034 1.06076 1.87386 1.81979 1.16853 1.36285 1.20120 1.06302 0.86978 0.91134 1.20283 1.00757 0.86765 1.01782 1.21081 1.02489 0.99606 0.90578 1.17432 1.00701 0.84757 0.91599 1.43414 1.48064 1.16191 1.22643 1.21574 0.77126 0.91009 0.80241 1.90734 1.42515 1.45739 1.65330 1.21696 1.04663 0.93110 0.96769 1.21272 0.99363 0.97422 0.95616 1.21445 1.00041 0.95788 0.96021 1.19067 0.94087 0.95343 0.93481 1.21740 1.30281 0.99170 1.06738 0.91412 1.26119 0.94902 1.01115 0.98454 1.70133 1.33207 1.34439 1.20114 0.85427 0.78610 0.79048 0.77509 1.18838 1.21207 1.18898 1.20075 1.06030 0.88548 1.00761 1.19736 1.03891 0.85791 0.92435 1.87403 1.81865 1.17220 1.37606 0.87330 0.88671 0.93213 0.91107 0.88106 0.87040 0.81182 0.79793 0.72271 0.85501 0.85322 0.93863 0.93945 0.91873 0.91777 0.99802 0.99865 0.92902 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.19 71.98 0.66 -2.37 16 2 C 0.24 4.90 1.61 30.59 0.05 4.95 16 3 C -0.14 -1.83 9.39 71.98 0.68 -1.15 16 4 O -0.31 -6.85 10.82 -77.23 -0.84 -7.69 16 5 C 0.00 -0.01 6.98 22.60 0.16 0.15 16 6 C -0.08 -1.22 10.05 22.33 0.22 -1.00 16 7 C -0.12 -1.64 9.96 22.40 0.22 -1.42 16 8 C 0.15 3.14 6.30 38.10 0.24 3.38 16 9 N -0.65 -11.29 5.34 -303.44 -1.62 -12.91 16 10 C 0.51 12.96 7.67 87.66 0.67 13.63 16 11 O -0.57 -20.59 13.42 -3.07 -0.04 -20.63 16 12 C -0.12 -2.69 5.70 29.85 0.17 -2.52 16 13 C -0.10 -3.42 4.50 30.60 0.14 -3.28 16 14 C -0.10 -3.78 5.15 30.60 0.16 -3.62 16 15 C 0.02 0.95 4.97 29.85 0.15 1.10 16 16 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 19 N -0.94 -59.29 13.29 21.45 0.28 -59.00 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 C -0.13 -3.80 8.71 22.46 0.20 -3.60 16 25 C 0.03 0.74 6.94 22.58 0.16 0.90 16 26 O -0.32 -9.07 10.82 -76.15 -0.82 -9.89 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.03 7.94 -2.39 -0.02 1.01 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.44 3.35 8.82 -92.70 -0.82 2.53 16 36 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 44 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 4.14 6.22 -2.91 -0.02 4.12 16 Total: -1.00 -83.16 377.15 3.73 -79.43 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.17 Total: 9.87 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.57 Total: -25.92 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.34 Total: -71.92 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.70 Total: -38.22 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -83.16 3.73 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.506 kcal (2) G-P(sol) polarization free energy of solvation -83.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds