Wall clock time and date at job start Tue Mar 31 2020 12:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99687 * 2 1 4 4 C 1.53002 * 109.46685 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47213 * 60.00067 * 3 2 1 6 6 O 1.21285 * 120.00182 * 218.42783 * 5 3 2 7 7 N 1.34777 * 120.00142 * 38.42270 * 5 3 2 8 8 C 1.47746 * 125.82154 * 359.91345 * 7 5 3 9 9 C 1.54910 * 104.84167 * 155.82554 * 8 7 5 10 10 C 1.55158 * 101.58463 * 37.09447 * 9 8 7 11 11 O 1.42900 * 110.71931 * 82.85667 * 10 9 8 12 12 C 1.50693 * 110.72502 * 206.13700 * 10 9 8 13 13 H 1.07998 * 120.00412 * 113.51608 * 12 10 9 14 14 C 1.37880 * 119.99446 * 293.52271 * 12 10 9 15 15 N 1.31516 * 120.00477 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99726 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47090 * 89.99623 * 16 14 12 18 18 H 1.48500 * 109.47067 * 209.99809 * 16 14 12 19 19 H 1.48498 * 109.47048 * 330.00041 * 16 14 12 20 20 C 1.47024 * 125.65143 * 179.97438 * 7 5 3 21 21 C 1.50699 * 109.47320 * 299.99901 * 3 2 1 22 22 C 1.38233 * 120.00036 * 77.07067 * 21 3 2 23 23 C 1.38230 * 119.99948 * 179.76662 * 22 21 3 24 24 C 1.38240 * 120.00109 * 0.48620 * 23 22 21 25 25 C 1.38228 * 119.99889 * 359.79426 * 24 23 22 26 26 C 1.38236 * 119.99940 * 257.35283 * 21 3 2 27 27 H 1.09004 * 109.46842 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47160 * 300.00138 * 1 2 3 29 29 H 1.09001 * 109.47150 * 60.00405 * 1 2 3 30 30 H 1.08995 * 109.47570 * 299.99809 * 4 3 2 31 31 H 1.08993 * 109.47123 * 60.00618 * 4 3 2 32 32 H 1.09006 * 109.46642 * 180.02562 * 4 3 2 33 33 H 1.08999 * 110.29109 * 37.02290 * 8 7 5 34 34 H 1.09000 * 110.52756 * 274.74796 * 8 7 5 35 35 H 1.08997 * 111.00668 * 279.01605 * 9 8 7 36 36 H 1.09008 * 111.00374 * 155.16844 * 9 8 7 37 37 H 0.96699 * 114.00062 * 66.48522 * 11 10 9 38 38 H 0.96992 * 120.00278 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.87516 * 61.61197 * 20 7 5 40 40 H 1.09000 * 109.88159 * 300.60424 * 20 7 5 41 41 H 1.08009 * 120.00047 * 0.02562 * 22 21 3 42 42 H 1.08003 * 120.00218 * 180.25785 * 23 22 21 43 43 H 1.08001 * 120.00098 * 179.76503 * 24 23 22 44 44 H 1.08002 * 120.00500 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.99985 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 1.5655 2.0533 1.2304 6 8 1.3109 3.2371 1.1617 7 7 1.4507 1.4067 2.4073 8 6 1.7246 -0.0270 2.6365 9 6 2.0563 -0.1312 4.1461 10 6 1.0725 0.9035 4.7535 11 8 -0.2214 0.3247 4.9350 12 6 1.6040 1.4440 6.0559 13 1 1.8913 2.4822 6.1326 14 6 1.7235 0.6130 7.1496 15 7 1.3732 -0.6513 7.0563 16 14 2.3830 1.2828 8.7639 17 1 1.2558 1.7920 9.5859 18 1 3.0828 0.1996 9.5002 19 1 3.3344 2.3892 8.4889 20 6 1.0299 2.0112 3.6798 21 6 1.5655 2.0534 -1.2304 22 6 0.2950 2.5948 -1.2887 23 6 -0.1112 3.2849 -2.4155 24 6 0.7497 3.4250 -3.4880 25 6 2.0182 2.8787 -3.4320 26 6 2.4262 2.1929 -2.3031 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8568 0.6440 0.8908 31 1 3.8574 0.6437 -0.8891 32 1 3.9788 2.1805 0.0011 33 1 2.5764 -0.3495 2.0378 34 1 0.8459 -0.6267 2.3990 35 1 3.0907 0.1530 4.3394 36 1 1.8513 -1.1333 4.5230 37 1 -0.2486 -0.3770 5.5997 38 1 1.4569 -1.2358 7.8258 39 1 0.0156 2.3995 3.5880 40 1 1.7121 2.8169 3.9509 41 1 -0.3789 2.4821 -0.4523 42 1 -1.1024 3.7115 -2.4594 43 1 0.4310 3.9610 -4.3698 44 1 2.6907 2.9877 -4.2700 45 1 3.4174 1.7664 -2.2592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:47 Heat of formation + Delta-G solvation = -105.670277 kcal Electronic energy + Delta-G solvation = -28428.730425 eV Core-core repulsion = 24604.083925 eV Total energy + Delta-G solvation = -3824.646500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16288 -40.18200 -38.90782 -38.38954 -36.10970 -34.16825 -34.05269 -31.93234 -31.59466 -30.53810 -29.99880 -27.47656 -27.25521 -25.74311 -23.96316 -23.36755 -22.37786 -21.39858 -20.42019 -19.24982 -18.76292 -18.19081 -17.19268 -16.99296 -16.93190 -16.73278 -16.36204 -16.03171 -15.56893 -15.37363 -15.25325 -14.82740 -14.72744 -14.39589 -13.96627 -13.83627 -13.75083 -13.59275 -13.40050 -13.25319 -13.16202 -13.11993 -12.81235 -12.78413 -12.64807 -12.38504 -12.27856 -12.10801 -12.00091 -11.88222 -11.35323 -11.29632 -10.68734 -10.42383 -10.15464 -9.81846 -9.78481 -9.67992 -8.27163 -6.41534 0.30908 0.47750 1.38777 1.40727 1.43768 1.52462 1.88875 2.38128 2.56171 2.92877 2.98030 3.29384 3.46111 3.82325 3.84455 3.99673 4.07953 4.13042 4.21472 4.24500 4.33026 4.34600 4.41974 4.52114 4.55174 4.57338 4.63912 4.68257 4.72378 4.77508 4.90111 4.99012 5.09240 5.11222 5.15870 5.18157 5.43205 5.48842 5.51217 5.57835 5.58540 5.74350 5.83200 6.03134 6.06486 6.49776 6.61886 6.98510 7.29293 7.42314 8.79344 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.003419 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.462139 B = 8186.999969 C = 8269.619660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.357 6.357 3 C 0.152 3.848 4 C -0.140 4.140 5 C 0.500 3.500 6 O -0.575 6.575 7 N -0.600 5.600 8 C 0.117 3.883 9 C -0.130 4.130 10 C 0.239 3.761 11 O -0.594 6.594 12 C -0.564 4.564 13 H 0.052 0.948 14 C 0.038 3.962 15 N -0.907 5.907 16 Si 0.961 3.039 17 H -0.278 1.278 18 H -0.275 1.275 19 H -0.274 1.274 20 C 0.127 3.873 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.104 4.104 27 H 0.114 0.886 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.273 0.727 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 -0.266 -19.412 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.276 6.276 3 C 0.110 3.890 4 C -0.196 4.196 5 C 0.288 3.712 6 O -0.456 6.456 7 N -0.332 5.332 8 C -0.004 4.004 9 C -0.169 4.169 10 C 0.199 3.801 11 O -0.405 6.405 12 C -0.602 4.602 13 H 0.070 0.930 14 C -0.164 4.164 15 N -0.546 5.546 16 Si 0.786 3.214 17 H -0.204 1.204 18 H -0.201 1.201 19 H -0.199 1.199 20 C 0.004 3.996 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.154 4.154 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.122 4.122 27 H 0.132 0.868 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.169 0.831 44 H 0.174 0.826 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.520 0.468 -19.867 20.032 hybrid contribution -0.252 0.275 2.084 2.117 sum 2.268 0.743 -17.783 17.943 Atomic orbital electron populations 1.23121 0.80521 1.04443 0.99930 1.88024 1.20609 1.24559 1.94386 1.20489 0.97358 0.82992 0.88200 1.21952 0.88079 1.04149 1.05467 1.21463 0.77611 0.87429 0.84694 1.90663 1.52110 1.17112 1.85686 1.48773 1.64664 1.11932 1.07798 1.22546 1.01260 0.79743 0.96879 1.23159 0.99719 1.01131 0.92851 1.19531 0.81035 0.88545 0.91002 1.86073 1.32737 1.57529 1.64131 1.21739 1.44679 0.96834 0.96969 0.92980 1.25595 0.94212 0.94943 1.01616 1.69623 1.47894 1.04914 1.32174 0.85519 0.78410 0.78202 0.79249 1.20390 1.20052 1.19889 1.21830 0.97943 0.96528 0.83253 1.19892 0.95561 1.00882 0.95653 1.21052 0.95852 0.97624 0.97897 1.21353 1.01159 0.99299 0.93612 1.21561 0.93946 0.98837 0.98687 1.21533 0.96831 0.97451 0.98425 1.21402 0.99997 0.98419 0.92373 0.86753 0.95849 0.92506 0.90868 0.87145 0.90029 0.88744 0.91448 0.92194 0.90521 0.76550 0.91689 0.94094 0.92285 0.88844 0.84781 0.83107 0.82593 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.48 113.37 0.96 1.39 16 2 O -0.36 -10.16 8.09 -148.98 -1.21 -11.36 16 3 C 0.15 4.50 0.65 -12.29 -0.01 4.49 16 4 C -0.14 -3.26 7.62 71.98 0.55 -2.71 16 5 C 0.50 19.21 4.88 87.66 0.43 19.63 16 6 O -0.58 -25.80 15.32 -3.04 -0.05 -25.85 16 7 N -0.60 -24.27 2.88 -810.96 -2.34 -26.60 16 8 C 0.12 4.31 5.09 86.79 0.44 4.75 16 9 C -0.13 -5.63 5.67 31.99 0.18 -5.45 16 10 C 0.24 11.78 0.86 -10.35 -0.01 11.77 16 11 O -0.59 -30.60 13.09 -148.98 -1.95 -32.55 16 12 C -0.56 -30.05 8.21 25.60 0.21 -29.84 16 13 H 0.05 2.82 7.53 -2.91 -0.02 2.80 16 14 C 0.04 1.93 5.28 84.66 0.45 2.38 16 15 N -0.91 -46.16 10.70 21.45 0.23 -45.93 16 16 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.13 6.00 6.21 86.73 0.54 6.54 16 21 C -0.12 -3.31 4.37 -19.87 -0.09 -3.40 16 22 C -0.11 -3.10 6.20 22.27 0.14 -2.96 16 23 C -0.14 -3.19 10.05 22.27 0.22 -2.97 16 24 C -0.11 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.10 -2.22 9.11 22.27 0.20 -2.02 16 27 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.02 0.76 6.36 -2.39 -0.02 0.74 16 29 H 0.06 1.47 5.49 -2.39 -0.01 1.45 16 30 H 0.07 1.75 6.69 -2.39 -0.02 1.73 16 31 H 0.11 1.87 6.77 -2.39 -0.02 1.85 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.09 2.99 5.72 -2.39 -0.01 2.97 16 34 H 0.07 2.45 6.99 -2.39 -0.02 2.44 16 35 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 36 H 0.08 3.44 7.78 -2.38 -0.02 3.42 16 37 H 0.38 19.84 6.98 -74.06 -0.52 19.32 16 38 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 39 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 40 H 0.06 2.88 7.63 -2.39 -0.02 2.86 16 41 H 0.09 3.13 6.31 -2.91 -0.02 3.11 16 42 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.15 2.40 5.96 -2.91 -0.02 2.38 16 Total: -1.00 -63.48 348.82 1.88 -61.59 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: 0.50 Total: 39.57 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 4.67 Total: -2.20 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -2.11 Total: -72.54 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -3.20 Total: -69.76 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -63.48 1.88 -61.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.078 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds