Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38289 * 119.97382 * 2 1 4 4 C 1.38237 * 120.11014 * 180.27716 * 3 2 1 5 5 C 1.38171 * 120.06045 * 359.74710 * 4 3 2 6 6 C 1.38718 * 119.93932 * 359.97438 * 5 4 3 7 7 O 1.35899 * 120.05373 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99912 * 0.02638 * 7 6 5 9 9 C 1.53002 * 109.47036 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47357 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99688 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00195 * 179.97438 * 10 9 8 13 13 C 1.47419 * 125.64788 * 0.02562 * 12 10 9 14 14 C 1.54916 * 104.83085 * 204.09223 * 13 12 10 15 15 C 1.55152 * 101.58170 * 322.98844 * 14 13 12 16 16 O 1.42904 * 110.72158 * 276.96236 * 15 14 13 17 17 C 1.50700 * 110.71812 * 153.86512 * 15 14 13 18 18 H 1.08000 * 120.00259 * 5.09610 * 17 15 14 19 19 C 1.37885 * 119.99836 * 185.09302 * 17 15 14 20 20 N 1.31507 * 120.00025 * 183.77274 * 19 17 15 21 21 Si 1.86800 * 119.99859 * 3.77553 * 19 17 15 22 22 H 1.48503 * 109.47134 * 84.82596 * 21 19 17 23 23 H 1.48498 * 109.47179 * 204.82686 * 21 19 17 24 24 H 1.48497 * 109.47220 * 324.82820 * 21 19 17 25 25 C 1.47027 * 125.64997 * 179.71301 * 12 10 9 26 26 C 1.38123 * 119.97012 * 179.76673 * 2 1 3 27 27 H 1.09010 * 109.46977 * 270.23363 * 1 2 3 28 28 H 1.09000 * 109.47244 * 30.22841 * 1 2 3 29 29 H 1.08998 * 109.47022 * 150.23737 * 1 2 3 30 30 H 1.07995 * 119.94423 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.97579 * 179.72272 * 4 3 2 32 32 H 1.07997 * 120.03221 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47030 * 299.99299 * 8 7 6 34 34 H 1.09002 * 109.47570 * 59.99783 * 8 7 6 35 35 H 1.09002 * 109.47061 * 299.99919 * 9 8 7 36 36 H 1.09002 * 109.47048 * 59.99550 * 9 8 7 37 37 H 1.09004 * 110.36547 * 322.92901 * 13 12 10 38 38 H 1.09001 * 110.37312 * 85.25797 * 13 12 10 39 39 H 1.09002 * 111.00370 * 81.06356 * 14 13 12 40 40 H 1.09006 * 111.00044 * 204.87358 * 14 13 12 41 41 H 0.96703 * 113.99551 * 298.54387 * 16 15 14 42 42 H 0.97003 * 120.00406 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.87956 * 298.39628 * 25 12 10 44 44 H 1.08998 * 109.87815 * 59.55598 * 25 12 10 45 45 H 1.08001 * 120.03132 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0058 5 6 4.2752 0.0070 -0.0063 6 6 3.5845 -1.1960 -0.0005 7 8 4.2657 -2.3719 -0.0015 8 6 5.6926 -2.2950 -0.0081 9 6 6.2795 -3.7080 -0.0077 10 6 7.7843 -3.6270 -0.0140 11 8 8.3333 -2.5456 -0.0190 12 7 8.5199 -4.7563 -0.0142 13 6 7.9852 -6.1300 -0.0092 14 6 9.1176 -6.9941 0.5999 15 6 10.3805 -6.3145 0.0081 16 8 10.6434 -6.7972 -1.3110 17 6 11.5733 -6.5355 0.9022 18 1 11.4870 -7.1724 1.7702 19 6 12.7750 -5.9246 0.6122 20 7 13.8349 -6.1756 1.3490 21 14 12.8972 -4.7406 -0.8274 22 1 12.4723 -3.3860 -0.3917 23 1 14.3015 -4.6883 -1.3075 24 1 12.0150 -5.2060 -1.9275 25 6 9.9887 -4.8222 -0.0261 26 6 2.1970 -1.1965 0.0049 27 1 -0.3633 0.0042 1.0278 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3633 -0.8921 -0.5101 30 1 1.6566 2.1324 0.0004 31 1 4.1176 2.1380 -0.0103 32 1 5.3552 0.0101 -0.0112 33 1 6.0237 -1.7641 -0.9006 34 1 6.0319 -1.7608 0.8793 35 1 5.9484 -4.2387 0.8850 36 1 5.9402 -4.2426 -0.8949 37 1 7.0900 -6.1864 0.6103 38 1 7.7650 -6.4553 -1.0259 39 1 9.1141 -6.9321 1.6881 40 1 9.0393 -8.0299 0.2694 41 1 10.8201 -7.7470 -1.3542 42 1 14.6804 -5.7462 1.1447 43 1 10.3733 -4.3565 -0.9334 44 1 10.3895 -4.3153 0.8517 45 1 1.6570 -2.1319 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = -117.312882 kcal Electronic energy + Delta-G solvation = -26175.286222 eV Core-core repulsion = 22350.134861 eV Total energy + Delta-G solvation = -3825.151361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.44809 -40.98154 -39.32798 -38.58782 -36.22586 -34.56246 -33.56994 -33.31592 -31.76703 -30.76747 -30.18683 -27.93882 -27.23691 -25.19074 -24.03903 -23.50861 -21.89625 -21.52748 -20.45493 -19.22476 -19.00967 -18.05635 -17.69043 -17.26457 -16.95432 -16.89344 -16.60490 -16.31289 -16.14477 -15.45859 -15.13048 -14.94958 -14.65167 -14.51331 -14.42593 -14.21318 -14.14806 -13.70760 -13.56151 -13.52584 -13.19415 -12.97151 -12.72027 -12.69780 -12.62868 -12.45935 -12.41472 -12.12833 -12.01491 -11.76173 -11.74721 -11.16431 -11.00727 -10.88273 -10.28397 -9.75955 -9.73304 -9.18847 -8.44155 -6.55912 0.33561 0.46027 1.27326 1.33584 1.46933 1.53629 1.62201 2.27825 2.36407 2.77162 2.92800 3.39034 3.55466 3.76464 3.78156 3.85355 3.87772 3.96328 4.14085 4.18674 4.26152 4.30787 4.35861 4.40018 4.43827 4.53095 4.60026 4.64497 4.69777 4.80917 4.85650 4.87374 4.96983 5.03236 5.10027 5.22811 5.24427 5.35278 5.37724 5.48617 5.50119 5.63743 5.83483 6.04206 6.35924 6.47789 6.57512 6.98658 7.14748 7.30868 8.69699 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028796 B = 0.002358 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.110510 B =11871.218190 C =12470.499177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.084 4.084 5 C -0.232 4.232 6 C 0.114 3.886 7 O -0.320 6.320 8 C 0.081 3.919 9 C -0.118 4.118 10 C 0.521 3.479 11 O -0.596 6.596 12 N -0.612 5.612 13 C 0.101 3.899 14 C -0.139 4.139 15 C 0.211 3.789 16 O -0.577 6.577 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.043 3.957 20 N -0.928 5.928 21 Si 0.915 3.085 22 H -0.294 1.294 23 H -0.297 1.297 24 H -0.216 1.216 25 C 0.115 3.885 26 C -0.165 4.165 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.888 7.150 -4.089 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.102 4.102 5 C -0.251 4.251 6 C 0.069 3.931 7 O -0.234 6.234 8 C 0.005 3.995 9 C -0.157 4.157 10 C 0.312 3.688 11 O -0.478 6.478 12 N -0.344 5.344 13 C -0.020 4.020 14 C -0.177 4.177 15 C 0.171 3.829 16 O -0.386 6.386 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.158 4.158 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.222 1.222 23 H -0.224 1.224 24 H -0.139 1.139 25 C -0.009 4.009 26 C -0.184 4.184 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.648 8.202 -4.223 29.147 hybrid contribution 1.780 0.324 -0.079 1.811 sum -25.868 8.526 -4.302 27.574 Atomic orbital electron populations 1.20870 0.88491 1.04038 1.03494 1.20107 0.97695 0.91790 0.95782 1.21292 0.93917 0.98680 1.04301 1.21238 0.94929 0.97613 0.96447 1.21469 1.00639 0.93061 1.09946 1.19257 0.92405 0.84584 0.96889 1.85920 1.19862 1.28742 1.88836 1.22300 0.77471 0.97437 1.02243 1.21359 0.88011 0.97980 1.08361 1.20721 0.90362 0.82185 0.75537 1.90689 1.74968 1.29177 1.52989 1.48717 1.06579 1.07725 1.71426 1.22670 0.97794 0.78753 1.02766 1.23276 0.93287 1.00262 1.00851 1.19817 0.92907 0.88791 0.81401 1.86448 1.93209 1.29337 1.29606 1.21542 0.94541 1.30346 1.11584 0.92656 1.25612 0.95516 0.97018 0.97666 1.70011 1.01453 1.44110 1.41115 0.86440 0.77160 0.78871 0.83337 1.22158 1.22392 1.13852 1.22218 0.80654 0.98692 0.99305 1.20541 0.90286 0.99810 1.07753 0.89885 0.89953 0.90593 0.83574 0.84140 0.85967 0.92016 0.92035 0.85124 0.85189 0.86920 0.89224 0.90894 0.87472 0.76792 0.92326 0.94234 0.93111 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.05 -0.86 5.88 -19.88 -0.12 -0.97 16 3 C -0.16 -2.59 9.70 22.28 0.22 -2.38 16 4 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 5 C -0.23 -5.30 9.04 22.37 0.20 -5.10 16 6 C 0.11 2.66 6.69 22.51 0.15 2.81 16 7 O -0.32 -7.61 10.14 -92.41 -0.94 -8.54 16 8 C 0.08 1.98 4.03 71.98 0.29 2.28 16 9 C -0.12 -2.61 5.08 29.85 0.15 -2.46 16 10 C 0.52 17.56 7.85 87.66 0.69 18.25 16 11 O -0.60 -25.52 16.31 -3.03 -0.05 -25.57 16 12 N -0.61 -21.36 3.33 -811.78 -2.70 -24.06 16 13 C 0.10 2.55 6.68 86.86 0.58 3.13 16 14 C -0.14 -4.29 6.22 31.99 0.20 -4.09 16 15 C 0.21 8.91 0.68 -10.35 -0.01 8.91 16 16 O -0.58 -23.03 10.47 -148.98 -1.56 -24.59 16 17 C -0.54 -28.64 8.72 25.60 0.22 -28.41 16 18 H 0.06 3.16 8.03 -2.91 -0.02 3.13 16 19 C 0.04 2.45 5.47 84.66 0.46 2.91 16 20 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 21 Si 0.92 46.21 23.99 68.60 1.65 47.85 16 22 H -0.29 -15.45 7.11 99.48 0.71 -14.74 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.22 -10.39 5.40 99.48 0.54 -9.85 16 25 C 0.11 5.11 4.39 86.73 0.38 5.49 16 26 C -0.17 -3.21 9.64 22.37 0.22 -3.00 16 27 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 29 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.12 2.89 6.30 -2.91 -0.02 2.87 16 33 H 0.06 1.61 7.62 -2.39 -0.02 1.60 16 34 H 0.06 1.62 7.62 -2.39 -0.02 1.60 16 35 H 0.13 2.25 7.85 -2.39 -0.02 2.23 16 36 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.11 1.94 7.48 -2.39 -0.02 1.92 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 40 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 41 H 0.38 12.43 9.10 -74.06 -0.67 11.76 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.04 1.91 5.70 -2.39 -0.01 1.90 16 44 H 0.05 2.56 7.62 -2.39 -0.02 2.54 16 45 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.57 364.48 1.43 -73.14 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.15 Total: 22.18 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.57 Total: -4.30 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.40 Total: -80.17 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -2.55 Total: -58.70 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.65 Total: 47.85 kcal Total: -74.57 1.43 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.168 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds